Comparison of iTRAQ and SWATH in a clinical study with multiple time points

scholarly article by Antti Jylhä published in January 2018

Comparison of iTRAQ and SWATH in a clinical study with multiple time points is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1186/S12014-018-9201-5
P932PMC publication ID6065059
P698PubMed publication ID30069167

P50authorJanika NättinenQ61110015
Roger W BeuermanQ96058421
Matti NykterQ38802715
Hannu UusitaloQ42539934
P2093author name stringLei Zhou
Alexandra Mikhailova
Ulla Aapola
Antti Jylhä
P2860cites workQuantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.Q54024007
Preventing intense false positive and negative reactions attributed to the principle of ELISA to re-investigate antibody studies in autoimmune diseases.Q54292067
Proteomic profiling of inflammatory signaling molecules in the tears of patients on chronic glaucoma medication.Q54363467
Association of tear proteins with Meibomian gland disease and dry eye symptomsQ56775803
Identification of Tear Fluid Biomarkers in Dry Eye Syndrome Using iTRAQ Quantitative ProteomicsQ56775850
Protein biomarker discovery and validation: the long and uncertain path to clinical utilityQ36561644
Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomicsQ36647475
Potential tumor biomarkers identified in ovarian cyst fluid by quantitative proteomic analysis, iTRAQ.Q36797835
Isotope dilution strategies for absolute quantitative proteomicsQ37430586
An insight into iTRAQ: where do we stand now?Q37997372
Tear analysis in ocular surface diseasesQ38021534
Label-free quantitative proteomics trends for protein-protein interactionsQ38059973
SWATH™- and iTRAQ-based quantitative proteomic analyses reveal an overexpression and biological relevance of CD109 in advanced NSCLC.Q39011983
Comparison of label-free and label-based strategies for proteome analysis of hepatoma cell lines.Q39108916
Analysis of the effects of preservative-free tafluprost on the tear proteomeQ41668980
Addressing accuracy and precision issues in iTRAQ quantitationQ42427843
Secreted proteome profiling in human RPE cell cultures derived from donors with age related macular degeneration and age matched healthy donors.Q42502356
Topical fluorometholone treatment and desiccating stress change inflammatory protein expression in tears.Q47791389
Dual inhibition of sister chromatid separation at metaphaseQ48873086
8-plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's diseaseQ24606651
iTRAQ quantitative proteomics in the analysis of tears in dry eye patientsQ24624997
Tear fluid biomarkers in ocular and systemic disease: potential use for predictive, preventive and personalised medicineQ26740411
Quantitative analysis of proteins in the tear fluid of patients with diabetic retinopathyQ28258780
Evaluation of iTRAQ and SWATH-MS for the Quantification of Proteins Associated with Insulin Resistance in Human Duodenal Biopsy SamplesQ28547099
Comparative Analysis of Label-Free and 8-Plex iTRAQ Approach for Quantitative Tissue Proteomic AnalysisQ28547700
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagentsQ29547450
Whole cell, label free protein quantitation with data independent acquisition: quantitation at the MS2 level.Q30864370
Novel pathophysiological markers are revealed by iTRAQ-based quantitative clinical proteomics approach in vascular dementiaQ33624463
Bayesian Analysis of iTRAQ Data with Nonrandom Missingness: Identification of Differentially Expressed ProteinsQ34021823
Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysisQ34133645
Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directionsQ34279143
Western blot: technique, theory, and trouble shootingQ34304981
Label-free Quantification of Proteins in Single Embryonic Cells with Neural Fate in the Cleavage-Stage Frog (Xenopus laevis) Embryo using Capillary Electrophoresis Electrospray Ionization High-Resolution Mass Spectrometry (CE-ESI-HRMS).Q34531262
iTRAQ underestimation in simple and complex mixtures: "the good, the bad and the ugly".Q35002931
A repository of assays to quantify 10,000 human proteins by SWATH-MS.Q35066504
Quantitative N-linked glycoproteomics of myocardial ischemia and reperfusion injury reveals early remodeling in the extracellular environmentQ35144131
iTRAQ-based analysis of progerin expression reveals mitochondrial dysfunction, reactive oxygen species accumulation and altered proteostasis.Q35661127
The thickness of the tear filmQ35980014
Comparative proteomics reveals human pluripotent stem cell-derived limbal epithelial stem cells are similar to native ocular surface epithelial cells.Q36109752
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectmolecular biologyQ7202
molecular medicineQ3523816
P304page(s)24
P577publication date2018-01-01
P1433published inClinical ProteomicsQ5133793
P1476titleComparison of iTRAQ and SWATH in a clinical study with multiple time points
P478volume15

Reverse relations

cites work (P2860)
Q64099727Age-associated changes in human tear proteome
Q97885047Comparison of Capillary and Schirmer Strip Tear Fluid Sampling Methods Using SWATH-MS Proteomics Approach
Q94600354Platform independent protein-based cell-of-origin subtyping of diffuse large B-cell lymphoma in formalin-fixed paraffin-embedded tissue
Q94521330SWATH-MS analysis of cerebrospinal fluid to generate a robust battery of biomarkers for Alzheimer's disease
Q92542822Unraveling the Molecular Signature of Extracellular Vesicles From Endometrial-Derived Mesenchymal Stem Cells: Potential Modulatory Effects and Therapeutic Applications

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