Prediction of protein-protein interaction sites using support vector machines

scientific article published on 20 January 2004

Prediction of protein-protein interaction sites using support vector machines is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/PROTEIN/GZH020
P698PubMed publication ID15047913
P5875ResearchGate publication ID8652783

P2093author name stringToshihisa Takagi
Asako Koike
P4510describes a project that usessupport vector machineQ282453
P433issue2
P921main subjectsupport vector machineQ282453
protein-protein interactionQ896177
P304page(s)165-173
P577publication date2004-01-20
P1433published inProtein Engineering Design and SelectionQ15762396
P1476titlePrediction of protein-protein interaction sites using support vector machines
P478volume17

Reverse relations

cites work (P2860)
Q50939444A hidden Markov model for predicting protein interfaces.
Q51009573A novel feature extraction scheme for prediction of protein-protein interaction sites.
Q30372092Algorithmic approaches to protein-protein interaction site prediction.
Q43486215An IR-Aided Machine Learning Framework for the BioCreative II.5 Challenge
Q31117651An integrated approach to the detection of colorectal cancer utilizing proteomics and bioinformatics
Q37141790Bridging protein local structures and protein functions
Q35225190CRF-based models of protein surfaces improve protein-protein interaction site predictions
Q41462734Combining features in a graphical model to predict protein binding sites
Q30373141Common physical basis of macromolecule-binding sites in proteins
Q33959989Comparative pathogenesis and systems biology for biodefense virus vaccine development
Q29029166Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
Q45943660Different protein-protein interface patterns predicted by different machine learning methods.
Q34724120Discovering amino acid patterns on binding sites in protein complexes
Q33247479Docking protein domains in contact space.
Q30410742Exploiting a reduced set of weighted average features to improve prediction of DNA-binding residues from 3D structures
Q33283745Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins
Q33289001High-throughput identification of interacting protein-protein binding sites
Q30359291ISIS: interaction sites identified from sequence.
Q37224685Identifying protein-protein interaction sites using covering algorithm
Q43881326Improved prediction of protein binding sites from sequences using genetic algorithm
Q48507116Improved prediction of protein-protein binding sites using a support vector machines approach
Q30398188Improved protein-protein interactions prediction via weighted sparse representation model combining continuous wavelet descriptor and PseAA composition
Q36643290InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
Q33263964IntNetDB v1.0: an integrated protein-protein interaction network database generated by a probabilistic model
Q45945287IntPred: a structure-based predictor of protein-protein interaction sites.
Q33827023Interaction site prediction by structural similarity to neighboring clusters in protein-protein interaction networks
Q36857223Interaction-site prediction for protein complexes: a critical assessment
Q33250256Optimised amino acid specific weighting factors for unbound protein docking
Q31043905Partner-aware prediction of interacting residues in protein-protein complexes from sequence data
Q37465361Predicting Protein-Protein Interaction Sites Using Sequence Descriptors and Site Propensity of Neighboring Amino Acids
Q51957448Predicting protein interaction sites from residue spatial sequence profile and evolution rate.
Q38386937Predicting protein interface residues using easily accessible on-line resources.
Q30381038Predicting protein-protein binding sites in membrane proteins.
Q34655310Prediction of DNA-binding residues from sequence
Q42648656Prediction of Protein-Protein Interaction Sites Based on Naive Bayes Classifier
Q92661289Prediction of Protein-Protein Interaction Sites Using Convolutional Neural Network and Improved Data Sets
Q52607638Prediction of Protein-Protein Interactions from Amino Acid Sequences Based on Continuous and Discrete Wavelet Transform Features.
Q30899207Prediction of protein binding sites in protein structures using hidden Markov support vector machine
Q33395077Prediction of protein-protein binding site by using core interface residue and support vector machine
Q37091467Prediction of protein-protein interaction sites by means of ensemble learning and weighted feature descriptor
Q28482815Prediction of protein-protein interaction sites by random forest algorithm with mRMR and IFS
Q45953710Prediction of protein-protein interaction sites from weakly homologous template structures using meta-threading and machine learning.
Q28474551Prediction of protein-protein interaction sites in sequences and 3D structures by random forests
Q33518924Prediction of protein-protein interaction sites using an ensemble method
Q33403407Prediction of protein-protein interaction types using association rule based classification
Q51508103PresCont: predicting protein-protein interfaces utilizing four residue properties.
Q28602320Progress and challenges in predicting protein interfaces
Q51585994Protein binding site prediction by combining hidden Markov support vector machine and profile-based propensities.
Q28469249Protein-protein interaction hotspots carved into sequences
Q51925019Protein-protein interaction site prediction based on conditional random fields.
Q47912020Protein-protein interaction site prediction in Homo sapiens and E. coli using an interaction-affinity based membership function in fuzzy SVM.
Q34305178Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces
Q30370687Ranking the quality of protein structure models using sidechain based network properties
Q33974356Rigorous assessment and integration of the sequence and structure based features to predict hot spots
Q33268113SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions.
Q41870225SVM based model generation for binding site prediction on helix turn helix motif type of transcription factors in eukaryotes
Q35786195Sequence and structural features of binding site residues in protein-protein complexes: comparison with protein-nucleic acid complexes
Q30858730Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data.
Q37067345Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces
Q30363264Structural bioinformatics of the interactome.
Q59068246The Prediction of Protein-Protein Interaction Sites Based on RBF Classifier Improved by SMOTE
Q22241275The interactome: Predicting the protein-protein interactions in cells
Q30479591Using structural motif descriptors for sequence-based binding site prediction
Q47173634Using support vector machine combined with post-processing procedure to improve prediction of interface residues in transient complexes

Search more.