Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing.

scientific article published on 25 March 2010

Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/ISMEJ.2010.26
P698PubMed publication ID20336159
P5875ResearchGate publication ID42542334

P50authorKa Hou ChuQ26260325
Hoi Shan KwanQ55807539
Man Kit CheungQ86701209
P2093author name stringChun Hang Au
Chong Kim Wong
P2860cites workComposition and temporal variability of picoeukaryote communities at a coastal site of the English Channel from 18S rDNA sequencesQ22305405
Genome sequencing in microfabricated high-density picolitre reactorsQ24544260
Microbial diversity in the deep sea and the underexplored "rare biosphere"Q24685531
Basic local alignment search toolQ25938991
How Escherichia coli can bias the results of molecular cloning: preferential selection of defective genomes of hepatitis C virus during the cloning procedureQ27491290
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequencesQ29547172
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimatesQ29616592
Accuracy and quality of massively parallel DNA pyrosequencingQ29622857
Widespread distribution of a unique marine protistan lineageQ30494229
Novel Eukaryotic Lineages Inferred from Small-Subunit rRNA Analyses of Oxygen-Depleted Marine EnvironmentsQ30924764
Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencingQ30993845
Global biodiversity patterns of marine phytoplankton and zooplanktonQ31081809
Genetic diversity of small eukaryotes in lakes differing by their trophic statusQ33224564
Diversity of the microeukaryotic community in sulfide-rich Zodletone Spring (Oklahoma)Q33224568
Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA geneQ33228592
Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western North Atlantic (Sargasso Sea and Gulf Stream).Q33283352
Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approachQ33330100
The tragedy of the uncommon: understanding limitations in the analysis of microbial diversityQ33332445
Widespread occurrence and genetic diversity of marine parasitoids belonging to Syndiniales (Alveolata).Q33366841
A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genesQ33487154
Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approachesQ33497555
Unexpected diversity of small eukaryotes in deep-sea Antarctic planktonQ33935367
Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversityQ33935372
Picobiliphytes: a marine picoplanktonic algal group with unknown affinities to other eukaryotesQ34601061
The diversity of small eukaryotic phytoplankton (< or =3 microm) in marine ecosystems.Q37194941
Microeukaryotic diversity in marine environments, an analysis of surface layer sediments from the East Sea.Q42661404
HPLC pigment analysis of marine phytoplankton during a red tide occurrence in Tolo Harbour, Hong KongQ44515946
Diversity estimates of microeukaryotes below the chemocline of the anoxic Mariager Fjord, Denmark.Q50544482
Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing.Q51664962
DISTRIBUTION, PHYLOGENY, AND GROWTH OF COLD-ADAPTED PICOPRASINOPHYTES IN ARCTIC SEASQ57211594
Genetic diversity of picoeukaryotes in a semi-enclosed harbour in the subtropical western Pacific OceanQ57588234
Competitive Exclusion in Herbaceous VegetationQ59065321
P433issue8
P921main subjectgenetic diversityQ585259
pyrosequencingQ2342248
coastal watersQ105343374
P304page(s)1053-1059
P577publication date2010-03-25
P1433published inThe ISME JournalQ7741240
P1476titleComposition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing.
P478volume4

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cites work (P2860)
Q3370162718S rDNA sequences from microeukaryotes reveal oil indicators in mangrove sediment
Q35719958An Improved DNA Extraction Method for Efficient and Quantitative Recovery of Phytoplankton Diversity in Natural Assemblages
Q34013531An all-taxon microbial inventory of the Moorea coral reef ecosystem
Q35887300Biodiversity patterns of plankton assemblages at the extremes of the Red Sea.
Q26740137Censusing marine eukaryotic diversity in the twenty-first century
Q34550462Choice of pore size can introduce artefacts when filtering picoeukaryotes for molecular biodiversity studies
Q35010219Combined amplicon pyrosequencing assays reveal presence of the apicomplexan "type-N" (cf. Gemmocystis cylindrus) and Chromera velia on the Great Barrier Reef, Australia
Q35756248Comparative study of the validity of three regions of the 18S-rRNA gene for massively parallel sequencing-based monitoring of the planktonic eukaryote community
Q34124232Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity
Q34516839Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems
Q34699402Composition of heterotrophic flagellates in coastal waters of different trophic status.
Q40433553DNA metabarcoding reveals that 200 μm size-fractionated filtering is unable to discriminate between planktonic microbial and large eukaryotes
Q30575512Denoising PCR-amplified metagenome data
Q35941175Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean
Q55310377Diversity and potential activity patterns of planktonic eukaryotic microbes in a mesoeutrophic coastal area (eastern English Channel).
Q42677066Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.
Q40359801Effects of Hypoxia on the Phylogenetic Composition and Species Distribution of Protists in a Subtropical Harbor
Q35180091Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach
Q35692926Enhanced salinities, as a proxy of seawater desalination discharges, impact coastal microbial communities of the eastern Mediterranean Sea.
Q57900705Evaluation of Alternative High-Throughput Sequencing Methodologies for the Monitoring of Marine Picoplanktonic Biodiversity Based on rRNA Gene Amplicons
Q35563098Evidence for an active rare biosphere within freshwater protists community.
Q92375874Functional Differences in the Blooming Phytoplankton Heterosigma akashiwo and Prorocentrum donghaiense Revealed by Comparative Metaproteomics
Q21183998Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
Q34600189General patterns of diversity in major marine microeukaryote lineages
Q90372143Glacier algae foster ice-albedo feedback in the European Alps
Q35764054Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Q35425634High genetic diversity and novelty in eukaryotic plankton assemblages inhabiting saline lakes in the Qaidam basin
Q34998101Impact of subacute ruminal acidosis on the diversity of liquid and solid-associated bacteria in the rumen of goats
Q36318493Integrated 'Omics', Targeted Metabolite and Single-cell Analyses of Arctic Snow Algae Functionality and Adaptability
Q33798727Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes
Q41114745Lateral transfer of eukaryotic ribosomal RNA genes: an emerging concern for molecular ecology of microbial eukaryotes
Q35676650Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing
Q39143579Microbial Community Analysis of Colored Snow from an Alpine Snowfield in Northern Japan Reveals the Prevalence of Betaproteobacteria with Snow Algae.
Q40777885Microbial diversity in shallow-water hydrothermal sediments of Kueishan Island, Taiwan as revealed by pyrosequencing
Q33815152Microbial diversity of a Brazilian coastal region influenced by an upwelling system and anthropogenic activity
Q35489258Microbial diversity on Icelandic glaciers and ice caps
Q35639985Microbiota Dynamics Associated with Environmental Conditions and Potential Roles of Cellulolytic Communities in Traditional Chinese Cereal Starter Solid-State Fermentation
Q34112406Molecular detection, quantification, and diversity evaluation of microalgae
Q58133964Patchy-distributed ciliate (Protozoa) diversity of eight polar communities as determined by 454 amplicon pyrosequencing
Q35127250Performance comparison of genetic markers for high-throughput sequencing-based biodiversity assessment in complex communities
Q34630217Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity
Q43518372Phylogenetic detection of novel Cryptomycota in an Iowa (United States) aquifer and from previously collected marine and freshwater targeted high-throughput sequencing sets
Q35201349Picoeukaryote plankton composition off West Spitsbergen at the entrance to the Arctic Ocean.
Q35015362Picoplankton dynamics and picoeukaryote diversity in a hyper-eutrophic subtropical lagoon
Q34425076Prevalent ciliate symbiosis on copepods: high genetic diversity and wide distribution detected using small subunit ribosomal RNA gene
Q39895007Protist distribution in the Western Fram Strait in summer 2010 based on 454-pyrosequencing of 18S rDNA.
Q92893657Protist diversity and community assembly in surface sediments of the South China Sea
Q33827930Reproducibility and quantitation of amplicon sequencing-based detection
Q46464245Seasonal and geographical distribution of near-surface small photosynthetic eukaryotes in the western North Pacific determined by pyrosequencing of 18S rDNA.
Q34539072Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes
Q34568357Sputum microbiota in tuberculosis as revealed by 16S rRNA pyrosequencing
Q89681774Synchrony Degree of Dietary Energy and Nitrogen Release Influences Microbial Community, Fermentation, and Protein Synthesis in a Rumen Simulation System
Q35155204Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia
Q89095176Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site
Q34741626Termite hindguts and the ecology of microbial communities in the sequencing age.
Q92494862The Biodiversity and Geochemistry of Cryoconite Holes in Queen Maud Land, East Antarctica
Q37031059The biogeography of red snow microbiomes and their role in melting arctic glaciers
Q52802774The diversity of ice algal communities on the Greenland Ice Sheet as revealed by oligotyping.
Q35076750Water stratification affects the microeukaryotic community in a subtropical deep reservoir.

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