Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira.

scientific article published on 7 March 2018

Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira. is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1101298914
P356DOI10.1038/S41396-018-0083-3
P932PMC publication ID6018701
P698PubMed publication ID29515170

P50authorThomas Sicheritz-PontenQ28741758
Barth F SmetsQ39274431
Arnaud DechesneQ47423995
Anders Gorm PedersenQ56510441
Alejandro PalomoQ58122202
Jane FowlerQ82271377
P2093author name stringS Jane Fowler
P2860cites workRelaxed phylogenetics and dating with confidenceQ21146068
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomesQ21284200
Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaeaQ24676726
MrBayes 3: Bayesian phylogenetic inference under mixed modelsQ26778438
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal OmegaQ27860809
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
Physically associated enzymes produce and metabolize 2-hydroxy-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putidaQ28354983
A biochemical approach to study the role of the terminal oxidases in aerobic respiration in Shewanella oneidensis MR-1Q28539021
BEAST 2: a software platform for Bayesian evolutionary analysisQ28660145
Nitrospira marina gen. nov. sp. nov.: a chemolithotrophic nitrite-oxidizing bacteriumQ29394046
TimeTree: a public knowledge-base of divergence times among organismsQ29547188
Prodigal: prokaryotic gene recognition and translation initiation site identificationQ29547611
Evolution in bacteria: evidence for a universal substitution rate in cellular genomesQ29618187
In situ characterization of Nitrospira-like nitrite-oxidizing bacteria active in wastewater treatment plantsQ30756686
Anvi'o: an advanced analysis and visualization platform for 'omics dataQ31010932
Toward almost closed genomes with GapFillerQ33353810
A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteriaQ34067963
genoPlotR: comparative gene and genome visualization in RQ34110403
The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite OxidizerQ34329676
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomesQ34346732
NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira.Q34377238
A Bayesian method for analyzing lateral gene transfer.Q34406222
Oxygenated complex of cytochrome bd from Escherichia coli: stability and photolability.Q34441256
Cyanate as an energy source for nitrifiersQ34487384
Complete nitrification by Nitrospira bacteriaQ34503171
Complete nitrification by a single microorganismQ34503178
Functionally relevant diversity of closely related Nitrospira in activated sludge.Q34771327
Wolinella succinogenes quinol:fumarate reductase-2.2-A resolution crystal structure and the E-pathway hypothesis of coupled transmembrane proton and electron transferQ34985076
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequencesQ35109643
The evolution of respiratory chain complex I from a smaller last common ancestor consisting of 11 protein subunitsQ35130054
The cytochrome bd respiratory oxygen reductasesQ35209505
MeDuSa: a multi-draft based scaffolder.Q35587082
Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus NitrospiraQ36056928
Non-HKD phospholipase D enzymes: new players in phosphatidic acid signaling?Q36226844
Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survivalQ36756517
Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment systemQ36768325
Diversity, abundance and activity of ammonia-oxidizing microorganisms in fine particulate matter.Q37492928
Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox NitrospiraQ37611711
Nucleosomes accelerate transcription factor dissociation.Q37631853
Metabolic characteristics and importance of the universal methionine salvage pathway recycling methionine from 5'-methylthioadenosine.Q37641189
The stressosome: molecular architecture of a signalling hub.Q37775649
Methionine salvage and S-adenosylmethionine: essential links between sulfur, ethylene and polyamine biosynthesis.Q38093712
Cytochrome bd oxidase and bacterial tolerance to oxidative and nitrosative stressQ38184237
AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the EnvironmentQ38287479
Metagenomic Evidence for the Presence of Comammox Nitrospira-Like Bacteria in a Drinking Water System.Q38379560
Comammox in drinking water systems.Q38846739
A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria.Q38855546
Phylogenomic analysis and predicted physiological role of the proton-translocating NADH:quinone oxidoreductase (complex I) across bacteriaQ39018140
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimonyQ39788032
Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.Q39809771
Copper Hypersensitivity and Uptake in Pseudomonas syringae Containing Cloned Components of the Copper Resistance OperonQ39857609
Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filtersQ39939880
Different Functions of Phylogenetically Distinct Bacterial Complex I IsozymesQ40034841
Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineagesQ40880241
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomesQ40936712
Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium "Candidatus Nitrospira nitrosa"Q41186875
An alkaline phosphatase/phosphodiesterase, PhoD, induced by salt stress and secreted out of the cells of Aphanothece halophytica, a halotolerant cyanobacteriumQ41817540
Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in Rhodobacter sphaeroides 2.4.1.Q41911687
Dissection of ammonium uptake systems in Corynebacterium glutamicum: mechanism of action and energetics of AmtA and AmtB.Q42063280
Heme concentration dependence and metalloporphyrin inhibition of the system I and II cytochrome c assembly pathwaysQ42089689
In vivo functional characterization of the Escherichia coli ammonium channel AmtB: evidence for metabolic coupling of AmtB to glutamine synthetaseQ42109194
Enrichment and physiological characterization of a novel Nitrospira-like bacterium obtained from a marine spongeQ42735048
Phosphorus and nitrogen profile measurements to locate phosphorus limitation in a fixed bed filterQ43311665
Nitrite concentration influences the population structure of Nitrospira-like bacteriaQ43337659
Copper deficiency can limit nitrification in biological rapid sand filters for drinking water productionQ43346859
Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidationQ44602896
Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle.Q46315566
SylvX: a viewer for phylogenetic tree reconciliationsQ46646719
Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludgeQ46944612
Nitrospira community composition in nitrifying reactors operated with two different dissolved oxygen levels.Q47376486
An outer-membrane porin inducible by short-chain amides and urea in the methylotrophic bacterium Methylophilus methylotrophusQ48047775
Transport characteristics of mammalian Rh and Rh glycoproteins expressed in heterologous systems.Q50651385
Why is metabolic labour divided in nitrification?Q51223837
Variability of the transporter gene complement in ammonia-oxidizing archaea.Q51413937
Reaction of Mycobacterium tuberculosis truncated hemoglobin O with hydrogen peroxide: evidence for peroxidatic activity and formation of protein-based radicalsQ79544836
Functional and physiological evidence for a rhesus-type ammonia transporter in Nitrosomonas europaeaQ80562676
Phosphorus limitation in nitrifying groundwater filtersQ83157391
Expressions of alkaline phosphatase genes during phosphate starvation are under positive influences of multiple cell wall hydrolase genes in Bacillus subtilisQ89303466
P433issue7
P921main subjectcomparative genomicsQ1147112
niche differentiationQ3027700
P304page(s)1779-1793
P577publication date2018-03-07
P1433published inThe ISME JournalQ7741240
P1476titleComparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira.
P478volume12

Reverse relations

cites work (P2860)
Q90406966Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems
Q96577377Comammox Nitrospira within the Yangtze River continuum: community, biogeography, and ecological drivers
Q58555212Complete nitrification: insights into the ecophysiology of comammox Nitrospira
Q90206541Controls and Adaptive Management of Nitrification in Agricultural Soils
Q61805098Design and Assessment of Species-Level qPCR Primers Targeting Comammox
Q102059099Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification
Q41186875Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium "Candidatus Nitrospira nitrosa"
Q93216952High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
Q104559388Hydroxylamine and the nitrogen cycle: A review
Q91281786Long solids retention times and attached growth phase favor prevalence of comammox bacteria in nitrogen removal systems
Q64097768Low yield and abiotic origin of NO formed by the complete nitrifier Nitrospira inopinata
Q98563446Metagenomic profiling of ammonia- and methane-oxidizing microorganisms in two sequential rapid sand filters
Q92155108Metagenomic recovery of two distinct comammox Nitrospira from the terrestrial subsurface
Q104484316N2O and NOy production by the comammox bacterium Nitrospira inopinata in comparison with canonical ammonia oxidizers
Q98187105Nutrient removal performance and microbiome of an energy-efficient reciprocation MLE-MBR operated under hypoxic conditions
Q104515815Stronger environmental adaptation of rare rather than abundant bacterioplankton in response to dredging in eutrophic Lake Nanhu (Wuhan, China)
Q58764854The Genomic Potentials of NOB and Comammox in River Sediment Are Impacted by Native Freshwater Mussels

Search more.