Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems

scientific article published in Scientific Reports

Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems is …
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scholarly articleQ13442814

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P356DOI10.1038/S41598-018-29521-4
P932PMC publication ID6060162
P698PubMed publication ID30046123

P50authorMadangchanok ImchenQ91965310
Alice Rebecca WattamQ114721896
Preetam GhoshQ61146527
Ranjith KumavathQ61146547
Vasco Ariston de Carvalho AzevedoQ79815999
Sandeep TiwariQ83575826
Debmalya BarhQ30001971
Aristóteles Góes-NetoQ39183772
P2093author name stringAline Vaz
P2860cites workAntibiotic resistance is prevalent in an isolated cave microbiomeQ21089884
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical PacificQ21092763
Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomesQ21284200
Fluoroquinolones resistance in multidrug-resistant tuberculosis in Pakistan and suitability of guidelines recommended standardized regimenQ88370489
Metals Accumulation in grey mangrove (Avicennia marina (Forsk.) Vierh.) inhabiting Tarut Bay, Eastern Saudi ArabiaQ64163797
The independent cue and cus systems confer copper tolerance during aerobic and anaerobic growth in Escherichia coliQ74001289
Structure and Absolute Configuration of Aspergilumamide A, a Novel Lumazine Peptide from the Mangrove-Derived FungusAspergillussp.Q78234969
The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samplesQ21562303
Plasmid-mediated quinolone resistance: a multifaceted threatQ24645356
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomesQ24817116
An Antibiotic-Resistance Enzyme from a Deep-Sea BacteriumQ27658560
Antibiotic resistance is ancientQ27672681
Bacterial Multidrug Efflux Pumps: Much More Than Antibiotic Resistance DeterminantsQ28073636
The global regulator Crc modulates metabolism, susceptibility to antibiotics and virulence in Pseudomonas aeruginosaQ28492769
Distinct Bacterial Communities in Surficial Seafloor Sediments Following the 2010 Deepwater Horizon BlowoutQ28595893
Phylogenetic and physiological diversity of microorganisms isolated from a deep greenland glacier ice coreQ28776369
Mangroves Enhance Reef Fish Abundance at the Caribbean Regional ScaleQ30398897
Resident microbiota of the gypsy moth midgut harbors antibiotic resistance determinantsQ30858300
Desulfuromonas carbonis sp. nov., an Fe(III)-, S0- and Mn(IV)-reducing bacterium isolated from an active coalbed methane gas wellQ30903502
Mangrove bacterial diversity and the impact of oil contamination revealed by pyrosequencing: bacterial proxies for oil pollutionQ31002561
Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sampleQ31048918
Susceptibilities to antiseptic agents and distribution of antiseptic-resistance genes qacA/B and smr of methicillin-resistant Staphylococcus aureus isolated in Asia during 1998 and 1999.Q31172546
Phylogenetic diversity of nitrogen-fixing bacteria in mangrove sediments assessed by PCR-denaturing gradient gel electrophoresisQ33324236
Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysisQ33479985
Evidence of increasing antibiotic resistance gene abundances in archived soils since 1940.Q33520054
Culture independent molecular analysis of bacterial communities in the mangrove sediment of Sundarban, IndiaQ33531939
Diversity and identification of methanogenic archaea and sulphate-reducing bacteria in sediments from a pristine tropical mangroveQ33535995
Isolation of a novel lipase from a metagenomic library derived from mangrove sediment from the south Brazilian coast.Q33555388
Advancing the understanding of biogeography-diversity relationships of benthic microorganisms in the North SeaQ33671279
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing dataQ33704542
Temporal changes in Sphingomonas and Mycobacterium populations in mangrove sediments contaminated with different concentrations of polycyclic aromatic hydrocarbons (PAHs)Q33711655
Bacterial phylogeny structures soil resistomes across habitatsQ33837847
Novel activity of acriflavine against colorectal cancer tumor cellsQ34017015
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated toolsQ34283164
A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE.Q34299351
The microbiome of Brazilian mangrove sediments as revealed by metagenomics.Q34318339
RNA-based assessment of diversity and composition of active archaeal communities in the German BightQ34496423
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.Q34510046
Properties and distribution of a metallo-β-lactamase (ALI-1) from the fish pathogen Aliivibrio salmonicida LFI1238.Q42691411
Molecular characterization of diazotrophic and denitrifying bacteria associated with mangrove rootsQ42909429
A novel salt-tolerant endo-beta-1,4-glucanase Cel5A in Vibrio sp. G21 isolated from mangrove soilQ43098882
Cloning and nucleotide sequences of carbazole degradation genes from marine bacterium Neptuniibacter sp. strain CAR-SF.Q43205989
Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440.Q44282474
Antibiotic resistance in bacteria isolated from the deep terrestrial subsurfaceQ46447719
NOVEL ANTIBIOTIC RESISTANCE DETERMINANTS FROM AGRICULTURAL SOIL EXPOSED TO ANTIBIOTICS WIDELY USED IN HUMAN MEDICINE AND ANIMAL FARMING.Q47207035
Systematic artifacts in metagenomes from complex microbial communities.Q51655718
Abundant rifampin resistance genes and significant correlations of antibiotic resistance genes and plasmids in various environments revealed by metagenomic analysis.Q53601945
Penibruguieramine A, a Novel Pyrrolizidine Alkaloid from the Endophytic Fungus Penicillium sp. GD6 Associated with Chinese Mangrove Bruguiera gymnorrhizaQ53606167
Prevalence of resistance to antiseptics and mupirocin among invasive coagulase-negative staphylococci from very preterm neonates in NICU: the creeping threat?Q54271774
Characterization of a copper-resistant symbiotic bacterium isolated from Medicago lupulina growing in mine tailings.Q54379325
Conjugative plasmids in bacteria of the 'pre-antibiotic' era.Q54498786
A World Without Mangroves?Q56620988
Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial CommunitiesQ57028908
Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida.Q34663919
Antibiotics as signals that trigger specific bacterial responsesQ34765316
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms.Q34780579
Microbial diversity in Brazilian mangrove sediments - a mini reviewQ34986379
Genomic potential of Marinobacter aquaeolei, a biogeochemical "opportunitroph"Q35077157
Cloning and characterization of a novel GH44 family endoglucanase from mangrove soil metagenomic libraryQ35149682
Isolation of Geobacter species from diverse sedimentary environments.Q35190255
Antibiotics as intermicrobial signaling agents instead of weaponsQ35194014
Spatiotemporal analysis of bacterial diversity in sediments of Sundarbans using parallel 16S rRNA gene tag sequencingQ35277580
Diversity and Distribution of Archaea in the Mangrove Sediment of SundarbansQ35766085
Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.Q35811312
Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soilsQ35816844
Pullularins E and F, two new peptides from the endophytic fungus Bionectria ochroleuca isolated from the mangrove plant Sonneratia caseolarisQ36096755
Copper and cobalt accumulation in plants: a critical assessment of the current state of knowledgeQ36131982
Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests.Q36337461
Antibiotics as signalling moleculesQ36732540
Impact of manure fertilization on the abundance of antibiotic-resistant bacteria and frequency of detection of antibiotic resistance genes in soil and on vegetables at harvestQ37123686
Functional role of bacterial multidrug efflux pumps in microbial natural ecosystemsQ37389801
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).Q37661996
Biotechnological domestication of pseudomonads using synthetic biology.Q38204897
Emergence of a new mutation and its accumulation in the topoisomerase IV gene confers high levels of resistance to fluoroquinolones in Escherichia coli isolatesQ38492237
Biodegradation of polycyclic aromatic hydrocarbons: Using microbial bioelectrochemical systems to overcome an impasse.Q38608227
Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems.Q38617928
Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics.Q38662406
Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements.Q38688098
Activation of cGAS-dependent antiviral responses by DNA intercalating agentsQ38742855
Characterization of a novel metallo-β-lactamases fold hydrolase from Pelagibacterium halotolerans, a marine halotolerant bacterium isolated from East China Sea.Q40330733
Metagenomic analysis revealed highly diverse microbial arsenic metabolism genes in paddy soils with low-arsenic contentsQ40342064
Metagenomic profiles of antibiotic resistance genes in paddy soils from South China.Q40350740
Natural antibiotic resistance and contamination by antibiotic resistance determinants: the two ages in the evolution of resistance to antimicrobialsQ40385075
Penicillin-binding protein 2 is essential for expression of high-level vancomycin resistance and cell wall synthesis in vancomycin-resistant Staphylococcus aureus carrying the enterococcal vanA gene complexQ40424382
Comparison of ß-lactam plus aminoglycoside versus ß-lactam plus fluoroquinolone empirical therapy in serious nosocomial infections due to Gram-negative bacilliQ40626072
Heavy metal resistance and virulence profile in Pseudomonas aeruginosa isolated from Brazilian soils.Q40667197
Functional environmental proteomics: elucidating the role of a c-type cytochrome abundant during uranium bioremediationQ40770797
Acriflavine Inhibits Acquired Drug Resistance by Blocking the Epithelial-to-Mesenchymal Transition and the Unfolded Protein ResponseQ40885419
Effects of subinhibitory concentrations of antibiotics on SOS and DNA repair gene expression in Staphylococcus aureusQ41773256
Metagenomic analysis of apple orchard soil reveals antibiotic resistance genes encoding predicted bifunctional proteinsQ41967842
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectmangroveQ19756
P304page(s)11187
P577publication date2018-07-25
P1433published inScientific ReportsQ2261792
P1476titleComparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems
P478volume8

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cites work (P2860)
Q64074486Comparative metagenomics study reveals pollution induced changes of microbial genes in mangrove sediments
Q96126879Effects of an external magnetic field on microbial functional genes and metabolism of activated sludge based on metagenomic sequencing
Q91965313Insights into Antagonistic Interactions of Multidrug Resistant Bacteria in Mangrove Sediments from the South Indian State of Kerala
Q90470798Spatial and temporal heterogeneity in the structure and function of sediment bacterial communities of a tropical mangrove forest

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