From genomics to metabolomics, moving toward an integrated strategy for the discovery of fungal secondary metabolites.

scientific article published on 31 January 2018

From genomics to metabolomics, moving toward an integrated strategy for the discovery of fungal secondary metabolites. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1039/C7NP00032D
P698PubMed publication ID29384544

P50authorOlivier PuelQ50210583
P2093author name stringI P Oswald
L Debrauwer
E L Jamin
T Hautbergue
P2860cites workIn silico fragmentation for computer assisted identification of metabolite mass spectraQ21284354
Genome sequencing and analysis of Aspergillus oryzaeQ22122467
RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and databaseQ27807496
MassBank: a public repository for sharing mass spectral data for life sciencesQ27809667
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular NetworkingQ27818844
Fragmentation trees reloadedQ27902332
Integration of Microfractionation, qNMR and zebrafish screening for the in vivo bioassay-guided isolation and quantitative bioactivity analysis of natural productsQ28488352
Identifying the Unknowns by Aligning Fragmentation TreesQ28530233
Current approaches and challenges for the metabolite profiling of complex natural extractsQ28975879
Dereplication of peptidic natural products through database search of mass spectraQ33614929
Computational mass spectrometry for metabolomics: identification of metabolites and small moleculesQ33714757
Computing fragmentation trees from tandem mass spectrometry dataQ33779369
NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide DiscoveryQ34083429
Three new compounds from Aspergillus terreus PT06-2 grown in a high salt mediumQ35188268
Purpurogemutantin and purpurogemutantidin, new drimenyl cyclohexenone derivatives produced by a mutant obtained by diethyl sulfate mutagenesis of a marine-derived Penicillium purpurogenum G59Q36096686
Searching molecular structure databases with tandem mass spectra using CSI:FingerID.Q36179301
MZmine 2 Data-Preprocessing To Enhance Molecular Networking Reliability.Q36413304
Development of Genetic Dereplication Strains in Aspergillus nidulans Results in the Discovery of Aspercryptin.Q36494186
Metabolite induction via microorganism co-culture: a potential way to enhance chemical diversity for drug discoveryQ38197830
Dereplication: racing to speed up the natural products discovery process.Q38409890
Three new and eleven known unusual C25 steroids: activated production of silent metabolites in a marine-derived fungus by chemical mutagenesis strategy using diethyl sulphateQ38535538
Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networksQ38615264
Rare Chromones from a Fungal Mutant of the Marine-Derived Penicillium purpurogenum G59.Q38842039
Activation of dormant secondary metabolite production by introducing neomycin resistance into the deep-sea fungus, Aspergillus versicolor ZBY-3.Q38970268
A practical strategy to discover new antitumor compounds by activating silent metabolite production in fungi by diethyl sulphate mutagenesis.Q39010289
Investigation of a 6-MSA Synthase Gene Cluster in Aspergillus aculeatus Reveals 6-MSA-derived Aculinic Acid, Aculins A-B and Epi-Aculin A.Q40535633
Benesudon, a new antibiotic fungal metabolite from cultures of Mollisia benesuada (Tul.) PhillQ41140587
CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectraQ41861014
De novo production of metabolites by fungal co-culture of Trichophyton rubrum and Bionectria ochroleucaQ45832937
A novel fungal metabolite with beneficial properties for agricultural applications.Q46868730
Automatic chemical structure annotation of an LC-MS(n) based metabolic profile from green tea.Q48039445
Detection of metabolite induction in fungal co-cultures on solid media by high-throughput differential ultra-high pressure liquid chromatography-time-of-flight mass spectrometry fingerprinting.Q50492012
Competitive fragmentation modeling of ESI-MS/MS spectra for putative metabolite identificationQ57014238
Differential Analysis of Mycoalexins in Confrontation Zones of Grapevine Fungal Pathogens by Ultrahigh Pressure Liquid Chromatography/Time-of-Flight Mass Spectrometry and Capillary Nuclear Magnetic ResonanceQ58856054
Identification of Natural Products Using HPLC-SPE Combined with CapNMRQ58856064
Bacterium Induces Cryptic Meroterpenoid Pathway in the Pathogenic FungusAspergillus fumigatusQ61774164
P433issue2
P921main subjectmetabolomicsQ12149006
genomicsQ222046
secondary metaboliteQ522244
P304page(s)147-173
P577publication date2018-02-01
P1433published inNatural Product ReportsQ2376904
P1476titleFrom genomics to metabolomics, moving toward an integrated strategy for the discovery of fungal secondary metabolites
P478volume35

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cites work (P2860)
Q57072796A Class 1 Histone Deacetylase as Major Regulator of Secondary Metabolite Production in
Q114866356A community resource for paired genomic and metabolomic data mining
Q64262119Antarctic Streptomyces fildesensis So13.3 strain as a promising source for antimicrobials discovery
Q92458760Collaborative Biosynthesis of a Class of Bioactive Azaphilones by Two Separate Gene Clusters Containing Four PKS/NRPSs with Transcriptional Crosstalk in Fungi
Q92569316Dalestones A and B, two anti-inflammatory cyclopentenones from Daldinia eschscholzii with an edited strong promoter for the global regulator LaeA-like gene
Q89477777Date Palm Trees Root-Derived Endophytes as Fungal Cell Factories for Diverse Bioactive Metabolites
Q111589059Genome sequencing and annotation and phylogenomic analysis of the medicinal mushroom Amauroderma rugosum , a traditional medicinal species in the family Ganodermataceae
Q92960172Insights into the Diversity of Secondary Metabolites of Planktothrix Using a Biphasic Approach Combining Global Genomics and Metabolomics
Q64228438Mapping the Fungal Battlefield: Using Chemistry and Deletion Mutants to Monitor Interspecific Chemical Interactions Between Fungi
Q114871768Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices
Q90177021Metabolome Analysis Identified Okaramines in the Soybean Rhizosphere as a Legacy of Hairy Vetch
Q89885529Metabolomic applications for understanding complex tripartite plant-microbes interactions: Strategies and perspectives
Q114866593Searching for original natural products by molecular networking: detection, isolation and total synthesis of chloroaustralasines
Q90645620Secondary metabolites from hypocrealean entomopathogenic fungi: genomics as a tool to elucidate the encoded parvome

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