Gene-Sharing Networks Reveal Organizing Principles of Transcriptomes in Arabidopsis and Other Multicellular Organisms

scientific article published on April 18, 2012

Gene-Sharing Networks Reveal Organizing Principles of Transcriptomes in Arabidopsis and Other Multicellular Organisms is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1105/TPC.111.094748
P953full work available at URLhttp://www.plantcell.org/content/plantcell/24/4/1362.full.pdf
https://syndication.highwire.org/content/doi/10.1105/tpc.111.094748
P932PMC publication ID3398552
P698PubMed publication ID22517316
P5875ResearchGate publication ID224769741

P50authorTimothy E GookinQ40756099
P2093author name stringZhixin Zhao
Song Li
Sona Pandey
Liza Wilson
Sarah M. Assmann
P2860cites workGenevestigator v3: a reference expression database for the meta-analysis of transcriptomesQ21342839
Near linear time algorithm to detect community structures in large-scale networksQ50891765
Expression profiling of the whole Arabidopsis shaggy-like kinase multigene family by real-time reverse transcriptase-polymerase chain reactionQ52113861
G-protein complex mutants are hypersensitive to abscisic acid regulation of germination and postgermination developmentQ53600467
CalS7 encodes a callose synthase responsible for callose deposition in the phloem.Q54396215
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analysesQ81859888
Finding community structure in very large networksQ21686179
Building a Multicellular OrganismQ22065391
A gene atlas of the mouse and human protein-encoding transcriptomesQ24568043
A gene-coexpression network for global discovery of conserved genetic modulesQ29614451
A gene expression map of Arabidopsis thaliana developmentQ29617330
Genome-wide insertional mutagenesis of Arabidopsis thalianaQ29617345
Improved scoring of functional groups from gene expression data by decorrelating GO graph structureQ31036410
CressExpress: a tool for large-scale mining of expression data from ArabidopsisQ31155017
Just-in-time transcription program in metabolic pathwaysQ33202257
Detecting and profiling tissue-selective genesQ33242904
A gene expression map of the Arabidopsis rootQ33339472
Drought induction of Arabidopsis 9-cis-epoxycarotenoid dioxygenase occurs in vascular parenchyma cellsQ33343412
Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in riceQ33351175
Functional proteomics of Arabidopsis thaliana guard cells uncovers new stomatal signaling pathwaysQ33396426
A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchiesQ33397283
A systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in ArabidopsisQ33419831
Comparison of scores for bimodality of gene expression distributions and genome-wide evaluation of the prognostic relevance of high-scoring genes.Q33586734
Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein actionQ33597701
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thalianaQ33801141
The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses.Q33836286
Tissue-specific disallowance of housekeeping genes: the other face of cell differentiation.Q34452313
ATTED-II Updates: Condition-Specific Gene Coexpression to Extend Coexpression Analyses and Applications to a Broad Range of Flowering PlantsQ34566240
Update of ASRP: the Arabidopsis Small RNA Project databaseQ36454206
Universality and flexibility in gene expression from bacteria to humanQ37094613
Sumoylation of ABI5 by the Arabidopsis SUMO E3 ligase SIZ1 negatively regulates abscisic acid signalingQ37146837
The origins of multicellularity and the early history of the genetic toolkit for animal developmentQ37317007
Co-expression tools for plant biology: opportunities for hypothesis generation and caveatsQ37588006
PlaNet: combined sequence and expression comparisons across plant networks derived from seven speciesQ38502841
NADPH oxidase AtrbohD and AtrbohF genes function in ROS-dependent ABA signaling in Arabidopsis.Q39758932
GeneCAT--novel webtools that combine BLAST and co-expression analyses.Q39786353
Detecting selective expression of genes and proteinsQ40413381
Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thalianaQ41985204
PACK: Profile Analysis using Clustering and Kurtosis to find molecular classifiers in cancerQ42495001
Gene co-expression network topology provides a framework for molecular characterization of cellular stateQ45205691
A high-resolution root spatiotemporal map reveals dominant expression patterns.Q50659214
P433issue4
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
multicellularityQ110243984
P304page(s)1362-1378
P577publication date2012-04-18
P1433published inThe Plant CellQ3988745
P1476titleGene-sharing networks reveal organizing principles of transcriptomes in Arabidopsis and other multicellular organisms
Gene-Sharing Networks Reveal Organizing Principles of Transcriptomes in Arabidopsis and Other Multicellular Organisms
P478volume24

Reverse relations

cites work (P2860)
Q39383513A combination of gene expression ranking and co-expression network analysis increases discovery rate in large-scale mutant screens for novel Arabidopsis thaliana abiotic stress genes.
Q30489744A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling
Q41457751Correlation networks visualization
Q41930153Exploring the shallow end; estimating information content in transcriptomics studies
Q37451176Illuminating a plant's tissue-specific metabolic diversity using computational metabolomics and information theory
Q47127340Inference of Transcription Regulatory Network in Low Phytic Acid Soybean Seeds
Q34500054Integrating the interactome and the transcriptome of Drosophila
Q35185644Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins
Q44609278Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis.
Q38085653Microgenomics: Genome-Scale, Cell-Specific Monitoring of Multiple Gene Regulation Tiers
Q30490696Nicotiana attenuata Data Hub (NaDH): an integrative platform for exploring genomic, transcriptomic and metabolomic data in wild tobacco
Q35272637Protocol: a fast and simple in situ PCR method for localising gene expression in plant tissue
Q36057389SUMO proteases ULP1c and ULP1d are required for development and osmotic stress responses in Arabidopsis thaliana.
Q46574634Seed Production Affects Maternal Growth and Senescence in Arabidopsis

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