| scholarly article | Q13442814 |
| P356 | DOI | 10.1002/JMR.1146 |
| P698 | PubMed publication ID | 22038805 |
| P2093 | author name string | Yan Wang | |
| Yanyan Zhu | |||
| Yaru Wang | |||
| Guangju Chen | |||
| P2860 | cites work | Translating the Histone Code | Q22065840 |
| Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells | Q24535831 | ||
| Synthesis and applications of polyamine amino acid residues: improving the bioactivity of an analgesic neuropeptide, neurotensin | Q24647835 | ||
| Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A | Q27660274 | ||
| The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition | Q27731469 | ||
| Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions | Q27733960 | ||
| Recognition of the DNA minor groove by pyrrole-imidazole polyamides | Q28182798 | ||
| Highly efficient endogenous human gene correction using designed zinc-finger nucleases | Q28243157 | ||
| Genome editing with engineered zinc finger nucleases | Q28290795 | ||
| An improved zinc-finger nuclease architecture for highly specific genome editing | Q28307951 | ||
| A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations | Q29547632 | ||
| Development and testing of a general amber force field | Q29547642 | ||
| Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers | Q29615408 | ||
| Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models | Q29616389 | ||
| The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids | Q29616630 | ||
| NMR and molecular dynamics studies of the hydration of a zinc finger-DNA complex | Q30628553 | ||
| Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting | Q33627552 | ||
| Targeted mutagenesis using zinc-finger nucleases in Arabidopsis | Q33836378 | ||
| Induced fit and "lock and key" recognition of 5S RNA by zinc fingers of transcription factor IIIA. | Q33992821 | ||
| Functional genomics, proteomics, and regulatory DNA analysis in isogenic settings using zinc finger nuclease-driven transgenesis into a safe harbor locus in the human genome | Q34018343 | ||
| Design of sequence-specific DNA-binding molecules | Q34038863 | ||
| Oxidative Strand Scission of Nucleic Acids: Routes Initiated by Hydrogen Abstraction from the Sugar Moiety | Q34114449 | ||
| Chemical nucleases | Q34459868 | ||
| Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes | Q35605918 | ||
| Targeted gene addition into a specified location in the human genome using designed zinc finger nucleases | Q35645641 | ||
| The design of functional DNA-binding proteins based on zinc finger domains. | Q35660878 | ||
| Affinity and specificity of protein U1A-RNA complex formation based on an additive component free energy model | Q36082576 | ||
| DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone | Q36275451 | ||
| Endogenous reactive intermediates as modulators of cell signaling and cell death. | Q36399709 | ||
| Experimentally based contact energies decode interactions responsible for protein-DNA affinity and the role of molecular waters at the binding interface | Q37259073 | ||
| A simple ligand that selectively targets CUG trinucleotide repeats and inhibits MBNL protein binding. | Q37364023 | ||
| Sequence-specific DNA binding by a two zinc-finger peptide from the Drosophila melanogaster Tramtrack protein | Q38327426 | ||
| A model of the structure of HOO-Co.bleomycin bound to d(CCAGTACTGG): recognition at the d(GpT) site and implications for double-stranded DNA cleavage. | Q38346241 | ||
| Site-selective and hydrolytic two-strand scission of double-stranded DNA using Ce(IV)/EDTA and pseudo-complementary PNA. | Q40406122 | ||
| The site-specific installation of methyl-lysine analogs into recombinant histones | Q41978659 | ||
| A-Tract bending: insights into experimental structures by computational models | Q42632771 | ||
| Selective DNA strand scission with binuclear copper complexes: implications for an active Cu2-O2 species. | Q43008997 | ||
| Zinc finger proteins as templates for metal ion exchange: Substitution effects on the C-finger of HIV nucleocapsid NCp7 using M(chelate) species (M=Pt, Pd, Au). | Q43289589 | ||
| Design of an adenosine analogue that selectively improves the affinity of a mutant U1A protein for RNA. | Q44326039 | ||
| Direct hydrogen-atom abstraction by activated bleomycin: an experimental and computational study | Q44469471 | ||
| Oxygen activation by the noncoupled binuclear copper site in peptidylglycine alpha-hydroxylating monooxygenase. Reaction mechanism and role of the noncoupled nature of the active site | Q44841228 | ||
| Trifunctional dinuclear platinum complexes as DNA-protein cross-linking agents. | Q44903022 | ||
| The activation of tertiary carboxamides in metal complexes: an experimental and theoretical study on the methanolysis of acylated bispicolylamine copper(II) complexes | Q44981713 | ||
| DNA cleavage by copper-ATCUN complexes. Factors influencing cleavage mechanism and linearization of dsDNA. | Q46532506 | ||
| Thiolate bridging and metal exchange in adducts of a zinc finger model and Pt(II) complexes: biomimetic studies of protein/Pt/DNA interactions | Q46636860 | ||
| Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model | Q47715113 | ||
| Molecular dynamics and thermodynamics of protein-RNA interactions: mutation of a conserved aromatic residue modifies stacking interactions and structural adaptation in the U1A-stem loop 2 RNA complex | Q49311191 | ||
| Oxidative DNA cleavage promoted by multinuclear copper complexes: activity dependence on the complex structure. | Q51186343 | ||
| Evidence for the direct involvement of the proteasome in the proteolytic processing of the Aspergillus nidulans zinc finger transcription factor PacC. | Q51976172 | ||
| Molecular dynamics with coupling to an external bath | Q57569060 | ||
| P4510 | describes a project that uses | molecular dynamics simulation | Q901663 |
| P433 | issue | 6 | |
| P304 | page(s) | 981-994 | |
| P577 | publication date | 2011-11-01 | |
| P1433 | published in | Journal of Molecular Recognition | Q3017054 |
| P1476 | title | Structural analysis of zinc-finger (TTK) + [Cu(BPA)]2+ /[Cu(IDB)]2+ + DNA complexes: an investigation by molecular dynamics simulation. | |
| P478 | volume | 24 |
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