The fluorescence properties and binding mechanism of SYTOX green, a bright, low photo-damage DNA intercalating agent.

scientific article published on 31 May 2015

The fluorescence properties and binding mechanism of SYTOX green, a bright, low photo-damage DNA intercalating agent. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1007/S00249-015-1027-8
P698PubMed publication ID26024786

P50authorMarcelo NollmannQ60041823
Diego I CattoniQ38545550
P2093author name stringShreyasi Thakur
P2860cites workCooperative effects on the formation of intercalation sitesQ39984758
Double bands in DNA gel elctrophoresis caused by bis-intercalating dyesQ40394698
Radiation Chemical Mechanisms of Single- and Double-Strand Break Formation in Irradiated SV40 DNAQ41155489
Interaction of oxazole yellow dyes with DNA studied with hybrid optical tweezers and fluorescence microscopyQ42176660
The kinetics of YOYO-1 intercalation into single molecules of double-stranded DNAQ42818663
Photobleaching of asymmetric cyanines used for fluorescence imaging of single DNA molecules.Q43708139
Synthesis, DNA-binding and photocleavage studies of ruthenium complexes [Ru(bpy)2(mitatp)]2+ and [Ru(bpy)2(nitatp)]2+.Q46046653
Visualization of Rad54, a chromatin remodeling protein, translocating on single DNA moleculesQ46202156
Multiple modes of Escherichia coli DNA gyrase activity revealed by force and torqueQ46492608
Cooperative and noncooperative binding of protein ligands to nucleic acid lattices: experimental approaches to the determination of thermodynamic parameters.Q52644727
Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.Q52904158
Critical energies for SSB and DSB induction in plasmid DNA by low-energy photons: action spectra for strand-break induction in plasmid DNA irradiated in vacuumQ64388462
DNA photocleavage by novel intercalating 6-(2-pyridinium)phenanthridinium viologensQ71816254
Quantifying force-dependent and zero-force DNA intercalation by single-molecule stretchingQ80237534
Dynamics and multiple stable binding modes of DNA intercalators revealed by single-molecule force spectroscopyQ82915142
Entropic elasticity of lambda-phage DNAQ28247727
A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.Q30477242
Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerasesQ30478358
Development of a mechanism-based, DNA staining protocol using SYTOX orange nucleic acid stain and DNA fragment sizing flow cytometryQ30945368
Processive translocation and DNA unwinding by individual RecBCD enzyme moleculesQ30980458
Molecular mechanisms and kinetics between DNA and DNA binding ligandsQ31123142
See me, feel me: methods to concurrently visualize and manipulate single DNA molecules and associated proteinsQ33347424
Real-time single-molecule observation of rolling-circle DNA replicationQ33401167
Sequence-directed DNA export guides chromosome translocation during sporulation in Bacillus subtilis.Q33911060
Biophysical characterization of DNA binding from single molecule force measurementsQ34091700
Estimating the persistence length of a worm-like chain molecule from force-extension measurementsQ34179878
Quantification of dye-mediated photodamage during single-molecule DNA imagingQ34224259
Mechanical and structural properties of YOYO-1 complexed DNAQ34246621
Structural considerations in the interaction of DNA and acridinesQ34249123
Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchangeQ34621437
DNA and its associated processes as targets for cancer therapyQ34625003
Oxidative damage to DNA: formation, measurement and biochemical features.Q35592841
Cooperative binding of m-AMSA to nucleic acidsQ36070745
Ionic effects on the elasticity of single DNA moleculesQ36181058
Cooperative effects in binding by bovine serum albumin. I. The binding of 1-anilino-8-naphthalenesulfonate. Fluorimetric titrationsQ36581255
Bacterial viability and antibiotic susceptibility testing with SYTOX green nucleic acid stain.Q36863740
Direct visualization of individual DNA molecules by fluorescence microscopy: characterization of the factors affecting signal/background and optimization of imaging conditions using YOYO.Q36866930
Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesisQ37118106
A novel assay for drug-DNA binding mode, affinity, and exclusion number: scanning force microscopyQ37233451
Binding kinetics of bisintercalator Triostin a with optical tweezers force mechanics.Q37418787
Analysis and interpretation of ligand-DNA binding isothermsQ38298086
Single- and double-strand photocleavage of DNA by YO, YOYO and TOTOQ39715877
Acidification of the oxygen scavenging system in single-molecule fluorescence studies: in situ sensing with a ratiometric dual-emission probeQ39859631
P433issue5
P304page(s)337-348
P577publication date2015-05-31
P1433published inEuropean Biophysics JournalQ5412316
P1476titleThe fluorescence properties and binding mechanism of SYTOX green, a bright, low photo-damage DNA intercalating agent
P478volume44

Reverse relations

cites work (P2860)
Q90396429A 3D Cell Death Assay to Quantitatively Determine Ferroptosis in Spheroids
Q38947265Acanthamoeba culbertsoni: Electron-Dense Granules in a Highly Virulent Clinical Isolate
Q64097243Anti-leishmanial activity of Brevinin 2R and its Lauric acid conjugate type against L. major: In vitro mechanism of actions and in vivo treatment potentials
Q100945841Characterizing microfluidic approaches for a fast and efficient reagent exchange in single-molecule studies
Q36077806Conservative Mechanisms of Extracellular Trap Formation by Annelida Eisenia andrei: Serine Protease Activity Requirement
Q36284680Dynamic Fluorescence Microscopy of Cellular Uptake of Intercalating Model Drugs by Ultrasound-Activated Microbubbles
Q64098124High content analysis enables high-throughput nematicide discovery screening for measurement of viability and movement behavior in response to natural product samples
Q52718264Optimization of Stress-Based Microfluidic Testing for Methicillin Resistance in Staphylococcusaureus Strains.
Q64268279Shining a Spotlight on DNA: Single-Molecule Methods to Visualise DNA
Q41857056Small Molecule-Induced Domain Swapping as a Mechanism for Controlling Protein Function and Assembly