Insights into imprinting from parent-of-origin phased methylomes and transcriptomes

Insights into imprinting from parent-of-origin phased methylomes and transcriptomes is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1038/S41588-018-0232-7
P2888exact matchhttps://scigraph.springernature.com/pub.10.1038/s41588-018-0232-7
P698PubMed publication ID30349119

P50authorKári StefánssonQ6453246
Unnur ÞorsteinsdóttirQ28050158
Daníel F. GuðbjartssonQ30348313
Thorunn RafnarQ30430661
Páll MelstedQ56420205
P2093author name stringAsgeir Sigurdsson
Gisli Masson
Julius Gudmundsson
Gudmundur Ingi Eyjolfsson
Hilma Holm
Isleifur Olafsson
Florian Zink
Anna Helgadottir
Olof Sigurdardottir
Ingileif Jonsdottir
Bjarni V. Halldorsson
Droplaug N. Magnusdottir
Simon N. Stacey
Gisli H. Halldorsson
Helga Ingimundardottir
Snædis Kristmundsdottir
Olafur T. Magnusson
Sigurjon A. Gudjonsson
Kristjan F. Alexandersson
Nicolas J. Walker
Tiffany J. Morris
P2860cites workAn integrated encyclopedia of DNA elements in the human genomeQ22122150
The specification of imprints in mammalsQ26861311
Imprinting disorders: a group of congenital disorders with overlapping patterns of molecular changes affecting imprinted lociQ26995324
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicingQ28249503
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolutionQ28265420
Genome-wide DNA methylation analysis of patients with imprinting disorders identifies differentially methylated regions associated with novel candidate imprinted genesQ28660776
STAR: ultrafast universal RNA-seq alignerQ29615052
Genomic imprinting: parental influence on the genomeQ29616227
Variable maternal methylation overlapping the nc886/vtRNA2-1 locus is locked between hypermethylated repeats and is frequently altered in cancer.Q33779206
Programming and inheritance of parental DNA methylomes in mammalsQ33894408
Regulation of alternative polyadenylation by genomic imprintingQ34011433
DNA methylation dynamics of the human preimplantation embryoQ34262644
Completion of mouse embryogenesis requires both the maternal and paternal genomesQ34267351
Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarcheQ34289136
CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization.Q34314401
Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishmentQ34396556
Large-scale whole-genome sequencing of the Icelandic populationQ34468572
Genome-wide analysis of DNA methylation dynamics during early human developmentQ34679930
Detection of sharing by descent, long-range phasing and haplotype imputationQ34928818
Locally disordered methylation forms the basis of intratumor methylome variation in chronic lymphocytic leukemiaQ34997508
New basal cell carcinoma susceptibility lociQ35487317
Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouseQ35554738
Allelic methylation levels of the noncoding VTRNA2-1 located on chromosome 5q31.1 predict outcome in AMLQ35651714
Independent genomewide screens identify the tumor suppressor VTRNA2-1 as a human epiallele responsive to periconceptional environmentQ35730128
The landscape of genomic imprinting across diverse adult human tissuesQ35793503
Matrix eQTL: ultra fast eQTL analysis via large matrix operationsQ35947630
Human Oocyte-Derived Methylation Differences Persist in the Placenta Revealing Widespread Transient Imprinting.Q36189789
Detecting DNA cytosine methylation using nanopore sequencing.Q36285424
Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locusQ36305629
Genome-wide DNA methylation analysis of pseudohypoparathyroidism patients with GNAS imprinting defects.Q36507925
Parental origin of sequence variants associated with complex diseasesQ37102209
Protection against de novo methylation is instrumental in maintaining parent-of-origin methylation inherited from the gametesQ37187333
DNA Methylation Profiling of Uniparental Disomy Subjects Provides a Map of Parental Epigenetic Bias in the Human GenomeQ37231371
The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex DiseaseQ37634534
DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos.Q37729754
Imprinting on chromosome 20: Tissue‐specific imprinting and imprinting mutations in theGNASlocusQ37783982
Clinical review: Pseudohypoparathyroidism: diagnosis and treatment.Q37911739
New concepts in DNA methylationQ38221707
The alternative role of DNA methylation in splicing regulationQ38402670
fdrtool: a versatile R package for estimating local and tail area-based false discovery ratesQ38426781
The imprinted gene and parent-of-origin effect databaseQ38661383
Establishment and functions of DNA methylation in the germline.Q38962145
Whole genome characterization of sequence diversity of 15,220 IcelandersQ41690515
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.Q41836564
Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissuesQ44499130
Polymorphic imprinting of the serotonin-2A (5-HT2A) receptor gene in human adult brainQ48400038
Maternal H3K27me3 controls DNA methylation-independent imprinting.Q48516898
The DNA methylation landscape of human early embryos.Q50644706
Genomic imprinting: the emergence of an epigenetic paradigm.Q51860651
Functional Polymorphism in the Parental Imprinting of the Human IGF2R GeneQ57500167
Polymorphic functional imprinting of the human IGF2 gene among individuals, in blood cells, is associated with H19 expressionQ71016573
Generalized Linear ModelsQ105583240
P433issue11
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
P304page(s)1542-1552
P577publication date2018-10-22
P1433published inNature GeneticsQ976454
P1476titleInsights into imprinting from parent-of-origin phased methylomes and transcriptomes
P478volume50

Reverse relations

cites work (P2860)
Q97559181Alteration of methylation status in archival DNA samples: A qualitative assessment by methylation specific polymerase chain reaction
Q93063992Assisted reproductive technologies are associated with limited epigenetic variation at birth that largely resolves by adulthood
Q100433819Clinically and biologically relevant subgroups of Wilms tumour defined by genomic and epigenomic analyses
Q64990350Epigenetic therapy of Prader-Willi syndrome.
Q90595517Genome-wide allele-specific methylation is enriched at gene regulatory regions in a multi-generation pedigree from the Norfolk Island isolate
Q91063421Genomic imprinting disorders: lessons on how genome, epigenome and environment interact
Q91619136Loss of p57KIP2 expression confers resistance to contact inhibition in human androgenetic trophoblast stem cells
Q99415614Loss-of-function maternal-effect mutations of PADI6 are associated with familial and sporadic Beckwith-Wiedemann syndrome with multi-locus imprinting disturbance
Q60309440Mother-child transmission of epigenetic information by tunable polymorphic imprinting
Q64066289Novel parent-of-origin-specific differentially methylated loci on chromosome 16
Q64904210RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting.
Q90179394The Role of microRNAs, Long Non-coding RNAs, and Circular RNAs in Cervical Cancer
Q93192447Twin Registries Moving Forward and Meeting the Future: A Review

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