Conjugation of DNA with Biomolecules and Nanoparticles

Conjugation of DNA with Biomolecules and Nanoparticles is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1002/9781118696880.CH4

P50authorPhilippe BarthélémyQ51020958
Oliver SeitzQ48624519
P2093author name stringAlfonso Latorre
Anika Kern
Peter Strazewski
Álvaro Somoza
Arnaud Gissot
Amit Patwa
Khalid Oumzil
P2860cites workStudies on Some Interactions and Reactions of Oligonucleotides in Aqueous Solution*Q53810384
Long-lived luminogenic probe for detection of RNA in a crude solution of living bacterial cells.Q54304425
Nucleic acid templated reactions: consequences of probe reactivity and readout strategy for amplified signaling and sequence selectivity.Q54479295
Click chemistry for rapid labeling and ligation of RNA.Q54628496
Synthetic methods for the implementation of encoded combinatorial chemistryQ56873594
Single-Step Rapid Assembly of DNA Origami Nanostructures for Addressable Nanoscale BioreactorsQ57156854
Fluorescence Detection of Intron Lariat RNA with Reduction-Triggered Fluorescent ProbesQ57228548
Base-Directed Formation of Fluorescent Silver ClustersQ57498973
Towards nucleopeptides containing any trifunctional amino acid (II)Q57975630
Bioorthogonal reactions challenged: DNA templated native chemical ligation during PCRQ58001563
Chemical control of biomolecular interaction modulesQ58001636
DNA-Catalyzed Transfer of a Reporter GroupQ58001676
As Fast and Selective as Enzymatic Ligations: Unpaired Nucleobases Increase the Selectivity of DNA-Controlled Native Chemical PNA LigationQ58001678
DNA Block Copolymer Micelles – A Combinatorial Tool for Cancer NanotechnologyQ58034232
A Straightforward Synthesis of 5‘-Peptide Oligonucleotide Conjugates UsingNα-Fmoc-Protected Amino AcidsQ58035612
Fluorescent DNA Stabilized Silver Nanoclusters as BiosensorsQ59010014
DNA-templated assembly and electrode attachment of a conducting silver wireQ59081986
Photoreductive synthesis of water-soluble fluorescent metal nanoclustersQ59312980
N-acetylcysteine induced quenching of red fluorescent oligonucleotide-stabilized silver nanoclusters and the application in pharmaceutical detection.Q50487252
DNA-templated silver nanoclusters for fluorescence turn-on assay of acetylcholinesterase activity.Q50487618
Design aspects of bright red emissive silver nanoclusters/DNA probes for microRNA detection.Q50504279
Growth mechanisms of fluorescent silver clusters regulated by polymorphic DNA templates: a DFT study.Q50504420
Rapid detection of microRNA by a silver nanocluster DNA probe.Q50527598
Oligonucleotide-stabilized fluorescent silver nanoclusters for sensitive detection of biothiols in biological fluids.Q50553257
A DNA--silver nanocluster probe that fluoresces upon hybridization.Q50566457
Self-assembly of a hexagonal phase of wormlike micelles containing metal nanoclusters.Q51533903
Mechanisms and optimization of in vivo delivery of lipophilic siRNAs.Q51794680
Promoting strand exchange in a DNA-templated transfer reaction.Q52885798
Consecutive signal amplification for DNA detection based on de novo fluorophore synthesis and host-guest chemistry.Q52889054
Lipid domain specific recruitment of lipophilic nucleic acids: a key for switchable functionalization of membranes.Q52900869
Single nucleotide specific detection of DNA by native chemical ligation of fluorescence labeled PNA-probes.Q52926116
Reducing product inhibition in DNA-template-controlled ligation reactions.Q52931752
A label-free DNA-templated silver nanocluster probe for fluorescence on-off detection of endonuclease activity and inhibition.Q53091673
Programmable one-pot multistep organic synthesis using DNA junctions.Q53389936
Peptidomimetic bond formation by DNA-templated acyl transfer.Q53440830
The role of spacers on the self-assembly of DNA aptamer-amphiphiles into micelles and nanotapes.Q53673702
DNA display I. Sequence-encoded routing of DNA populationsQ21146417
Inhibition of microRNA function by antimiR oligonucleotidesQ21198757
DNA display II. Genetic manipulation of combinatorial chemistry libraries for small-molecule evolutionQ21563643
Folding DNA to create nanoscale shapes and patternsQ22122462
Encoded combinatorial chemistryQ24561374
Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walkerQ24614446
Cu-free click cycloaddition reactions in chemical biologyQ24628057
Efficient nucleic acid detection by templated reductive quencher releaseQ24642769
The generality of DNA-templated synthesis as a basis for evolving non-natural small moleculesQ24648761
DNA-templated polymerization of side-chain-functionalized peptide nucleic acid aldehydesQ24649579
DNA-templated organic synthesis and selection of a library of macrocyclesQ24655457
DNA display III. Solid-phase organic synthesis on unprotected DNAQ24795199
Translating DNA into synthetic moleculesQ24803057
Oligonucleotide-templated reactions for sensing nucleic acidsQ27021992
The physics of simple metal clusters: experimental aspects and simple modelsQ27347437
Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognitionQ27737536
Silencing of microRNAs in vivo with 'antagomirs'Q27860891
A stepwise huisgen cycloaddition process: copper(I)-catalyzed regioselective "ligation" of azides and terminal alkynesQ28219495
Cholesteryl-conjugated oligonucleotides: synthesis, properties, and activity as inhibitors of replication of human immunodeficiency virus in cell cultureQ28359555
Inhibition of Rous sarcoma virus replication and cell transformation by a specific oligodeoxynucleotideQ30048476
Encoded self-assembling chemical librariesQ30760719
Translation of DNA into synthetic N-acyloxazolidinesQ30760741
DNA-templated functional group transformations enable sequence-programmed synthesis using small-molecule reagentsQ30778190
Total stepwise solid-phase synthesis of oligonucleotide-(3'-->N)-peptide conjugates.Q30847765
Novel binding and efficient cellular uptake of guanidine-based peptide nucleic acids (GPNA).Q30941711
Interaction-dependent PCR: identification of ligand-target pairs from libraries of ligands and libraries of targets in a single solution-phase experiment.Q30990453
Highly Sensitive in Vitro Selections for DNA-Linked Synthetic Small Molecules with Protein Binding Affinity and SpecificityQ31008095
Single-nucleotide-specific PNA-peptide ligation on synthetic and PCR DNA templatesQ33205708
A portable albumin binder from a DNA-encoded chemical libraryQ33325558
Unnatural selection in chemical systemsQ33336390
Bridging one helical turn in double-stranded DNA by templated dimerization of molecular rodsQ33346066
Micelles of lipid-oligonucleotide conjugates: implications for membrane anchoring and base pairing.Q33379200
DNA-mediated silver nanoclusters: synthesis, properties and applications.Q38003098
Reactions templated by nucleic acids: more ways to translate oligonucleotide-based instructions into emerging function.Q38116476
Fluorescent silver nanoclusters as DNA probesQ38119395
Amplification by nucleic acid-templated reactionsQ38199630
Lipid-anchored oligonucleotides for stable double-helix formation in distinct membrane domainsQ38312161
Effective detection and cell imaging of prion protein with new prepared targetable yellow-emission silver nanoclustersQ38319440
Label-free and fluorescence turn-on aptasensor for protein detection via target-induced silver nanoclusters formation.Q38321100
Reversible covalent attachment of cholesterol to oligodeoxyribonucleotides for studies of the mechanisms of their penetration into eucaryotic cells.Q38322598
The interactions of amphiphilic antisense oligonucleotides with serum proteins and their effects on in vitro silencing activityQ38324811
Cellular uptakes, biostabilities and anti-miR-210 activities of chiral arginine-PNAs in leukaemic K562 cellsQ38324942
Chemical ligation of DNA: the first non-enzymatic assembly of a biologically active geneQ38333920
Silver nanocluster aptamers: in situ generation of intrinsically fluorescent recognition ligands for protein detectionQ38338723
Synthesis of alkylating oligonucleotide derivatives containing cholesterol or phenazinium residues at their 3'-terminus and their interaction with DNA within mammalian cellsQ38343786
Quenched auto-ligating DNAs: multicolor identification of nucleic acids at single nucleotide resolutionQ38345457
Molecular assembly of an aptamer-drug conjugate for targeted drug delivery to tumor cellsQ38356248
Biochemical and biological effects of nonionic nucleic acid methylphosphonatesQ38356378
Inhibitory effect of complex formation with oligodeoxyribonucleotide ethyl phosphotriesters on transfer ribonucleic acid aminoacylationQ38360895
Synthesis of oligodeoxyribonucleotide ethyl phosphotriesters and their specific complex formation with transfer ribonucleic acidQ38360900
Antisense pro-drugs: 5'-ester oligodeoxynucleotidesQ38572359
Multiplexed detection of microRNAs by tuning DNA-scaffolded silver nanoclustersQ39132536
One-step DNA-programmed growth of CpG conjugated silver nanoclusters: a potential platform for simultaneous enhanced immune response and cell imaging.Q39134848
Mechanistic insights into LDL nanoparticle-mediated siRNA deliveryQ39433003
One-step engineering of silver nanoclusters-aptamer assemblies as luminescent labels to target tumor cellsQ39443753
Synthesis, characterization, and in vivo delivery of siRNA-squalene nanoparticles targeting fusion oncogene in papillary thyroid carcinomaQ39544738
DNA-based micelles: synthesis, micellar properties and size-dependent cell permeabilityQ39738354
Phospholipid membranes decorated by cholesterol-based oligonucleotides as soft hybrid nanostructuresQ39856575
Lipid-conjugated oligonucleotides via "click chemistry" efficiently inhibit hepatitis C virus translation.Q39964425
Efficient in vivo delivery of siRNA to the liver by conjugation of alpha-tocopherolQ39999051
Optimization and modifications of aptamers selected from live cancer cell lines.Q40156691
Effective incorporation of 2'-O-methyl-oligoribonucleotides into liposomes and enhanced cell association through modification with thiocholesterolQ40411803
Modulation of oligonucleotide duplex and triplex stability via hydrophobic interactionsQ40412118
Synthesis and physical properties ofanti-HIV antisense oligonucleotides bearing terminal lipophilic groupsQ40423002
Synthesis, hybridization properties and antiviral activity of lipid-oligodeoxynucleotide conjugatesQ40517947
3'-End conjugates of minimally phosphorothioate-protected oligonucleotides with 1-O-hexadecylglycerol: synthesis and anti-ras activity in radiation-resistant cellsQ40892887
Synthesis, Hybridization Properties, Nuclease Stability, and Cellular Uptake of the Oligonucleotide-Amino-.beta.-cyclodextrins and Adamantane ConjugatesQ41331908
A new class of antivirals: antisense oligonucleotides combined with a hydrophobic substituent effectively inhibit influenza virus reproduction and synthesis of virus-specific proteins in MDCK cellsQ41757503
Live cell surface labeling with fluorescent Ag nanocluster conjugates.Q41780327
In vitro and intracellular production of peptide-encapsulated fluorescent silver nanoclustersQ41807847
Lipid Nanoparticle Delivery of siRNA to Silence Neuronal Gene Expression in the BrainQ41810449
Development and initial application of a hybridization-independent, DNA-encoded reaction discovery system compatible with organic solventsQ41812718
Oligonucleotide-stabilized Ag nanocluster fluorophoresQ41903911
Harnessing a physiologic mechanism for siRNA delivery with mimetic lipoprotein particlesQ41947556
Translation of DNA into a library of 13,000 synthetic small-molecule macrocycles suitable for in vitro selectionQ33379897
A yoctoliter-scale DNA reactor for small-molecule evolutionQ33397577
Optically modulated fluorophores for selective fluorescence signal recoveryQ33418014
Reactivity-dependent PCR: direct, solution-phase in vitro selection for bond formationQ33466944
An in vitro translation, selection and amplification system for peptide nucleic acidsQ33524784
In situ click chemistry: probing the binding landscapes of biological moleculesQ33544415
A sequential strand-displacement strategy enables efficient six-step DNA-templated synthesisQ33927919
Small-molecule discovery from DNA-encoded chemical librariesQ33933125
Double displacement: An improved bioorthogonal reaction strategy for templated nucleic acid detectionQ33938736
Inhibition of Rous sarcoma viral RNA translation by a specific oligodeoxyribonucleotideQ33955866
Synthesis of highly stable fluorescent Ag nanocluster @ polymer nanoparticles in aqueous solutionQ34040049
DNA G-quadruplex-templated formation of the fluorescent silver nanocluster and its application to bioimagingQ34134966
One-pot synthesis of aptamer-functionalized silver nanoclusters for cell-type-specific imagingQ34223903
A new paradigm for aptamer therapeutic AS1411 action: uptake by macropinocytosis and its stimulation by a nucleolin-dependent mechanismQ34268342
DNA-templated organic synthesis: nature's strategy for controlling chemical reactivity applied to synthetic moleculesQ34349058
DNA Encapsulation of 10 Silver Atoms Producing a Bright, Modulatable, Near-Infrared-Emitting ClusterQ34352723
High-yield synthesis of silver nanoclusters protected by DNA monomers and DFT prediction of their photoluminescence properties.Q34543288
Template-directed ligation: from DNA towards different versatile templatesQ34562853
Streamlining hit discovery and optimization with a yoctoliter scale DNA reactorQ34616688
Information transfer from DNA to peptide nucleic acids by template-directed synthesesQ34646002
The growing applications of click chemistryQ34647532
DNA/RNA Detection Using DNA-Templated Few-Atom Silver Nanoclusters.Q34680721
Oligonucleotide conjugates as potential antisense drugs with improved uptake, biodistribution, targeted delivery, and mechanism of actionQ34695694
Convergent DNA synthesis: a non-enzymatic dimerization approach to circular oligodeoxynucleotidesQ34770073
Enzyme-free translation of DNA into sequence-defined synthetic polymers structurally unrelated to nucleic acids.Q34775510
Quantum dots versus organic dyes as fluorescent labelsQ34816662
Potential capacity of aptamers to trigger immune activation in human blood.Q34918601
Imaging of mRNA in live cells using nucleic acid-templated reduction of azidorhodamine probesQ34976714
Structural gene identification and mapping by DNA-mRNA hybrid-arrested cell-free translationQ35056729
Improved templated fluorogenic probes enhance the analysis of closely related pathogenic bacteria by microscopy and flow cytometryQ35228161
Selective inhibition of Escherichia coli protein synthesis and growth by nonionic oligonucleotides complementary to the 3′ end of 16S rRNAQ35323830
Two successive reactions on a DNA template: a strategy for improving background fluorescence and specificity in nucleic acid detectionQ35597389
Carrier-free cellular uptake and the gene-silencing activity of the lipophilic siRNAs is strongly affected by the length of the linker between siRNA and lipophilic groupQ35823611
Specificity, duplex degradation and subcellular localization of antagomirsQ35837407
DNA origami: a quantum leap for self-assembly of complex structures.Q35894131
Strongly emissive individual DNA-encapsulated Ag nanoclusters as single-molecule fluorophoresQ35921578
A modular approach to DNA-programmed self-assembly of macromolecular nanostructuresQ35933152
Amplified microRNA detection by templated chemistryQ35956002
Nucleic-acid-templated synthesis as a model system for ancient translationQ35958550
Interaction of nucleic acids with the glycocalyxQ35964883
Modification of antisense phosphodiester oligodeoxynucleotides by a 5' cholesteryl moiety increases cellular association and improves efficacyQ36087670
Therapeutic silencing of mutant huntingtin with siRNA attenuates striatal and cortical neuropathology and behavioral deficitsQ36089160
Quenched probes for highly specific detection of cellular RNAsQ36113201
Toward site-specific, homogeneous and highly stable fluorescent silver nanoclusters fabrication on triplex DNA scaffoldsQ36228430
7-Azidomethoxy-coumarins as profluorophores for templated nucleic acid detectionQ36493260
Peptide conjugates of oligonucleotides: synthesis and applicationsQ36591545
Detecting RNA and DNA with templated chemical reactionsQ36591551
A fluorescence light-up Ag nanocluster probe that discriminates single-nucleotide variants by emission colorQ36672270
Solving chemical problems through the application of evolutionary principlesQ36840316
DNA-Templated Molecular Silver FluorophoresQ36897108
Ag Nanocluster Formation Using a Cytosine Oligonucleotide TemplateQ37004218
Lung delivery studies using siRNA conjugated to TAT(48-60) and penetratin reveal peptide induced reduction in gene expression and induction of innate immunity.Q37052581
Nucleoside, nucleotide and oligonucleotide based amphiphiles: a successful marriage of nucleic acids with lipidsQ37127281
The exploration of macrocycles for drug discovery--an underexploited structural classQ37203934
Achieving turnover in DNA-templated reactionsQ37254443
siRNA conjugate delivery systemsQ37340480
Solid-phase synthesis of oligonucleotide conjugates useful for delivery and targeting of potential nucleic acid therapeuticsQ37379163
Circular RNA oligonucleotides. Synthesis, nucleic acid binding properties, and a comparison with circular DNAsQ37586340
Enhancement of selectivity in recognition of nucleic acids via chemical autoligationQ37586355
Chemical strategies for the synthesis of peptide-oligonucleotide conjugatesQ37621512
The application of CuAAC 'click' chemistry to catenane and rotaxane synthesisQ37716653
Click chemistry with DNA.Q37716668
Recent developments in oligonucleotide conjugationQ37731362
Fluorescent silver nanoclusters.Q37853425
Hybrid lipid oligonucleotide conjugates: synthesis, self-assemblies and biomedical applicationsQ37879557
DNA-templated fluorescent silver nanoclustersQ37920791
Lipid conjugated oligonucleotides: a useful strategy for deliveryQ37988963
Efficient access to peptidyl-RNA conjugates for picomolar inhibition of non-ribosomal FemX(Wv) aminoacyl transferaseQ46953989
Highly sensitive label-free fluorescent detection of Hg2+ ions by DNA molecular machine-based Ag nanoclustersQ47250905
Expanding the reaction scope of DNA-templated synthesis.Q47831454
Non-hydrolyzable RNA-peptide conjugates: a powerful advance in the synthesis of mimics for 3'-peptidyl tRNA terminiQ47935071
DNA-Ag nanoclusters as fluorescence probe for turn-on aptamer sensor of small moleculesQ48243474
Ion-tuned DNA/Ag fluorescent nanoclusters as versatile logic deviceQ48635075
RNA-templated chemistry in cells: discrimination of Escherichia, Shigella and Salmonella bacterial strains with a new two-color FRET strategyQ50076384
The chemistry and biology of oligonucleotide conjugates.Q42011018
Transfection of living HeLa cells with fluorescent poly-cytosine encapsulated Ag nanoclustersQ42181319
Peptide-mediated Cell and In Vivo Delivery of Antisense Oligonucleotides and siRNA.Q42226373
Graphene oxide/nucleic-acid-stabilized silver nanoclusters: functional hybrid materials for optical aptamer sensing and multiplexed analysis of pathogenic DNAsQ42255689
Reliable semi-synthesis of hydrolysis-resistant 3'-peptidyl-tRNA conjugates containing genuine tRNA modifications.Q42395997
Synthesis of conformationally locked versions of puromycin analoguesQ42589451
Water-soluble Ag nanoclusters exhibit strong two-photon-induced fluorescenceQ42591138
Smart lipids for programmable nanomaterialsQ42648685
DNA-templated covalent coupling of G4 PAMAM dendrimersQ42785645
Shuttle-based fluorogenic silver-cluster biolabelsQ42805576
Synthesis of oligonucleotides carrying amino lipid groups at the 3'-end for RNA interference studies.Q42878516
Synthesis and properties of bile acid phosphoramidites 5'-tethered to antisense oligodeoxynucleotides against HCV.Q43032372
The properties of small Ag clusters bound to DNA basesQ43054927
Modulation of density and orientation of amphiphilic DNA anchored to phospholipid membranes. I. Supported lipid bilayersQ43072220
Lipophilic siRNAs mediate efficient gene silencing in oligodendrocytes with direct CNS deliveryQ43156359
DNA templated nucleophilic aromatic substitution reactions for fluorogenic sensing of oligonucleotidesQ43253067
Constructing glucagon like peptide-1 receptor fused with derivatives of GFP for visualizing protein-protein interaction in living cellsQ43276033
Self-assembly of DNA origami and single-stranded tile structures at room temperatureQ43639776
A convenient solid-phase method for synthesis of 3'-conjugates of oligonucleotidesQ43679698
Nucleic acid template-directed assembly of metallosalen-DNA conjugates.Q43721956
Reduction-triggered fluorescent amplification probe for the detection of endogenous RNAs in living human cells.Q43790678
Internally mismatched RNA: pH and solvent dependence of the thermal unfolding of tRNA(Ala) acceptor stem microhairpinsQ43944526
Quantum dot lipid oligonucleotide bioconjugates: toward a new anti-microRNA nanoplatformQ43950253
Photoinduced electron transfer of DNA/Ag nanoclusters modulated by G-quadruplex/hemin complex for the construction of versatile biosensorsQ44022181
A practical route to 3'-amino-3'-deoxyadenosine derivatives and puromycin analoguesQ44331470
Stem-directed growth of highly fluorescent silver nanoclusters for versatile logic devicesQ44503965
An approach toward SNP detection by modulating the fluorescence of DNA-templated silver nanoclustersQ44509793
Imaging of RNA in bacteria with self-ligating quenched probesQ44682132
New isocysteine building blocks and chemoselective peptide ligationQ44737907
Modular DNA-programmed assembly of linear and branched conjugated nanostructuresQ44744388
Steroid and lipid conjugates of siRNAs to enhance cellular uptake and gene silencing in liver cellsQ45040403
Destabilizing universal linkers for signal amplification in self-ligating probes for RNA.Q45126054
A method for solid-phase synthesis of oligonucleotide 5'-peptide-conjugates using acid-labile alpha-amino protectionsQ45126072
Modified oligonucleotides containing lithocholic acid in their backbones: their enhanced cellular uptake and their mimicking of hairpin structuresQ45130684
Therapeutic silencing of an endogenous gene by systemic administration of modified siRNAsQ45147309
Evidence for rod-shaped DNA-stabilized silver nanocluster emittersQ45160449
Oligonucleotides conjugated to natural lipids: synthesis of phosphatidyl-anchored antisense oligonucleotidesQ45419956
DNA-triggered dye transfer on a quantum dot.Q45901755
Transfer of a protein pattern from self-assembled DNA origami to a functionalized substrate.Q45967367
Total syntheses of a conformationally locked North-type methanocarba puromycin analogue and a dinucleotide derivative.Q46013046
Reduction-triggered red fluorescent probes for dual-color detection of oligonucleotide sequencesQ46132907
The role of reactivity in DNA templated native chemical PNA ligation during PCR.Q46218325
Target-catalyzed transfer reactions for the amplified detection of RNA.Q46447626
A reduction-triggered fluorescence probe for sensing nucleic acidsQ46598503
Rapid and efficient DNA strand cross-linking by click chemistryQ46639911
Lipid-anchored DNA mediates vesicle fusion as observed by lipid and content mixingQ46715201
Fluorescence-based detection of single nucleotide permutation in DNA via catalytically templated reactionQ46793209
Synthesis and properties of oligonucleotides containing a cholesterol thymidine monomerQ46860468
Attachment of cholesterol to amino-LNA: synthesis and hybridization propertiesQ46860614
Few-atom fluorescent silver clusters assemble at programmed sites on DNA nanotubesQ46906938
P921main subjectnanoparticleQ61231
P304page(s)247-327
P577publication date2015-07-23
P1476titleConjugation of DNA with Biomolecules and Nanoparticles

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