| Q46030185 | "Patchy-tachy" leads to false positives for recombination. |
| Q24798965 | A novel exploratory method for visual recombination detection |
| Q42618450 | A reanalysis of the indirect evidence for recombination in human mitochondrial DNA. |
| Q51940503 | A revised evolutionary history of the CYP1A subfamily: gene duplication, gene conversion, and positive selection. |
| Q34588500 | A simple and robust statistical test for detecting the presence of recombination |
| Q34373149 | An alignment-free test for recombination |
| Q35846218 | An exact nonparametric method for inferring mosaic structure in sequence triplets |
| Q37042458 | An exploratory algorithm to identify intra-host recombinant viral sequences |
| Q37876970 | Analysing recombination in nucleotide sequences |
| Q43239115 | Approximating the coalescent with recombination |
| Q96303724 | Characterization of Burkholderia cepacia Complex Core Genome and the Underlying Recombination and Positive Selection |
| Q37197242 | Choosing and using introns in molecular phylogenetics. |
| Q30586881 | Computer programs and methodologies for the simulation of DNA sequence data with recombination |
| Q33257741 | Detecting recombination in evolving nucleotide sequences |
| Q30884546 | Estimating recombination rates from population-genetic data |
| Q33950030 | Evaluation of methods for detecting recombination from DNA sequences: computer simulations |
| Q30688689 | Evaluation of methods for detecting recombination from DNA sequences: empirical data |
| Q35220617 | Evidence for recombination in Mycobacterium tuberculosis |
| Q57765717 | Evidence for recombination in scorpion mitochondrial DNA (Scorpiones: Buthidae) |
| Q34106726 | Evidence for widespread reticulate evolution within human duplicons |
| Q45366549 | Evidence of intra-segmental homologous recombination in influenza A virus |
| Q42651864 | Evidence of recombination in the norovirus capsid gene |
| Q35742087 | Evidence of recombination within human alpha-papillomavirus |
| Q33900310 | Evolution of puma lentivirus in bobcats (Lynx rufus) and mountain lions (Puma concolor) in North America |
| Q28770060 | Evolutionary spread and recombination of porcine endogenous retroviruses in the suiformes |
| Q35623008 | Extensive genomic variation within clonal complexes of Neisseria meningitidis. |
| Q24797658 | Gene conversion homogenizes the CMT1A paralogous repeats |
| Q34504922 | Genealogy-based methods for inference of historical recombination and gene flow and their application in Saccharomyces cerevisiae |
| Q87844388 | Genetic Analysis of the Listeria Pathogenicity Island 1 of Listeria monocytogenes 1/2a and 4b Isolates |
| Q33359771 | Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes |
| Q28730339 | HGT turbulence: Confounding phylogenetic influence of duplicative horizontal transfer and differential gene conversion |
| Q34715943 | How good are indirect tests at detecting recombination in human mtDNA? |
| Q34507120 | Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. |
| Q43742510 | Interclade recombination in porcine parvovirus strains |
| Q35998938 | Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial |
| Q38731747 | MinPD: distance-based phylogenetic analysis and recombination detection of serially-sampled HIV quasispecies |
| Q59158907 | Mitochondrial introgression and interspecies recombination in the species complex |
| Q57196959 | Molecular phylogenetics for conservation biology |
| Q33536158 | OrgConv: detection of gene conversion using consensus sequences and its application in plant mitochondrial and chloroplast homologs |
| Q47313425 | Phylogeography of Cavernularia hultenii: evidence of slow genetic drift in a widely disjunct lichen |
| Q37343249 | Population Genetics of Hirsutella rhossiliensis, a Dominant Parasite of Cyst Nematode Juveniles on a Continental Scale. |
| Q34019204 | Properties of consensus methods for inferring species trees from gene trees |
| Q48024454 | Recco: recombination analysis using cost optimization |
| Q53093599 | Recombination detection under evolutionary scenarios relevant to functional divergence. |
| Q35943748 | Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method |
| Q41927597 | Recombination in feline immunodeficiency virus genomes from naturally infected cougars |
| Q50457176 | Recombination in mitochondrial DNA of European mussels Mytilus. |
| Q38301018 | Recombination in viruses: mechanisms, methods of study, and evolutionary consequences. |
| Q60921530 | Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex |
| Q28764677 | Reconstructing patterns of reticulate evolution in plants |
| Q33397132 | Revealing the hidden complexities of mtDNA inheritance |
| Q38636491 | Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach |
| Q42090048 | Statistical Analysis on Detecting Recombination Sites in DNA-β Satellites Associated with Old World Geminiviruses |
| Q35069715 | Statistical bioinformatic methods in microbial genome analysis |
| Q46738351 | The effects of recombination, mutation and selection on the evolution of the Rp1 resistance genes in grasses |
| Q46887599 | The impact of intragenic recombination on phylogenetic reconstruction at the sectional level in Eucalyptus when using a single copy nuclear gene (cinnamoyl CoA reductase). |
| Q33889347 | Virulence evolution of the human pathogen Neisseria meningitidis by recombination in the core and accessory genome |
| Q45886363 | Wolbachia and other endosymbiont infections in spiders |