Similarities between initiation of V(D)J recombination and retroviral integration

scientific article

Similarities between initiation of V(D)J recombination and retroviral integration is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode1996Sci...271.1592V
P356DOI10.1126/SCIENCE.271.5255.1592
P698PubMed publication ID8599117
P5875ResearchGate publication ID14601668

P2093author name stringMizuuchi K
Gellert M
van Gent DC
P433issue5255
P407language of work or nameEnglishQ1860
P304page(s)1592-1594
P577publication date1996-03-01
P1433published inScienceQ192864
P1476titleSimilarities between initiation of V(D)J recombination and retroviral integration
P478volume271

Reverse relations

cites work (P2860)
Q34303871A RAG-1/RAG-2 tetramer supports 12/23-regulated synapsis, cleavage, and transposition of V(D)J recombination signals
Q33958478A RAG1 and RAG2 tetramer complex is active in cleavage in V(D)J recombination
Q39719591A complex of RAG-1 and RAG-2 proteins persists on DNA after single-strand cleavage at V(D)J recombination signal sequences
Q77195640A preferred target DNA structure for retroviral integrase in vitro
Q34547234A recombinase diversified: new functions of the RAG proteins
Q34295816A role for secondary V(D)J recombination in oncogenic chromosomal translocations?
Q38349361A stable RAG1-RAG2-DNA complex that is active in V(D)J cleavage
Q38329553Accessibility of nucleosomal DNA to V(D)J cleavage is modulated by RSS positioning and HMG1.
Q51803328Amino acid residues in Rag1 crucial for DNA hairpin formation.
Q33889534An ATP-ADP switch in MuB controls progression of the Mu transposition pathway
Q27648444An Interlocked Dimer of the Protelomerase TelK Distorts DNA Structure for the Formation of Hairpin Telomeres
Q46107069Antigen receptor gene rearrangement
Q28275539Assembly of a 12/23 paired signal complex: a critical control point in V(D)J recombination
Q34290414Assembly of the RAG1/RAG2 synaptic complex
Q96607405Biochemical activity of RAGs is impeded by Dolutegravir, an HIV integrase inhibitor
Q40402552Both high mobility group (HMG)-boxes and the acidic tail of HMGB1 regulate recombination-activating gene (RAG)-mediated recombination signal synapsis and cleavage in vitro
Q28081315Coevolution of MHC genes (LMP/TAP/class Ia, NKT-class Ib, NKp30-B7H6): lessons from cold-blooded vertebrates
Q41101441Complementation of V(D)J recombination deficiency in RAG-1(-/-) B cells reveals a requirement for novel elements in the N-terminus of RAG-1.
Q33966887Conditional RAG-1 mutants block the hairpin formation step of V(D)J recombination
Q77734518Contributions of CD4+, CD8+, and CD4+CD8+ T cells to skewing within the peripheral T cell receptor beta chain repertoire of healthy macaques
Q41429654Control of immunoglobulin gene rearrangements in developing B cells
Q35970972Control of transposase activity within a transpososome by the configuration of the flanking DNA segment of the transposon
Q36684764Cooperative recruitment of HMGB1 during V(D)J recombination through interactions with RAG1 and DNA.
Q41044013Cutting apart V(D)J recombination
Q24791637Cyclic changes in the affinity of protein-DNA interactions drive the progression and regulate the outcome of the Tn10 transposition reaction
Q40907770Cyclin A/CDK2 regulates V(D)J recombination by coordinating RAG-2 accumulation and DNA repair
Q33652023DNA hairpin opening mediated by the RAG1 and RAG2 proteins
Q36562940DNA sequence and structure requirements for cleavage of V(D)J recombination signal sequences
Q47750695DNA transposition by the RAG1 and RAG2 proteins: a possible source of oncogenic translocations
Q30479923DNA transposition target immunity and the determinants of the MuB distribution patterns on DNA
Q28751993DNA transposons: nature and applications in genomics
Q28140723Degradation of HIV-1 integrase by the N-end rule pathway
Q33958242Detection of RAG protein-V(D)J recombination signal interactions near the site of DNA cleavage by UV cross-linking
Q28366147Determinants for hairpin formation in Tn10 transposition
Q34552628Developmentally programmed excision of internal DNA sequences in Paramecium aurelia
Q44017740Direct observation of single MuB polymers: evidence for a DNA-dependent conformational change for generating an active target complex
Q39728013Directional binding of HMG-I(Y) on four-way junction DNA and the molecular basis for competitive binding with HMG-1 and histone H1.
Q35852678Distinct DNA sequence and structure requirements for the two steps of V(D)J recombination signal cleavage
Q33775546Distinct roles of RAG1 and RAG2 in binding the V(D)J recombination signal sequences
Q40668121Do retroviruses preferentially integrate within highly plastic regions of the human genome?
Q35188701Drosophila P-element transposase is a novel site-specific endonuclease
Q64286620Early life exposures, neurodevelopmental disorders, and transposable elements
Q33896796Effect of HIV integrase inhibitors on the RAG1/2 recombinase
Q77990761Epigenetic interactions among three dTph1 transposons in two homologous chromosomes activate a new excision-repair mechanism in petunia
Q33775068Extensive, nonrandom diversity of excision footprints generated by Ds-like transposon Ascot-1 suggests new parallels with V(D)J recombination
Q34296487Factors and forces controlling V(D)J recombination
Q39677703Fine structure and activity of discrete RAG-HMG complexes on V(D)J recombination signals
Q48717960Focal contributions to molecular biophysics and structural biology: a personal view. Part III.
Q38348176Full-length RAG-2, and Not Full-length RAG-1, Specifically Suppresses RAG-mediated Transposition but Not Hybrid Joint Formation or Disintegration
Q33775583Functional analysis of coordinated cleavage in V(D)J recombination
Q74473323Functional characterization of the Tn5 transposase by limited proteolysis
Q37783743Genome duplication and T cell immunity
Q34693905Genomic instability due to V(D)J recombination-associated transposition.
Q34050694HIV-1 integrase inhibitors: past, present, and future
Q33644040HMG protein family members stimulate human immunodeficiency virus type 1 and avian sarcoma virus concerted DNA integration in vitro
Q38329558Hairpin coding end opening is mediated by RAG1 and RAG2 proteins
Q24294409Hairpin opening and overhang processing by an Artemis/DNA-dependent protein kinase complex in nonhomologous end joining and V(D)J recombination
Q33205906Histone H2AX is phosphorylated at sites of retroviral DNA integration but is dispensable for postintegration repair.
Q32067274How to make ends meet in V(D)J recombination
Q33995584Human LINE-1 retrotransposon induces DNA damage and apoptosis in cancer cells
Q34718124Identification and characterization of a gain-of-function RAG-1 mutant
Q52081212Identification of two catalytic residues in RAG1 that define a single active site within the RAG1/RAG2 protein complex.
Q74293115Identification of two topologically independent domains in RAG1 and their role in macromolecular interactions relevant to V(D)J recombination
Q24798897Identifying related L1 retrotransposons by analyzing 3' transduced sequences
Q33821742Illegitimate V(D)J recombination-mediated deletions in Notch1 and Bcl11b are not sufficient for extensive clonal expansion and show minimal age or sex bias in frequency or junctional processing
Q28235295Immunology in the spotlight at the Dover 'Intelligent Design' trial
Q40567174In vitro processing of the 3'-overhanging DNA in the postcleavage complex involved in V(D)J joining
Q34794778In vivo transposition mediated by V(D)J recombinase in human T lymphocytes
Q29617579Insertion sequences
Q35023166Integrating prokaryotes and eukaryotes: DNA transposases in light of structure.
Q37884414Interactions of host proteins with the murine leukemia virus integrase
Q33948953Intermediates in V(D)J recombination: a stable RAG1/2 complex sequesters cleaved RSS ends.
Q38321453Involvement of DNA end-binding protein Ku in Ty element retrotransposition
Q41821763Ku80 is required for immunoglobulin isotype switching
Q36567784Ku86 is not required for protection of signal ends or for formation of nonstandard V(D)J recombination products
Q38354165Ku86-deficient mice exhibit severe combined immunodeficiency and defective processing of V(D)J recombination intermediates
Q36037736Mechanism and control of V(D)J recombination versus class switch recombination: similarities and differences
Q33960582Mechanistic basis for coding end sequence effects in the initiation of V(D)J recombination
Q33938490Mobile elements and the human genome
Q52565366Molecular architecture of a eukaryotic DNA transposase.
Q35210006Mutational analysis of RAG1 and RAG2 identifies three catalytic amino acids in RAG1 critical for both cleavage steps of V(D)J recombination
Q33964869Mutations in conserved regions of the predicted RAG2 kelch repeats block initiation of V(D)J recombination and result in primary immunodeficiencies
Q28510756Mutations of acidic residues in RAG1 define the active site of the V(D)J recombinase
Q39038472New insights into the evolutionary origins of the recombination-activating gene proteins and V(D)J recombination
Q34641788Nicking is asynchronous and stimulated by synapsis in 12/23 rule-regulated V(D)J cleavage
Q37790458Nucleases: diversity of structure, function and mechanism.
Q34090070Ordered assembly of the V(D)J synaptic complex ensures accurate recombination
Q33459180Paleo-immunology: evidence consistent with insertion of a primordial herpes virus-like element in the origins of acquired immunity
Q77355835Phylogenetic emergence and molecular evolution of the immunoglobulin family
Q47108181Physiological Roles of DNA Double-Strand Breaks
Q33934189Playing second fiddle: second-strand processing and liberation of transposable elements from donor DNA.
Q37352542Primordial emergence of the recombination activating gene 1 (RAG1): sequence of the complete shark gene indicates homology to microbial integrases
Q40976980Quality control in Mu DNA transposition
Q53616216RAG and HMGB1 proteins: purification and biochemical analysis of recombination signal complexes.
Q36573841RAG-1 and RAG-2-dependent assembly of functional complexes with V(D)J recombination substrates in solution
Q33958065RAG-2 promotes heptamer occupancy by RAG-1 in the assembly of a V(D)J initiation complex
Q40033943RAG-heptamer interaction in the synaptic complex is a crucial biochemical checkpoint for the 12/23 recombination rule
Q28307236RAG1 and RAG2 form a stable postcleavage synaptic complex with DNA containing signal ends in V(D)J recombination
Q34288648RAG1 and RAG2 in V(D)J recombination and transposition
Q21092810RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons
Q41157754RAG1 mediates signal sequence recognition and recruitment of RAG2 in V(D)J recombination
Q73989887RAG1/2-mediated resolution of transposition intermediates: two pathways and possible consequences
Q33968434Rag-1 mutations associated with B-cell-negative scid dissociate the nicking and transesterification steps of V(D)J recombination
Q41430421Recent advances in understanding V(D)J recombination.
Q34985886Regulation of RAG1/RAG2-mediated transposition by GTP and the C-terminal region of RAG2
Q42111003Regulation of activator/dissociation transposition by replication and DNA methylation
Q33702230Resident aliens: the Tc1/mariner superfamily of transposable elements
Q36949688Resistance mutations in human immunodeficiency virus type 1 integrase selected with elvitegravir confer reduced susceptibility to a wide range of integrase inhibitors
Q35219034Restraining the V(D)J recombinase
Q34668065Retroviral Integrase Structure and DNA Recombination Mechanism
Q41029973Retroviral integrase, putting the pieces together
Q42642005Separation-of-function mutants reveal critical roles for RAG2 in both the cleavage and joining steps of V(D)J recombination
Q64388530Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: insights from phosphorothioate stereoselectivity
Q35616738Site-specific DNA transesterification catalyzed by a restriction enzyme
Q34389437Site-specific recombination by the DDE family member mobile element IS30 transposase
Q41353188Specificity in V(D)J recombination: new lessons from biochemistry and genetics
Q41701981Stereospecificity of reactions catalyzed by HIV-1 integrase
Q33886633Stimulation of V(D)J cleavage by high mobility group proteins
Q39631050Structure of nonhairpin coding-end DNA breaks in cells undergoing V(D)J recombination
Q27655283Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis
Q33263575Target DNA structure plays a critical role in RAG transposition
Q31164008Targeting Tn5 transposase identifies human immunodeficiency virus type 1 inhibitors
Q33966875The DDE motif in RAG-1 is contributed in trans to a single active site that catalyzes the nicking and transesterification steps of V(D)J recombination
Q54676348The MRE11-RAD50-XRS2 complex, in addition to other non-homologous end-joining factors, is required for V(D)J joining in yeast.
Q38332454The RAG-HMG1 complex enforces the 12/23 rule of V(D)J recombination specifically at the double-hairpin formation step
Q28277487The RAG1 and RAG2 proteins establish the 12/23 rule in V(D)J recombination
Q73353796The RAG1/RAG2 complex constitutes a 3' flap endonuclease: implications for junctional diversity in V(D)J and transpositional recombination
Q41078625The Tn7 transposase is a heteromeric complex in which DNA breakage and joining activities are distributed between different gene products.
Q38924256The application of fluorescence-conjugated pyrrole/imidazole polyamides in the characterization of protein-DNA complex formation
Q36177454The beyond 12/23 restriction is imposed at the nicking and pairing steps of DNA cleavage during V(D)J recombination
Q41032621The effect of Me2+ cofactors at the initial stages of V(D)J recombination
Q56903271The homeodomain region of Rag-1 reveals the parallel mechanisms of bacterial and V(D)J recombination
Q39016663The impact of transposable elements on mammalian development
Q34619795The mechanism and regulation of chromosomal V(D)J recombination
Q33919197The old and the restless
Q41329165The origins of V(D)J recombination
Q36369521The role of recombination activating gene (RAG) reinduction in thymocyte development in vivo
Q22122375The role of selfish genetic elements in eukaryotic evolution
Q27617962The three-dimensional structure of a Tn5 transposase-related protein determined to 2.9-A resolution
Q28756514Transposable elements and the dynamic somatic genome
Q41011364Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system
Q33736014Transposition mediated by RAG1 and RAG2 and the evolution of the adaptive immune system
Q52654190Transposition of hAT elements links transposable elements and V(D)J recombination.
Q48664281Uncovering the V(D)J recombinase
Q34292616Unraveling V(D)J recombination; insights into gene regulation
Q38535955V(D)J Recombination: Mechanism, Errors, and Fidelity
Q54749851V(D)J recombination and RAG-mediated transposition in yeast.
Q34630089V(D)J recombination frequency is affected by the sequence interposed between a pair of recombination signals: sequence comparison reveals a putative recombinational enhancer element
Q73574910V(D)J recombination in Ku86-deficient mice: distinct effects on coding, signal, and hybrid joint formation
Q38334568V(D)J recombination signal recognition: distinct, overlapping DNA-protein contacts in complexes containing RAG1 with and without RAG2.
Q37769914V(D)J recombination: Born to be wild
Q36573432V(D)J recombination: in vitro coding joint formation
Q24324082V(D)J recombination: modulation of RAG1 and RAG2 cleavage activity on 12/23 substrates by whole cell extract and DNA-bending proteins
Q77198189VDJ recombination: a transposase goes to work
Q42850240Warner-Lambert/Parke-Davis Award Lecture. Pathological and physiological double-strand breaks: roles in cancer, aging, and the immune system
Q36570713piggyBac can bypass DNA synthesis during cut and paste transposition

Search more.