Docking study and binding free energy calculation of poly (ADP-ribose) polymerase inhibitors.

scientific article published on 18 May 2010

Docking study and binding free energy calculation of poly (ADP-ribose) polymerase inhibitors. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1007/S00894-010-0728-2
P2888exact matchhttps://scigraph.springernature.com/pub.10.1007/s00894-010-0728-2
P698PubMed publication ID20480380

P50authorYoshiaki TanidaQ73477219
P2093author name stringMasaya Orita
Kazuki Ohno
Takashi Mitsui
Hideaki Fujitani
Tatsuya Niimi
Azuma Matsuura
P2860cites workNonequilibrium Equality for Free Energy DifferencesQ21698763
Canonical dynamics: Equilibrium phase-space distributionsQ21709091
Comparison of simple potential functions for simulating liquid waterQ26778447
Inhibitor-induced structural change of the active site of human poly(ADP-ribose) polymeraseQ27642912
GROMACS: fast, flexible, and freeQ27860998
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Automatic atom type and bond type perception in molecular mechanical calculationsQ29616744
A family of phosphodiesterase inhibitors discovered by cocrystallography and scaffold-based drug designQ31145317
4-[3-(4-cyclopropanecarbonylpiperazine-1-carbonyl)-4-fluorobenzyl]-2H-phthalazin-1-one: a novel bioavailable inhibitor of poly(ADP-ribose) polymerase-1.Q34013829
Role of the active-site solvent in the thermodynamics of factor Xa ligand bindingQ34748976
Poly(ADP-ribose) polymerase inhibitorsQ35060963
Pharmacological Modulation of Poly(ADP-ribose) Polymerase-Mediated Cell Death: Exploitation in Cancer ChemotherapyQ35565981
Poly(ADP-ribose) polymerase activation mediates 1-methyl-4-phenyl-1, 2,3,6-tetrahydropyridine (MPTP)-induced parkinsonismQ36369850
Methods for calculating the entropy and free energy and their application to problems involving protein flexibility and ligand bindingQ37276103
Free energy via molecular simulation: applications to chemical and biomolecular systemsQ38648060
Protein-ligand binding free energy calculation by the Smooth Reaction Path Generation (SRPG) MethodQ43266434
Rational approaches to discovery of orally active and brain-penetrable quinazolinone inhibitors of poly(ADP-ribose)polymeraseQ45007061
Evaluating the Accuracy of the Quasiharmonic ApproximationQ46144156
Massively parallel computation of absolute binding free energy with well-equilibrated statesQ47948501
Pharmacologic inhibition of poly(ADP-ribose) polymerase is neuroprotective following traumatic brain injury in rats.Q48890892
GROMACS: A message-passing parallel molecular dynamics implementationQ51756282
General atomic and molecular electronic structure systemQ56017006
GROMACS 3.0: a package for molecular simulation and trajectory analysisQ57082068
Molecular dynamics with coupling to an external bathQ57569060
Equilibrium Free Energies from Nonequilibrium Measurements Using Maximum-Likelihood MethodsQ79283802
Accurate prediction of the relative potencies of members of a series of kinase inhibitors using molecular docking and MM-GBSA scoringQ80048492
High-Level ab Initio Calculations To Improve Protein Backbone Dihedral ParametersQ86812363
P433issue2
P304page(s)383-389
P577publication date2010-05-18
P1433published inJournal of Molecular ModelingQ1709860
P1476titleDocking study and binding free energy calculation of poly (ADP-ribose) polymerase inhibitors
P478volume17

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cites work (P2860)
Q34036347A role of intracellular mono-ADP-ribosylation in cancer biology
Q59010364ITP Adjuster 1.0: A New Utility Program to Adjust Charges in the Topology Files Generated by the PRODRG Server

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