High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia

scientific article published in 2018

High-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.7717/PEERJ.5661
P932PMC publication ID6161700
P698PubMed publication ID30280033

P50authorHanna TuomistoQ21395673
Alexandre AntonelliQ26714471
Alexander ZizkaQ53821462
Christopher J. BarnesQ56441423
Camila D RitterQ56846901
Rolf Henrik NilssonQ30513184
P2093author name stringFabian Roger
P2860cites workDefining operational taxonomic units using DNA barcode dataQ24673720
Nematode spatial and ecological patterns from tropical and temperate rainforestsQ27319871
Assessment of bacterial bph gene in Amazonian dark earth and their adjacent soilsQ28539695
The fungiQ28750021
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2Q29547403
The SILVA ribosomal RNA gene database project: improved data processing and web-based toolsQ29547623
UPARSE: highly accurate OTU sequences from microbial amplicon readsQ29616627
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scaleQ29617333
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforestsQ56548981
Structure and function of the global topsoil microbiomeQ56967063
Environmental factors influencing the distribution of rRNA from Verrucomicrobia in soilQ73614552
Waste not, want not: why rarefying microbiome data is inadmissibleQ30793257
Ecological linkages between aboveground and belowground biotaQ31077928
Litter decay controlled by temperature, not soil properties, affecting future soil carbon.Q31131035
Analyzing or explaining beta diversity? Understanding the targets of different methods of analysisQ33266559
Influence of soil characteristics on the diversity of bacteria in the Southern Brazilian Atlantic Forest.Q33585036
Negative plant-soil feedback predicts tree-species relative abundance in a tropical forestQ33617446
The influence of sampling strategies and spatial variation on the detected soil bacterial communities under three different land-use typesQ33864121
Soil characteristics more strongly influence soil bacterial communities than land-use typeQ34069824
Towards next-generation biodiversity assessment using DNA metabarcodingQ34225620
Global biogeography of highly diverse protistan communities in soilQ34509787
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.Q34510046
Arthropod diversity in a tropical forestQ34512152
The microbial engines that drive Earth's biogeochemical cycles.Q34780678
Soil biodiversity and soil community composition determine ecosystem multifunctionalityQ35123356
Belowground biodiversity and ecosystem functioningQ35453672
Fungal biogeography. Global diversity and geography of soil fungiQ35457192
Geological control of floristic composition in Amazonian forestsQ35659492
Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass--Sequence Relationships with an Innovative Metabarcoding Protocol.Q35685870
Tree diversity and species identity effects on soil fungi, protists and animals are context dependentQ35690692
Unexpectedly High Beta-Diversity of Root-Associated Fungal Communities in the Bolivian AndesQ36133567
Novel soil-inhabiting clades fill gaps in the fungal tree of lifeQ36340376
The contribution of edaphic heterogeneity to the evolution and diversity of Burseraceae trees in the western AmazonQ39004815
Dispersal, environment, and floristic variation of western Amazonian forests.Q39537955
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.Q42160739
Acidobacterial community responses to agricultural management of soybean in Amazon forest soils.Q43692971
Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples.Q46788141
A global atlas of the dominant bacteria found in soilQ48216577
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesggplot2Q326489
DESeq2Q113018293
P407language of work or nameEnglishQ1860
P921main subjectbiodiversityQ47041
soil biodiversityQ7554896
metabarcodingQ51237016
P304page(s)e5661
P577publication date2018-01-01
P1433published inPeerJQ2000010
P1476titleHigh-throughput metabarcoding reveals the effect of physicochemical soil properties on soil and litter biodiversity and community turnover across Amazonia
P478volume6

Reverse relations

cites work (P2860)
Q98225886Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity
Q90412845Assessing insect biodiversity with automatic light traps in Brazil: Pearls and pitfalls of metabarcoding samples in preservative ethanol
Q58613444Soil fertility and flood regime are correlated with phylogenetic structure of Amazonian palm communities
Q92024671The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia

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