Structural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement.

scientific article published in December 2002

Structural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1105/TPC.006338
P932PMC publication ID151213
P698PubMed publication ID12468738

P50authorWusirika RamakrishnaQ57006737
Phillip J SanMiguelQ89269883
Jeffrey L. BennetzenQ89722668
P2093author name stringMatthew Ogden
John Emberton
P2860cites workThe CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
A structural basis of the interactions between leucine-rich repeats and protein ligandsQ27730391
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutionsQ27860462
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequencesQ27860580
MEGA2: molecular evolutionary genetics analysis softwareQ27860788
Plant pathogens and integrated defence responses to infectionQ28207107
Signaling in plant-microbe interactionsQ28235774
Abundance, distribution, and transcriptional activity of repetitive elements in the maize genomeQ30731528
Molecular characterization of the maize Rp1-D rust resistance haplotype and its mutantsQ30732067
Capture of genomic and T-DNA sequences during double-strand break repair in somatic plant cellsQ33368852
The evolution of disease resistance genesQ33845505
Filler DNA is associated with spontaneous deletions in maizeQ33888422
Structure, function and evolution of plant disease resistance genesQ33954603
Unequal exchange and meiotic instability of disease-resistance genes in the Rp1 region of maize.Q33960331
Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat.Q33969175
Comparative sequence analysis of plant nuclear genomes:m microcolinearity and its many exceptionsQ33971721
The generation of plant disease resistance gene specificities.Q34023359
Genetics of plant-pathogen interactions specifying plant disease resistanceQ34128876
Common and contrasting themes of plant and animal diseasesQ34292177
The arms race is ancient history in Arabidopsis, the wildflowerQ34297072
Segmental duplications: an 'expanding' role in genomic instability and diseaseQ34389505
Nested retrotransposons in the intergenic regions of the maize genomeQ34402279
Origination of Ds elements from Ac elements in maize: evidence for rare repair synthesis at the site of Ac excision.Q34607467
Recombination and spontaneous mutation at the major cluster of resistance genes in lettuce (Lactuca sativa).Q34611914
Recombination between paralogues at the Rp1 rust resistance locus in maizeQ34612435
Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grassesQ35048108
Plant-pathogen microevolution: molecular basis for the origin of a fungal disease in maizeQ35882304
Recombination between diverged clusters of the tomato Cf-9 plant disease resistance gene familyQ36373239
Colinearity and its exceptions in orthologous adh regions of maize and sorghumQ36396170
On the structure of a gene for disease resistance in maizeQ36476105
The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genomeQ37121087
Receptor-like genes in the major resistance locus of lettuce are subject to divergent selectionQ38331444
The major resistance gene cluster in lettuce is highly duplicated and spans several megabasesQ38331448
Dissection of the fusarium I2 gene cluster in tomato reveals six homologs and one active gene copyQ38336339
Species-specific double-strand break repair and genome evolution in plantsQ40430402
Transposon-mediated chromosomal rearrangements and gene duplications in the formation of the maize R-r complexQ40806804
LTR-retrotransposons and MITEs: important players in the evolution of plant genomesQ41068242
New rust resistance specificities associated with recombination in the Rp1 complex in maize.Q42167435
Saturation mapping of a gene-rich recombination hot spot region in wheat.Q42229693
Sequence of three bronze alleles of maize and correlation with the genetic fine structureQ42287071
Contrasting modes of evolution acting on the complex N locus for rust resistance in flax.Q42660494
Evolution of the rice Xa21 disease resistance gene familyQ42663189
Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death processQ43890109
Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.Q44239892
Organization, instability and evolution of plant disease resistance genesQ44519942
The paleontology of intergene retrotransposons of maizeQ47750190
Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of ArabidopsisQ47911594
Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato.Q48041422
Inactivation of the flax rust resistance gene M associated with loss of a repeated unit within the leucine-rich repeat coding regionQ48051598
Retrotransposon reverse-transcriptase-mediated repair of chromosomal breaksQ48058936
Advances in the molecular genetic analysis of the flax-flax rust interaction.Q50993179
SWAN: sliding window analysis of nucleotide sequence variability.Q52239046
A member of the tomato Pto gene family confers sensitivity to fenthion resulting in rapid cell death.Q52540067
Capture of retrotransposon DNA at the sites of chromosomal double-strand breaksQ58323760
Recombination at the Rp1 locus of maizeQ68301056
Interphase fluorescence in situ hybridization mapping: a physical mapping strategy for plant species with large complex genomesQ71770885
Complex duplications in maize linesQ72221898
Small-sample tests of episodic adaptive evolution: a case study of primate lysozymesQ73949530
Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elementsQ77149272
P433issue12
P304page(s)3213-3223
P577publication date2002-12-01
P1433published inThe Plant CellQ3988745
P1476titleStructural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement
P478volume14

Reverse relations

cites work (P2860)
Q35880341A GeneTrek analysis of the maize genome
Q31158865A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes
Q34645891Allelic and haplotypic diversity at the rp1 rust resistance locus of maize
Q50233682Analysis of Extreme Phenotype Bulk Copy Number Variation (XP-CNV) Identified the Association of rp1 with Resistance to Goss's Wilt of Maize
Q37619449Centromere-encoded RNAs are integral components of the maize kinetochore.
Q81449776Characterization and fine mapping of RppQ, a resistance gene to southern corn rust in maize
Q83164952Characterization and fine-mapping of a resistance locus for northern leaf blight in maize bin 8.06
Q34569992Characterization of AFLP sequences from regions of maize B chromosome defined by 12 B-10L translocations
Q34868749Characterization of temperature and light effects on the defense response phenotypes associated with the maize Rp1-D21 autoactive resistance gene
Q57168731Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars
Q48269704Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex
Q53393517Development of IRAP- and REMAP-derived SCAR markers for marker-assisted selection of the stripe rust resistance gene Yr15 derived from wild emmer wheat.
Q33951998Differential gene expression and epiregulation of alpha zein gene copies in maize haplotypes
Q86985981Diversity and evolution of Rp1 rust resistance genes in four maize lines
Q33394747Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.
Q42645536Evolution of DNA sequence nonhomologies among maize inbreds
Q34385323Evolution of the Rdr1 TNL-cluster in roses and other Rosaceous species
Q37454662Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10.
Q29300755Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
Q37454543Gene duplication and hypermutation of the pathogen Resistance gene SNC1 in the Arabidopsis bal variant
Q40254192Gene loss and movement in the maize genome
Q33863231Gene movement by Helitron transposons contributes to the haplotype variability of maize
Q28660825Growth promotion-related miRNAs in Oncidium orchid roots colonized by the endophytic fungus Piriformospora indica
Q34591152Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice
Q35794389High genetic abundance of Rpi-blb2/Mi-1.2/Cami gene family in Solanaceae
Q28190960High‐Cot sequence analysis of the maize genome
Q37389086Incongruent patterns of local and global genome size evolution in cotton
Q36731885Meiosis-driven genome variation in plants.
Q48148034Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops).
Q31121942Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce
Q35553701Pattern of diversity in the genomic region near the maize domestication gene tb1.
Q47313669Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat
Q38347232Relationships between rust resistance genes at the M locus in flax.
Q33254232Retrotranspositions in orthologous regions of closely related grass species
Q48070064Tandem organization of StarkB element (22.8 kb) in the maize B chromosome
Q50602680The frequent transcriptional readthrough of the tobacco Tnt1 retrotransposon and its possible implications for the control of resistance genes.
Q35038437Unequal sister chromatid and homolog recombination at a tandem duplication of the A1 locus in maize.