Integrated Structural Biology for α-Helical Membrane Protein Structure Determination

scholarly article by Yan Xia published in April 2018

Integrated Structural Biology for α-Helical Membrane Protein Structure Determination is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.STR.2018.02.006
P932PMC publication ID5884713
P698PubMed publication ID29526436

P50authorJens MeilerQ29315318
P2093author name stringYan Xia
Brian Weiner
Pedro Teixeira
Axel W Fischer
P2860cites workProtein 3D structure computed from evolutionary sequence variationQ21090966
Structure of a class C GPCR metabotropic glutamate receptor 1 bound to an allosteric modulatorQ24338769
A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressionsQ24610334
SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural networkQ24615699
Distinct roles of metabotropic glutamate receptor dimerization in agonist activation and G-protein couplingQ24624255
Direct-coupling analysis of residue coevolution captures native contacts across many protein familiesQ24627074
Progress towards mapping the universe of protein foldsQ24801216
Computational modeling of membrane proteinsQ26995693
BCL::Fold--de novo prediction of complex and large protein topologies by assembly of secondary structure elementsQ27336738
Studies on the structure of the G-protein-coupled receptor rhodopsin including the putative G-protein binding site in unactivated and activated formsQ27634993
X-ray structure of EmrE supports dual topology modelQ27649102
Visualization of arrestin recruitment by a G-protein-coupled receptorQ28244290
Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational samplingQ28748259
ROSETTA3: an object-oriented software suite for the simulation and design of macromoleculesQ28914720
Scientific benchmarks for guiding macromolecular energy function improvementQ28914728
Protein structure determination by combining sparse NMR data with evolutionary couplingsQ28914765
The Protein Data BankQ29616068
Protein structure prediction using RosettaQ29616386
Solution NMR studies of integral polytopic α-helical membrane proteins: the structure determination of the seven-helix transmembrane receptor sensory rhodopsin II, pSRII.Q30155230
A unified hydrophobicity scale for multispan membrane proteinsQ30157444
De novo protein structure determination using sparse NMR data.Q30327862
Cyclic coordinate descent: A robotics algorithm for protein loop closure.Q30332780
The progress of membrane protein structure determinationQ30342003
Multipass membrane protein structure prediction using RosettaQ30352314
Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.Q30353377
BCL::Fold--protein topology determination from limited NMR restraints.Q30354487
Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative.Q30359423
De novo high-resolution protein structure determination from sparse spin-labeling EPR data.Q30367770
BCL::MP-fold: Membrane protein structure prediction guided by EPR restraintsQ30373207
Prediction of membrane protein structures with complex topologies using limited constraintsQ30374712
Protein structure prediction guided by crosslinking restraints--A systematic evaluation of the impact of the crosslinking spacer lengthQ30374800
Large-scale determination of previously unsolved protein structures using evolutionary informationQ30378725
EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps.Q30378954
RosettaEPR: an integrated tool for protein structure determination from sparse EPR dataQ30395519
Protein structure determination using metagenome sequence dataQ30397719
Overcoming barriers to membrane protein structure determinationQ30401692
Protein structure determination from pseudocontact shifts using ROSETTA.Q30412293
EM-fold: de novo atomic-detail protein structure determination from medium-resolution density mapsQ30414109
Coordinating the impact of structural genomics on the human α-helical transmembrane proteomeQ30419401
BCL::MP-fold: folding membrane proteins through assembly of transmembrane helicesQ30431351
A pedestrian guide to membrane protein crystallizationQ30434293
Structural genomics plucks high-hanging membrane proteinsQ34276839
Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.Q34496933
Structure of bovine rhodopsin in a trigonal crystal form.Q34551940
SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology.Q34863527
Membrane protein structural biology: the high throughput challengeQ35116332
Structural Insights into the Dynamic Process of β2-Adrenergic Receptor SignalingQ35638953
A limited universe of membrane protein families and foldsQ36458488
Solution NMR of membrane proteins: practice and challengesQ36529904
Protonation-dependent conformational dynamics of the multidrug transporter EmrE.Q36563374
MPtopo: A database of membrane protein topologyQ36640283
The dynamic process of β(2)-adrenergic receptor activationQ36651876
High-resolution distance mapping in rhodopsin reveals the pattern of helix movement due to activationQ36677146
Lipidic cubic phases: a novel concept for the crystallization of membrane proteinsQ37043913
The GPCR Network: a large-scale collaboration to determine human GPCR structure and functionQ37045212
The role of ligands on the equilibria between functional states of a G protein-coupled receptorQ37149545
Refinement of protein structures into low-resolution density maps using rosettaQ37507897
Energetic analysis of the rhodopsin-G-protein complex links the α5 helix to GDP releaseQ37626332
The role of protein dynamics in GPCR function: insights from the β2AR and rhodopsinQ38188734
A normalized root-mean-square distance for comparing protein three-dimensional structuresQ38272565
Electron crystallography reveals the structure of metarhodopsin I.Q40018770
Unwinding of the C-Terminal Residues of Neuropeptide Y is critical for Y₂ Receptor Binding and ActivationQ40964685
Major ligand-induced rearrangement of the heptahelical domain interface in a GPCR dimer.Q41694901
SIGNAL TRANSDUCTION. Structural basis for nucleotide exchange in heterotrimeric G proteinsQ42390741
Improved chemical shift based fragment selection for CS-Rosetta using Rosetta3 fragment pickerQ45019743
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectmolecular biologyQ7202
protein structureQ735188
structural biologyQ908902
protein structure determinationQ110580655
P304page(s)657-666.e2
P577publication date2018-04-03
P1433published inStructureQ15709970
P1476titleIntegrated Structural Biology for α-Helical Membrane Protein Structure Determination
P478volume26

Search more.