Complete genome sequence of Pseudomonas alcaliphila JAB1 (=DSM 26533), a versatile degrader of organic pollutants

scientific article published in February 2018

Complete genome sequence of Pseudomonas alcaliphila JAB1 (=DSM 26533), a versatile degrader of organic pollutants is …
instance of (P31):
case reportQ2782326
scholarly articleQ13442814

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P6179Dimensions Publication ID1100748513
P356DOI10.1186/S40793-017-0306-7
P932PMC publication ID5796565
P698PubMed publication ID29435100

P50authorTomas CajthamlQ51504012
Tomas MacekQ54852007
Ondrej UhlikQ56635677
Michal StrejčekQ115247738
Jáchym ŠumanQ119521768
P2093author name stringSerena Fraraccio
Hynek Strnad
Miluse Hradilova
Jakub Ridl
Andrea Zubrova
P2860cites workThe COG database: an updated version includes eukaryotesQ21284294
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and EucaryaQ22066209
The neighbor-joining method: a new method for reconstructing phylogenetic treesQ25939010
Confidence Limits on Phylogenies: an Approach using the BootstrapQ26778379
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequencesQ27860580
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomesQ27860838
Pseudomonas alcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile isolated from seawaterQ28185463
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotationQ28603064
Pseudomonads Rule Degradation of Polyaromatic Hydrocarbons in Aerated SedimentQ28607238
NCBI prokaryotic genome annotation pipelineQ28828718
SignalP 4.0: discriminating signal peptides from transmembrane regionsQ29547202
Validation List no. 103: Validation of publication of new names and new combinations previously effectively published outside the IJSEMQ45316120
Bacterial metabolism of polychlorinated biphenylsQ46441885
Functional analyses of Pseudomonas putida benzoate transporters expressed in the yeast Saccharomyces cerevisiaeQ46441965
Pseudomonas oleovorans subsp. lubricantis subsp. nov., and reclassification of Pseudomonas pseudoalcaligenes ATCC 17440T as later synonym of Pseudomonas oleovorans ATCC 8062 T.Q48066967
Broad substrate specificity of naphthalene- and biphenyl-utilizing bacteriaQ74086694
Field evaluation of in situ aerobic cometabolism of trichloroethylene and three dichloroethylene isomers using phenol and toluene as the primary substratesQ83323731
GenBankQ84894623
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger DatasetsQ29616345
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotesQ29616745
Pseudomonas chengduensis sp. nov., isolated from landfill leachateQ30666042
Circular genome visualization and exploration using CGViewQ31120465
Impacts of heavy metal contamination and phytoremediation on a microbial community during a twelve-month microcosm experimentQ33497585
Transmissible Plasmid Coding Early Enzymes of Naphthalene Oxidation in Pseudomonas putidaQ33784915
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.Q33853412
Characterization and role of tbuX in utilization of toluene by Ralstonia pickettii PKO1Q33889682
Dual-bioaugmentation strategy to enhance remediation of cocontaminated soilQ33989888
BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putidaQ33994918
Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spillQ34031002
Biodegradation of PCBs by ligninolytic fungi and characterization of the degradation products.Q34271919
The Pfam protein families database: towards a more sustainable futureQ34505322
Polychlorinated biphenyl (PCB)-degrading bacteria associated with trees in a PCB-contaminated siteQ34570615
The Transporter Classification Database (TCDB): recent advancesQ34674354
Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinaseQ34696950
PcaK, a high-affinity permease for the aromatic compounds 4-hydroxybenzoate and protocatechuate from Pseudomonas putidaQ35627831
benK encodes a hydrophobic permease-like protein involved in benzoate degradation by Acinetobacter sp. strain ADP1.Q35630694
Metabolism of and inhibition by chlorobenzoates in Pseudomonas putida P111.Q35727715
Biphenyl dioxygenases: functional versatilities and directed evolutionQ35855080
Environmental genomics: exploring the unmined richness of microbes to degrade xenobioticsQ35865801
Oxidation of substituted phenols by Pseudomonas putida F1 and Pseudomonas sp. strain JS6Q36070418
Degradation of trichloroethylene by toluene dioxygenase in whole-cell studies with Pseudomonas putida F1Q36070872
The Staden sequence analysis packageQ36823231
KEGG: new perspectives on genomes, pathways, diseases and drugsQ37556832
UniProt: the universal protein knowledgebaseQ37556842
Pseudomonas genomes: diverse and adaptableQ37848453
ZapE is a novel cell division protein interacting with FtsZ and modulating the Z-ring dynamicsQ38343804
A chromosomally based tod-luxCDABE whole-cell reporter for benzene, toluene, ethybenzene, and xylene (BTEX) sensingQ39561888
Biodegradation of petroleum hydrocarbons by psychrotrophic Pseudomonas strains possessing both alkane (alk) and naphthalene (nah) catabolic pathways.Q39803054
Cloning of a gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudoalcaligenesQ39965430
The Main Lines of the Natural Bacterial SystemQ40724111
The beta-ketoadipate pathway and the biology of self-identityQ41199628
Secondary compound hypothesis revisited: Selected plant secondary metabolites promote bacterial degradation of cis-1,2-dichloroethylene (cDCE).Q41436357
Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707Q42608900
Metabolic characterization and genes for the conversion of biphenyl in Dyella ginsengisoli LA-4.Q43975242
Toxicity assessment of mono-substituted benzenes and phenols using a Pseudomonas initial oxygen uptake assayQ45272998
P921main subjectgenomicsQ222046
whole genome sequencingQ2068526
Pseudomonas alcaliphilaQ7255000
P304page(s)3
P577publication date2018-02-01
P1433published inStandards in genomic sciencesQ22965585
P1476titleComplete genome sequence of Pseudomonas alcaliphila JAB1 (=DSM 26533), a versatile degrader of organic pollutants
P478volume13

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cites work (P2860)
Q89634399Assessment of Biodegradation Efficiency of Polychlorinated Biphenyls (PCBs) and Petroleum Hydrocarbons (TPH) in Soil Using Three Individual Bacterial Strains and Their Mixed Culture
Q92772823Novel PCB-degrading Rhodococcus strains able to promote plant growth for assisted rhizoremediation of historically polluted soils
Q92857597Time-Dependent Changes in Morphostructural Properties and Relative Abundances of Contributors in Pleurotus ostreatus/Pseudomonas alcaliphila Mixed Biofilms

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