Umbrella integration with higher-order correction terms.

scientific article published in June 2012

Umbrella integration with higher-order correction terms. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1063/1.4729373
P698PubMed publication ID22779576
P5875ResearchGate publication ID229063019

P50authorJohannes KästnerQ57004811
P2860cites workCanonical dynamics: Equilibrium phase-space distributionsQ21709091
λ-Dynamics free energy simulation methodsQ27489387
All-atom empirical potential for molecular modeling and dynamics studies of proteinsQ27860468
Some applications of the transition state method to the calculation of reaction velocities, especially in solutionQ29013030
QM/MM Free-Energy Perturbation Compared to Thermodynamic Integration and Umbrella Sampling:  Application to an Enzymatic ReactionQ29396026
Statistically optimal analysis of samples from multiple equilibrium statesQ30438437
Reconstructing potential energy functions from simulated force-induced unbinding processesQ33907359
Dynamic strength of molecular adhesion bondsQ33915225
Molecular dynamics study of unbinding of the avidin-biotin complexQ33915230
Escaping free-energy minimaQ34151010
Artificial reaction coordinate "tunneling" in free-energy calculations: the catalytic reaction of RNase H.Q34994275
Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture forceQ36793608
Basic ingredients of free energy calculations: a reviewQ37662435
Free energy via molecular simulation: applications to chemical and biomolecular systemsQ38648060
Bimolecular reaction rates from ring polymer molecular dynamicsQ39981374
Implementation of umbrella integration within the framework of the empirical valence bond approachQ43157992
Umbrella integration in two or more reaction coordinatesQ45255142
Calculation of conformation-dependent biomolecular forces.Q50867834
Theory of a systematic computational error in free energy differences.Q52029803
Bridging the gap between thermodynamic integration and umbrella sampling provides a novel analysis method: "Umbrella integration".Q52994015
Comparing measures of sample skewness and kurtosisQ55878625
The Activated Complex in Chemical ReactionsQ56672415
QUASI: A general purpose implementation of the QM/MM approach and its application to problems in catalysisQ56991637
Umbrella samplingQ57229941
Analysis of the statistical error in umbrella sampling simulations by umbrella integrationQ57397930
Fast-growth thermodynamic integration: Error and efficiency analysisQ57875225
P433issue23
P407language of work or nameEnglishQ1860
P304page(s)234102
P577publication date2012-06-01
P1433published inJournal of Chemical PhysicsQ900472
P1476titleUmbrella integration with higher-order correction terms.
P478volume136

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cites work (P2860)
Q36634357A New Maximum Likelihood Approach for Free Energy Profile Construction from Molecular Simulations
Q51340438An algorithm to find minimum free-energy paths using umbrella integration.
Q38986183Enhancement of canonical sampling by virtual-state transitions.
Q47658579Multi-dimensional virtual system introduced to enhance canonical sampling
Q51109755Nudged-elastic band used to find reaction coordinates based on the free energy.
Q37549538Roadmaps through free energy landscapes calculated using the multi-dimensional vFEP approach

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