Biological species in the viral world.

scientific article

Biological species in the viral world. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1073/PNAS.1717593115
P932PMC publication ID6003344
P698PubMed publication ID29784828

P50authorLouis-Marie BobayQ63865194
Howard OchmanQ88698176
P2093author name stringHoward Ochman
P2860cites workAn expanded inventory of conserved meiotic genes provides evidence for sex in Trichomonas vaginalisQ21092188
Patterns of gene flow define species of thermophilic ArchaeaQ21145744
The chastity of amoebae: re-evaluating evidence for sex in amoeboid organismsQ22065937
Pattern pluralism and the Tree of Life hypothesisQ22066333
The Phage Proteomic Tree: a genome-based taxonomy for phageQ24539335
Expression of animal virus genomesQ24618186
Order to the viral universeQ24627197
Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene sizeQ24634617
Identifying bacterial genes and endosymbiont DNA with GlimmerQ24653724
Network-Thinking: Graphs to Analyze Microbial Complexity and EvolutionQ26771616
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsQ27860746
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
An efficient algorithm for large-scale detection of protein familiesQ28131838
Application of phylogenetic networks in evolutionary studiesQ28276801
A phylogenomic inventory of meiotic genes; evidence for sex in Giardia and an early eukaryotic origin of meiosisQ28304004
Genomic and functional characteristics of human cytomegalovirus revealed by next-generation sequencingQ28541706
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formationQ28757646
Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral familiesQ28804212
Search and clustering orders of magnitude faster than BLASTQ29547431
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic treesQ29614558
Shifting the genomic gold standard for the prokaryotic species definitionQ29616599
Methods for virus classification and the challenge of incorporating metagenomic sequence data.Q30970470
The lambda red proteins promote efficient recombination between diverged sequences: implications for bacteriophage genome mosaicismQ33331400
Endemic cyanophages and the puzzle of phage-bacteria coevolutionQ33364611
A network perspective on the virus worldQ33583551
vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and BacteriaQ33642282
Family level phylogenies reveal modes of macroevolution in RNA virusesQ33776621
Molecular hyperdiversity and evolution in very large populationsQ33784387
Genomic insights that advance the species definition for prokaryotesQ33850939
Perspective: sex, recombination, and the efficacy of selection--was Weismann right?Q33913223
Bacteriophage resistance mechanismsQ34021879
Why do RNA viruses recombine?Q34197204
Phage-host interaction: an ecological perspectiveQ34351403
Recently agreed changes to the International Code of Virus Classification and NomenclatureQ34356154
Ecological speciation of bacteriophage lambda in allopatry and sympatryQ34545811
Consensus statement: Virus taxonomy in the age of metagenomicsQ34550236
Manipulating or superseding host recombination functions: a dilemma that shapes phage evolvability.Q35004540
Explaining microbial genomic diversity in light of evolutionary ecologyQ35109746
Defining viral species: making taxonomy useful.Q35211960
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversityQ35534216
The role of DNA recombination in herpes simplex virus DNA replication.Q35580375
Factors regulating template switch in vitro by viral RNA-dependent RNA polymerases: implications for RNA-RNA recombinationQ35859061
Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile ElementsQ36146880
Inferring Speciation Processes from Patterns of Natural Variation in Microbial GenomesQ36159735
Genomic differentiation among wild cyanophages despite widespread horizontal gene transferQ36194405
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic DivergenceQ36233821
RNA recombination in a coronavirus: recombination between viral genomic RNA and transfected RNA fragmentsQ36702356
Analysis of the phage sequence space: the benefit of structured informationQ36812463
Diversity among the tailed-bacteriophages that infect the EnterobacteriaceaeQ37190178
Microbial strain-level population structure and genetic diversity from metagenomesQ37735523
Biological species are universal across Life's domainsQ37738555
Structure, Replication, and Recombination of Retrovirus Genomes: Some Unifying HypothesesQ37875366
Microbial SpeciationQ38583870
Computational approaches to predict bacteriophage-host relationships.Q38666460
Genomic diversification of marine cyanophages into stable ecotypesQ39328259
Detection of novel recombinases in bacteriophage genomes unveils Rad52, Rad51 and Gp2.5 remote homologs.Q42060342
Population genomics of early events in the ecological differentiation of bacteria.Q42136525
Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophagesQ42628295
Recombination and microdiversity in coastal marine cyanophagesQ42631123
The adaptation of temperate bacteriophages to their host genomes.Q42744238
Meta-transcriptomics and the evolutionary biology of RNA virusesQ43167751
Reticulate representation of evolutionary and functional relationships between phage genomesQ43581270
Sequence analysis of porcine adenovirus serotype 5 fibre gene: evidence for recombinationQ43998631
Variability and recombination of clinical human cytomegalovirus strains from transplantation recipientsQ46583879
Comparative population genomics in animals uncovers the determinants of genetic diversity.Q46850041
Bacteriophage evolution differs by host, lifestyle and genome.Q47230329
The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification.Q49842971
A comparison of homologous recombination rates in bacteria and archaea.Q51677801
Estimating evolutionary rates in giant viruses using ancient genomes.Q54261032
P433issue23
P407language of work or nameEnglishQ1860
P304page(s)6040-6045
P577publication date2018-05-21
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleBiological species in the viral world
P478volume115

Reverse relations

cites work (P2860)
Q92304163Charting the diversity of uncultured viruses of Archaea and Bacteria
Q64110085Marine DNA Viral Macro- and Microdiversity from Pole to Pole
Q92960573Phage Therapy with a Focus on the Human Microbiota
Q92380954Phage-specific metabolic reprogramming of virocells
Q57485156Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
Q91806036Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
Q98720921The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut

Search more.