Reply to "Challenges in modeling the human gut microbiome"

scientific article published on 01 August 2018

Reply to "Challenges in modeling the human gut microbiome" is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1038/NBT.4212
P698PubMed publication ID30080835

P50authorInes ThieleQ43370924
Almut HeinkenQ63208481
Ronan Mt FlemingQ64019228
P2093author name stringStefanía Magnúsdóttir
P2860cites workA protocol for generating a high-quality genome-scale metabolic reconstructionQ24603373
BiGG Models: A platform for integrating, standardizing and sharing genome-scale modelsQ24698676
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networksQ28145745
Comparison of network-based pathway analysis methodsQ28274818
What is flux balance analysis?Q28275348
Applications of genome-scale metabolic reconstructionsQ29031028
Integration of expression data in genome-scale metabolic network reconstructionsQ30425389
Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale modelsQ33642720
Computationally efficient flux variability analysisQ33709846
The acetate switchQ33755202
fastGapFill: efficient gap filling in metabolic networksQ34103101
Energy balance for analysis of complex metabolic networksQ34178210
von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic modelsQ34433935
Elimination of thermodynamically infeasible loops in steady-state metabolic modelsQ34536141
Consistent estimation of Gibbs energy using component contributionsQ34844917
Systems approach to refining genome annotationQ35768707
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota.Q36205362
Collaborative regulation of CO2 transport and fixation during succinate production in Escherichia coliQ36340370
Critical assessment of genome-scale metabolic networks: the need for a unified standard.Q38415568
Very slow growth of Escherichia coliQ39973521
Optimization based automated curation of metabolic reconstructionsQ42431633
Conditions for duality between fluxes and concentrations in biochemical networksQ46527021
Optimizing genome-scale network reconstructionsQ46774634
CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributionsQ47674753
A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks.Q51523815
Challenges in modeling the human gut microbiomeQ59830697
P433issue8
P921main subjectbiotechnologyQ7108
biomedical engineeringQ327092
bioengineeringQ580689
microbiomeQ1330402
molecular medicineQ3523816
P304page(s)686-691
P577publication date2018-08-01
P1433published inNature BiotechnologyQ1893837
P1476titleReply to "Challenges in modeling the human gut microbiome"
P478volume36

Reverse relations

cites work (P2860)
Q66679640Current status and applications of genome-scale metabolic models
Q96765470Large-scale metabolic interaction network of the mouse and human gut microbiota
Q92822562MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota
Q64054753Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

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