The PRIDE database and related tools and resources in 2019: improving support for quantification data (scientific article)

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Q90100743	B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma
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Q104507795	B-Cell-Specific Myd88 L252P Expression Causes a Premalignant Gammopathy Resembling IgM MGUS
Q112758958	BAD regulates mammary gland morphogenesis by 4E-BP1-mediated control of localized translation in mouse and human models
Q112303628	BAF complexes drive proliferation and block myogenic differentiation in fusion-positive rhabdomyosarcoma
Q98771727	BAG5 Promotes Alpha-Synuclein Oligomer Formation and Functionally Interacts With the Autophagy Adaptor Protein p62
Q114191633	BBLN-1 is essential for intermediate filament organization and apical membrane morphology
Q98196799	BRAHMA-interacting proteins BRIP1 and BRIP2 are core subunits of Arabidopsis SWI/SNF complexes
Q112715607	BRD9 is a druggable component of interferon-stimulated gene expression and antiviral activity
Q104563886	BUB-1 targets PP2A:B56 to regulate chromosome congression during meiosis I in C. elegans oocytes
Q99613921	Bacnet: A user-friendly platform for building multi-omics websites
Q112589407	Bacterial ClpP Protease Is a Potential Target for Methyl Gallate
Q92740144	Bacterial Hsp70 resolves misfolded states and accelerates productive folding of a multi-domain protein
Q90075585	Bait Correlation Improves Interactor Identification by Tandem Mass Tag-Affinity Purification-Mass Spectrometry
Q104061640	Beyond Melanin: Proteomics Reveals Virulence-Related Proteins in Paracoccidioides brasiliensis and Paracoccidioides lutzii Yeast Cells Grown in the Presence of L-Dihydroxyphenylalanine
Q112304163	Beyond Self-Resistance: ABCF ATPase LmrC Is a Signal-Transducing Component of an Antibiotic-Driven Signaling Cascade Accelerating the Onset of Lincomycin Biosynthesis
Q99706936	Beyond target-decoy competition: stable validation of peptide and protein identifications in mass spectrometry-based discovery proteomics
Q112766527	Biallelic Variants in PYROXD2 Cause a Severe Infantile Metabolic Disorder Affecting Mitochondrial Function
Q112578801	Bidirectional epithelial-mesenchymal crosstalk provides self-sustaining profibrotic signals in pulmonary fibrosis
Q90441467	Binding to medium and long chain fatty acyls is a common property of HEAT and ARM repeat modules
Q107563258	Biochemical characterization of protease activity of Nsp3 from SARS-CoV-2 and its inhibition by nanobodies
Q91877594	Bioenergetic consequences from xenotopic expression of a tunicate AOX in mouse mitochondria: Switch from RET and ROS to FET
Q113265244	Biogeographic venom variation in Russell’s viper (Daboia russelii) and the preclinical inefficacy of antivenom therapy in snakebite hotspots
Q112709616	Biological and Molecular Effects of Trypanosoma cruzi Residence in a LAMP-Deficient Intracellular Environment
Q113863805	Biological effect of dysregulated LBX1 on adolescent idiopathic scoliosis through modulating muscle carbohydrate metabolism
Q93012488	Biomarker discovery for chronic liver diseases by multi-omics - a preclinical case study
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Q92033265	Biopearling of Interconnected Outer Membrane Vesicle Chains by a Marine Flavobacterium
Q112303311	Biosafety and Proteome Profiles of Different Heat Inactivation Methods for Mycobacterium tuberculosis
Q104102361	Biostimulant Effects of Glutacetine® and Its Derived Formulations Mixed With N Fertilizer on Post-heading N Uptake and Remobilization, Seed Yield, and Grain Quality in Winter Wheat
Q112338245	Biotin-Labelled Clavulanic Acid to Identify Proteins Target for Haptenation in Serum: Implications in Allergy Studies
Q98575772	Biotinylated Surfome Profiling Identifies Potential Biomarkers for Diagnosis and Therapy of Aspergillus fumigatus Infection
Q92885697	Bolt: a New Age Peptide Search Engine for Comprehensive MS/MS Sequencing Through Vast Protein Databases in Minutes
Q112583860	Boosting Detection of Low-Abundance Proteins in Thermal Proteome Profiling Experiments by Addition of an Isobaric Trigger Channel to TMT Multiplexes
Q90388581	Borealin-nucleosome interaction secures chromosome association of the chromosomal passenger complex
Q112279761	BoxCarmax: A High-Selectivity Data-Independent Acquisition Mass Spectrometry Method for the Analysis of Protein Turnover and Complex Samples
Q112635909	Brahma safeguards canalization of cardiac mesoderm differentiation
Q91316560	Broad Substrate-Specific Phosphorylation Events Are Associated With the Initial Stage of Plant Cell Wall Recognition in Neurospora crassa
Q118165217	BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides
Q90660485	Building blocks are synthesized on demand during the yeast cell cycle
Q93180836	Bump-and-Hole Engineering Identifies Specific Substrates of Glycosyltransferases in Living Cells
Q112290618	Burkholderia PglL enzymes are Serine preferring oligosaccharyltransferases which target conserved proteins across the Burkholderia genus
Q100392098	C-Terminal Motifs of the MTW1 Complex Cooperatively Stabilize Outer Kinetochore Assembly in Budding Yeast
Q112304518	C. elegans feed yolk to their young in a form of primitive lactation
Q96291078	CALCOCO1 acts with VAMP-associated proteins to mediate ER-phagy
Q97072761	CASC3 promotes transcriptome-wide activation of nonsense-mediated decay by the exon junction complex
Q97425998	CCPRD: A Novel Analytical Framework for the Comprehensive Proteomic Reference Database Construction of NonModel Organisms
Q96351957	CD11d is a novel antigen on chicken leukocytes
Q108396536	CD209L/L-SIGN and CD209/DC-SIGN Act as Receptors for SARS-CoV-2
Q96823951	CD209L/L-SIGN and CD209/DC-SIGN act as receptors for SARS-CoV-2 and are differentially expressed in lung and kidney epithelial and endothelial cells
Q90699172	CD4+ Th immunogenicity of the Ascaris spp. secreted products
Q91570891	CDK1 and CDK2 regulate NICD1 turnover and the periodicity of the segmentation clock
Q112286349	CDKL5 kinase controls transcription-coupled responses to DNA damage
Q91055873	CEH-60/PBX regulates vitellogenesis and cuticle permeability through intestinal interaction with UNC-62/MEIS in Caenorhabditis elegans
Q89722740	CEP44 ensures the formation of bona fide centriole wall, a requirement for the centriole-to-centrosome conversion
Q112718421	CHIP-dependent regulation of the actin cytoskeleton is linked to neuronal cell membrane integrity
Q99608041	CIITA-transduced glioblastoma cells uncover a rich repertoire of clinically relevant tumor-associated HLA-II antigens
Q108768420	CLICK-enabled analogues reveal pregnenolone interactomes in cancer and immune cells
Q115779951	CLN3 is required for the clearance of glycerophosphodiesters from lysosomes
Q90154448	CLUH granules coordinate translation of mitochondrial proteins with mTORC1 signaling and mitophagy
Q112649511	CPEB1 directs muscle stem cell activation by reprogramming the translational landscape
Q90969231	CREB Signaling Mediates Dose-Dependent Radiation Response in the Murine Hippocampus Two Years after Total Body Exposure
Q112303190	CRYPTOCHROMES promote daily protein homeostasis
Q99349933	CaMKK2 is inactivated by cAMP-PKA signaling and 14-3-3 adaptor proteins
Q102211021	Cadmium stress dictates central carbon flux and alters membrane composition in Streptococcus pneumoniae
Q111894647	Calcium homeostasis and stable fatty acid composition underpin heatwave tolerance of the keystone polychaete Hediste diversicolor
Q99559487	Calcium protects bacteria against cadmium stress via reducing nitric oxide production and increasing iron acquisition
Q90715606	Calretinin is a novel candidate marker for adverse ovarian effects of early life exposure to mixtures of endocrine disruptors in the rat
Q99566998	Can Scoliotic Discs Be Controls for Molecular Studies in Intervertebral Disc Research? Insights From Proteomics
Q104512167	Can cheese mites, maggots and molds enhance bioactivity? Peptidomic investigation of functional peptides in four traditional cheeses
Q90097549	Cannabidiol induces antioxidant pathways in keratinocytes by targeting BACH1
Q98611295	Canonical Notch ligands and Fringes have distinct effects on NOTCH1 and NOTCH2
Q112713085	Capacitive interdigitated system of high osteoinductive/conductive performance for personalized acting-sensing implants
Q112301668	Capillary Electrophoresis Mass Spectrometry for Scalable Single-Cell Proteomics
Q112714480	Carbon Catabolite Repression in Filamentous Fungi Is Regulated by Phosphorylation of the Transcription Factor CreA
Q92239714	Carboxylic acid consumption and production by Corynebacterium glutamicum
Q90482653	Cardiopoietic stem cell therapy restores infarction-altered cardiac proteome
Q97536126	Cathepsin A contributes to left ventricular remodeling by degrading extracellular superoxide dismutase in mice
Q95327765	Cdh1-APC Regulates Protein Synthesis and Stress Granules in Neurons through an FMRP-Dependent Mechanism
Q112281651	Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study
Q114945798	Cell biological analysis reveals an essential role for Pfcerli2 in erythrocyte invasion by malaria parasites
Q98623373	Cell density-dependent proteolysis by HtrA1 induces translocation of zyxin to the nucleus and increased cell survival
Q92894347	Cell-derived extracellular vesicles can be used as a biomarker reservoir for glioblastoma tumor subtyping
Q83225179	Cell-specific non-canonical amino acid labelling identifies changes in the de novo proteome during memory formation
Q98511366	Cellular and Extracellular Proteome of the Animal Pathogen Corynebacterium silvaticum, a Close Relative of Zoonotic Corynebacterium ulcerans and Corynebacterium pseudotuberculosis
Q112300795	Cellular responses to halofuginone reveal a vulnerability of the GCN2 branch of the integrated stress response
Q64056763	Cellular senescence in progenitor cells contributes to diminished remyelination potential in progressive multiple sclerosis
Q104616716	Cerebrospinal Fluid of Preeclamptic and Normotensive Pregnant Women Compared to Nonpregnant Women Analyzed with Mass Spectrometry
Q91871679	Cerebrospinal Fluid-Derived Microvesicles From Sleeping Sickness Patients Alter Protein Expression in Human Astrocytes
Q101565567	Cerebrospinal fluid total tau levels indicate aberrant neuronal plasticity in Alzheimer's disease
Q95337252	Changes in the oligodendrocyte progenitor cell proteome with ageing
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Q91361843	Chaperone-mediated ordered assembly of the SAGA and NuA4 transcription co-activator complexes in yeast
Q112276705	Characterisation of a nucleo-adhesome
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Q95303861	Characterising ISWI chromatin remodeler in Trypanosoma cruzi
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Q112608481	Characterization by Quantitative Serum Proteomics of Immune-Related Prognostic Biomarkers for COVID-19 Symptomatology
Q100315893	Characterization of Clozapine-Responsive Human T Cells
Q115653569	Characterization of Glycosylation-Specific Systemic and Mucosal IgA Antibody Responses to Escherichia coli Mucinase YghJ (SslE)
Q112706923	Characterization of Metronidazole-Resistant Giardia intestinalis Lines by Comparative Transcriptomics and Proteomics
Q112298929	Characterization of Odontogenic Differentiation from Human Dental Pulp Stem Cells Using TMT-Based Proteomic Analysis
Q112301588	Characterization of a highly diverged mitochondrial ATP synthase F_o subunit in Trypanosoma brucei
Q112304718	Characterization of an A3G-Vif_HIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host-Pathogen Complexes
Q97423988	Characterization of cell-free breast cancer patient-derived scaffolds using liquid chromatography-mass spectrometry/mass spectrometry data and RNA sequencing data
Q112282491	Characterization of the AGR2 Interactome Uncovers New Players of Protein Disulfide Isomerase Network in Cancer Cells
Q104610816	Characterization of the Class I MHC Peptidome Resulting from DNCB Exposure of HaCaT Cells
Q112277531	Characterization of the Secretome, Transcriptome, and Proteome of Human β Cell Line EndoC-βH1
Q95287534	Che-1/AATF binds to RNA polymerase I machinery and sustains ribosomal RNA gene transcription
Q89899978	Chemical Genetics of AGC-kinases Reveals Shared Targets of Ypk1, Protein Kinase A and Sch9
Q96164039	Chemical Penetration Enhancers Increase Hydrogen Peroxide Uptake in C. elegans for In Vivo Fast Photochemical Oxidation of Proteins
Q98205356	Chemical proteomics tracks virus entry and uncovers NCAM1 as Zika virus receptor
Q101122050	Child murder in the Early Bronze Age: proteomic sex identification of a cold case from Schleinbach, Austria
Q92943885	Chilling stress reduced protein translation by the ubiquitination of ribosomal proteins in Volvariella volvacea
Q96640350	Chimeric design of pyrrolysyl-tRNA synthetase/tRNA pairs and canonical synthetase/tRNA pairs for genetic code expansion
Q99233529	Cholesterol sensing by CD81 is important for hepatitis C virus entry
Q90317661	Cholesteryl α-D-glucoside 6-acyltransferase enhances the adhesion of Helicobacter pylori to gastric epithelium
Q124981303	Chromatin remodeling is required for sRNA‐guided DNA elimination in Paramecium
Q115253159	Chromatin-Directed Proteomics Identifies ZNF84 as a p53-Independent Regulator of p21 in Genotoxic Stress Response
Q112303447	Chronic treatment with terbutaline increases glucose and oleic acid oxidation and protein synthesis in cultured human myotubes
Q114666686	Circuit-wide proteomics profiling reveals brain region-specific protein signatures in the male WKY rats with endogenous depression
Q112302356	Circulating microvesicles and exosomes in small cell lung cancer by quantitative proteomics
Q112708855	Citrobacter rodentium Infection Induces Persistent Molecular Changes and Interferon Gamma-Dependent Major Histocompatibility Complex Class II Expression in the Colonic Epithelium
Q98944643	Citrus vascular proteomics highlights the role of peroxidases and serine proteases during Huanglongbing disease progression
Q95604059	Clinical classifiers of COVID-19 infection from novel ultra-high-throughput proteomics
Q112643385	Clipper: p-value-free FDR control on high-throughput data from two conditions
Q112303158	Clostridioides difficile Phosphoproteomics Shows an Expansion of Phosphorylated Proteins in Stationary Growth Phase
Q92943881	Clostridium cellulovorans metabolism of cellulose as studied by comparative proteomic approach
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Q117427572	Co-occurrence of Fe and P stress in natural populations of the marine diazotroph <i>Trichodesmium</i>
Q112363402	Co-ordinated control of the Aurora B abscission checkpoint by PKCε complex assembly, midbody recruitment and retention
Q112302345	Co-translational assembly orchestrates competing biogenesis pathways
Q112296606	Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified product
Q112312808	Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity
Q112285476	Cognitive profiling and proteomic analysis of the modafinil analogue S-CE-123 in experienced aged rats
Q108592008	Colistin Dependence in Extensively Drug-Resistant Acinetobacter baumannii Strain Is Associated with ISAjo2 and ISAba13 Insertions and Multiple Cellular Responses
Q112312391	Collagen fiber regulation in human pediatric aortic valve development and disease
Q89882580	Combination of chemotherapy and PD-1 blockade induces T cell responses to tumor non-mutated neoantigens
Q100423808	Combinatory Treatment of Canavanine and Arginine Deprivation Efficiently Targets Human Glioblastoma Cells via Pleiotropic Mechanisms
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Q99711592	Combined Proteome and Transcriptome Analysis of Heat-Primed Azalea Reveals New Insights Into Plant Heat Acclimation Memory
Q89529453	Combined Proteomics and Metabolism Analysis Unravels Prominent Roles of Antioxidant System in the Prevention of Alfalfa (Medicago sativa L.) against Salt Stress
Q112303099	Combined Quantitative (Phospho)proteomics and Mass Spectrometry Imaging Reveal Temporal and Spatial Protein Changes in Human Intestinal Ischemia-Reperfusion
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Q111741674	Combined proteomic strategies for in-depth venomic analysis of the beaked sea snake (Hydrophis schistosus) from Songkhla Lake, Thailand
Q112303829	Combined proteomic/transcriptomic signature of recurrence post-liver transplantation for hepatocellular carcinoma beyond Milan
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Q125341034	Combining mass spectrometry and machine learning to discover bioactive peptides
Q90362611	Common and Strain-Specific Post-Translational Modifications of the Potyvirus Plum pox virus Coat Protein in Different Hosts
Q113817933	Commonalities and specialties in photosynthetic functions of PROTON GRADIENT REGULATION5 variants in Arabidopsis
Q91570533	Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy
Q112758825	Comparative Analysis of Bursaphelenchus xylophilus Secretome Under Pinus pinaster and P. pinea Stimuli
Q112296753	Comparative Analysis of Outer Membrane Vesicle Isolation Methods With an Escherichia coli tolA Mutant Reveals a Hypervesiculating Phenotype With Outer-Inner Membrane Vesicle Content
Q98735417	Comparative Genomic and Secretomic Analysis Provide Insights Into Unique Agar Degradation Function of Marine Bacterium Vibrio fluvialis A8 Through Horizontal Gene Transfer
Q93017557	Comparative Integrated Omics Analysis of the Hfq Regulon in Bordetella pertussis
Q112304988	Comparative Molecular and Immunoregulatory Analysis of Extracellular Vesicles from Candida albicans and Candida auris
Q104746902	Comparative Multi-omics of Tender Shoots From a Novel Evergrowing Tea Cultivar Provide Insight Into Winter Adaptation Mechanism
Q103827469	Comparative Multiplexed Interactomics of SARS-CoV-2 and Homologous Coronavirus Nonstructural Proteins Identifies Unique and Shared Host-Cell Dependencies
Q108591341	Comparative Proteomic and Metabolomic Analysis of Human Osteoblasts, Differentiated from Dental Pulp Stem Cells, Hinted Crucial Signaling Pathways Promoting Osteogenesis
Q112307684	Comparative Proteomics Analysis for Elucidating the Interaction Between Host Cells and Toxoplasma gondii
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Q104613623	Comparative Proteomics of Marinobacter sp. TT1 Reveals Corexit Impacts on Hydrocarbon Metabolism, Chemotactic Motility, and Biofilm Formation
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Q100441120	Comparative Secretomics Gives Access to High Confident Secretome Data: Evaluation of Different Methods for the Determination of bona fide Secreted Proteins
Q96171383	Comparative Target Analysis of Chlorinated Biphenyl Antimicrobials Highlights MenG as Molecular Target of Triclocarban
Q104482805	Comparative analysis of Botrytis cinerea in response to the microbial secondary metabolite benzothiazole using iTRAQ-based quantitative proteomics
Q94548339	Comparative analysis of excretory-secretory products of muscle larvae of three isolates of Trichinella pseudospiralis by the iTRAQ method
Q90076765	Comparative compositional and functional analyses of Bothrops moojeni specimens reveal several individual variations
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Q89720321	Comparative milk proteome analysis of Kashmiri and Jersey cattle identifies differential expression of key proteins involved in immune system regulation and milk quality
Q92157581	Comparative profiling of the synaptic proteome from Alzheimer's disease patients with focus on the APOE genotype
Q92988661	Comparative proteomic study of liver lipid droplets and mitochondria in mice housed at different temperatures
Q100678826	Comparative proteomics analysis of dietary restriction in Drosophila
Q112313522	Comparative proteomics identifies Schlafen 5 (SLFN5) as a herpes simplex virus restriction factor that suppresses viral transcription
Q92224483	Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium
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Q93249685	Comparative proteomics of three Giardia lamblia strains: Investigation of antigenic variation in the post-genomic era
Q104683941	Comparative proteomics provides insights into diapause program of Bactrocera minax (Diptera: Tephritidae)
Q90107166	Comparative study of excretory-secretory proteins released by Schistosoma mansoni-resistant, susceptible and naïve Biomphalaria glabrata
Q121978487	Comparing the contents, functions and neonicotinoid take-up between floral and extrafloral nectar within a single species (Hemerocallis citrina Baroni)
Q91826612	Comparison of Proteome Composition of Serum Enriched in Extracellular Vesicles Isolated from Polycythemia Vera Patients and Healthy Controls
Q94570583	Comparison of a human neuronal model proteome upon Japanese encephalitis or West Nile Virus infection and potential role of mosquito saliva in neuropathogenesis
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Q112313234	Comparison of plasma and cerebrospinal fluid proteomes identifies gene products guiding adult neurogenesis and neural differentiation in birds
Q96642047	Comparison of proteome alterations during aging in the temporal lobe of humans and rhesus macaques
Q112309219	Compartmentalized Proteomic Profiling Outlines the Crucial Role of the Classical Secretory Pathway during Recombinant Protein Production in Chinese Hamster Ovary Cells
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Q112719739	Component Parts of Bacteriophage Virions Accurately Defined by a Machine-Learning Approach Built on Evolutionary Features
Q104267253	Composition and origin of lung fluid proteome in premature infants and relationship to respiratory outcome
Q112285373	Compositional Analysis of Extracellular Aggregates in the Eyes of Patients With Exfoliation Syndrome and Exfoliation Glaucoma
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Q112297867	Comprehensive Succinylome Profiling Reveals the Pivotal Role of Lysine Succinylation in Energy Metabolism and Quorum Sensing of Staphylococcus epidermidis
Q112720205	Comprehensive glycoproteomics shines new light on the complexity and extent of glycosylation in archaea
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Q112277802	Conservation and divergence of myelin proteome and oligodendrocyte transcriptome profiles between humans and mice
Q112305783	Constrained G4 structures unveil topology specificity of known and new G4 binding proteins
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Q94602955	Cystatin B is essential for proliferation and interneuron migration in individuals with EPM1 epilepsy
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Q112281781	Cytoplasmic switch of ARS2 isoforms promotes nonsense-mediated mRNA decay and arsenic sensitivity
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Q112305583	DDX21 is a p38-MAPK-sensitive nucleolar protein necessary for mouse preimplantation embryo development and cell-fate specification
Q91452714	DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput
Q96135950	DICER regulates the expression of major satellite repeat transcripts and meiotic chromosome segregation during spermatogenesis
Q112293432	DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network
Q92325299	DamC reveals principles of chromatin folding in vivo without crosslinking and ligation
Q112284012	Danger signal extracellular calcium initiates differentiation of monocytes into SPP1/osteopontin-producing macrophages
Q112723756	Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future
Q98226299	Data on proteome of Mycoplasma hominis cultivated with arginine or thymidine as a carbon source
Q97424044	Data set of the proteome of fresh and frozen thawed stallion spermatozoa
Q97527495	Dataset of bovine mammary gland dry secretion proteome from the end of lactation through day 21 of the dry period
Q94572225	Dataset on interactors of the Arabidopsis thaliana Plant Natriuretic Peptide (AtPNP-A) determined by mass spectrometry
Q91016838	Datasets: Sensitivity and protein digestion course of proteomic Filter Aided Sample Preparation
Q112364941	Deacetylation as a receptor-regulated direct activation switch for pannexin channels
Q108503122	Deamidation drives molecular aging of the SARS-CoV-2 spike protein receptor-binding motif
Q112704993	Deciphering Black Extrinsic Tooth Stain Composition in Children Using Metaproteomics
Q97558225	Deciphering and predicting CD4+ T cell immunodominance of influenza virus hemagglutinin
Q89702080	Deciphering the human phosphoproteome
Q112731260	Deciphering the immunogenic potential of wheat flour: a reference map of the salt-soluble proteome from the U.S. wheat Butte 86
Q112344553	Deciphering the mechanism of processive ssDNA digestion by the Dna2-RPA ensemble
Q98944963	Deciphering the secretome of leukocyte-platelet rich fibrin: towards a better understanding of its wound healing properties
Q98613221	Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening
Q91578534	Decreased synthesis of ribosomal proteins in tauopathy revealed by non-canonical amino acid labelling
Q99559608	Deep learning in proteomics
Q111441106	Deep learning the collisional cross sections of the peptide universe from a million experimental values
Q112289564	Deep-coverage spatiotemporal proteome of the picoeukaryote Ostreococcus tauri reveals differential effects of environmental and endogenous 24-hour rhythms
Q96126266	Defective NADPH production in mitochondrial disease complex I causes inflammation and cell death
Q109922300	Defective NET clearance contributes to sustained FXII activation in COVID-19-associated pulmonary thrombo-inflammation
Q112301467	Deficiency in coatomer complex I causes aberrant activation of STING signalling
Q89595403	Defining the Adult Neural Stem Cell Niche Proteome Identifies Key Regulators of Adult Neurogenesis
Q112277986	Defining the Caprin-1 Interactome in Unstressed and Stressed Conditions
Q93086905	Defining the NSD2 interactome: PARP1 PARylation reduces NSD2 histone methyltransferase activity and impedes chromatin binding
Q112304977	Defining the RBPome of primary T helper cells to elucidate higher-order Roquin-mediated mRNA regulation
Q92827611	Degradome of soluble ADAM10 and ADAM17 metalloproteases
Q112312533	Deletion of the ATP2 Gene in Candida albicans Blocks Its Escape From Macrophage Clearance
Q102211119	Deletion of the deISGylating enzyme USP18 enhances tumour cell antigenicity and radiosensitivity
Q92649503	Dentate Gyrus Peroxiredoxin 6 Levels Discriminate Aged Unimpaired From Impaired Rats in a Spatial Memory Task
Q89867948	Depletion of histone methyltransferase KMT9 inhibits lung cancer cell proliferation by inducing non-apoptotic cell death
Q90729768	Depletion of the FtsH1/3 Proteolytic Complex Suppresses the Nutrient Stress Response in the Cyanobacterium Synechocystis sp strain PCC 6803
Q112312894	Dermatopontin as a potential pathogenic factor in endometrial cancer
Q97887133	Descriptive Proteome Analysis to Investigate Context-Dependent Treatment Responses to OXPHOS Inhibition in Colon Carcinoma Cells Grown as Monolayer and Multicellular Tumor Spheroids
Q112298717	Design and evaluation of synthetic bacterial consortia for optimized phenanthrene degradation through the integration of genomics and shotgun proteomics
Q112300811	Design of a Potent, Selective, and Brain-Penetrant Inhibitor of Wnt-Deactivating Enzyme Notum by Optimization of a Crystallographic Fragment Hit
Q112305971	Design of a Proteolytically Stable Sodium-Calcium Exchanger 1 Activator Peptide for In Vivo Studies
Q91062089	Desumoylation of RNA polymerase III lies at the core of the Sumo stress response in yeast
Q92687454	Detecting single amino acids and small peptides by combining isobaric tags and peptidomics
Q104258750	Detection and Quantification of Novel C-terminal TDP-43 Fragments in ALS-TDP
Q92840018	Detection and verification of 2.3 million cancer mutations in NCI60 cancer cell lines with a cloud search engine
Q98392346	Detection of Tear Components Using Matrix-Assisted Laser Desorption Ionization/Time-of-Flight Mass Spectrometry for Rapid Dry Eye Diagnosis
Q112277411	Deubiquitinating enzymes and the proteasome regulate preferential sets of ubiquitin substrates
Q96019440	Development and Validation of an in-House Library of Colombian Candida auris Strains with MALDI-TOF MS to Improve Yeast Identification
Q112286224	Development of Methodology to Investigate the Surface SMALPome of Mammalian Cells
Q92360116	Development of a Retinal-Based Probe for the Profiling of Retinaldehyde Dehydrogenases in Cancer Cells
Q92585371	Development of a Robust Ultrasonic-Based Sample Treatment To Unravel the Proteome of OCT-Embedded Solid Tumor Biopsies
Q99723820	Deviant proteome profile of equine granulocytes associates to latent activation status in organ specific autoimmune disease
Q99553586	Diabetic nephropathy associates with deregulation of enzymes involved in kidney sulphur metabolism
Q112313188	Dietary Inclusion of Black Soldier Fly (Hermetia Illucens) Larvae Meal and Paste Improved Gut Health but Had Minor Effects on Skin Mucus Proteome and Immune Response in Atlantic Salmon (Salmo Salar)
Q94568676	Differences and commonalities in plasma membrane recruitment of the two morphogenetically distinct retroviruses HIV-1 and MMTV
Q92725300	Differential Chloroplast Proteomics of Temperature Adaptation in Apple (Malus x domestica Borkh.) Microshoots
Q112303494	Differential Effects of Insulin-Deficient Diabetes Mellitus on Visceral vs. Subcutaneous Adipose Tissue-Multi-omics Insights From the Munich MIDY Pig Model
Q114392351	Differential Expression of Estrogen-Responsive Genes in Women with Psoriasis
Q112640167	Differential Expression of Proteins in an Atypical Presentation of Autoimmune Lymphoproliferative Syndrome
Q104102069	Differential Profile of Systemic Extracellular Vesicles From Sporadic and Familial Alzheimer's Disease Leads to Neuroglial and Endothelial Cell Degeneration
Q91635553	Differential Proteomic Analysis of Chinese Giant Salamander Liver in Response to Fasting
Q90350046	Differential distributions of trafficking and signaling proteins of the maize ER-Golgi apparatus
Q112729484	Differential proteomic analysis by SWATH-MS unravels the most dominant mechanisms underlying yeast adaptation to non-optimal temperatures under anaerobic conditions
Q90278222	Differential quantitative proteomics reveals the functional difference of two yigP locus products, UbiJ and EsrE
Q94686204	Differential responses to kinase inhibition in FGFR2-addicted triple negative breast cancer cells: a quantitative phosphoproteomics study
Q64114327	Differential role for phosphorylation in alternative polyadenylation function versus nuclear import of SR-like protein CPSF6
Q91106514	Differential scaling between G1 protein production and cell size dynamics promotes commitment to the cell division cycle in budding yeast
Q101573917	Digital microfluidic isolation of single cells for -Omics
Q104465169	Dioscorea alata Tuber Proteome Analysis Uncovers Differentially Regulated Growth Associated Pathways of Tuber Development
Q101239761	Direct Acetonitrile-Assisted Trypsin Digestion Method Combined with LC-MS/MS-Targeted Peptide Analysis for Unambiguous Identification of Intact Ricin
Q89798656	DirectMS1: MS/MS-Free Identification of 1000 Proteins of Cellular Proteomes in 5 Minutes
Q112313394	Discovery and validation of FBLN1 and ANT3 as potential biomarkers for early detection of cervical cancer
Q92728022	Discovery of Covalent CDK14 Inhibitors with Pan-TAIRE Family Specificity
Q112290063	Discovery of Novel Markers for Identifying Cognitive Decline Using Neuron-Derived Exosomes
Q96219751	Discovery of TBC1D7 as a Potential Driver for Melanoma Cell Invasion
Q94538384	Discovery of Widespread Host Protein Interactions with the Pre-replicated Genome of CHIKV Using VIR-CLASP
Q114154877	Discovery proteomics for the detection of putative markers for eradication of infection in an experimental model of equine septic arthritis using LC-MS/MS
Q112572216	Discrimination of Tilletia controversa from the T. caries/T. laevis complex by MALDI-TOF MS analysis of teliospores
Q63987396	Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1
Q112299338	Disome-seq reveals widespread ribosome collisions that promote cotranslational protein folding
Q92434396	Disrupted ER membrane protein complex-mediated topogenesis drives congenital neural crest defects
Q93152963	Dissecting the Roles of Mitochondrial Complex I Intermediate Assembly Complex Factors in the Biogenesis of Complex I
Q98513719	Dissimilatory sulfate reduction in the archaeon 'Candidatus Vulcanisaeta moutnovskia' sheds light on the evolution of sulfur metabolism
Q115778879	Distinct gene clusters drive formation of ferrosome organelles in bacteria
Q90543089	Distinct roles for H4 and H2A.Z acetylation in RNA transcription in African trypanosomes
Q112313171	Disturbed intramitochondrial phosphatidic acid transport impairs cellular stress signaling
Q91607278	Diversity in Aβ deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosis
Q103831813	Divide-and-Conquer Matrisome Protein (DC-MaP) Strategy: An MS-Friendly Approach to Proteomic Matrisome Characterization
Q112304503	Domain Organization of the UBX Domain Containing Protein 9 and Analysis of Its Interactions With the Homohexameric AAA + ATPase p97 (Valosin-Containing Protein)
Q112301103	Double-Stranded RNA Viruses Are Released From Trichomonas vaginalis Inside Small Extracellular Vesicles and Modulate the Exosomal Cargo
Q112700363	Doublecortin engages the microtubule lattice through a cooperative binding mode involving its C-terminal domain
Q112301926	Downregulation of KRAB zinc finger proteins in 5-fluorouracil resistant colorectal cancer cells
Q114090697	Drought induces epitranscriptome and proteome changes in stem-differentiating xylem of Populus trichocarpa
Q92767762	Dual chemical probes enable quantitative system-wide analysis of protein prenylation and prenylation dynamics
Q115714474	Dynamic 23S rRNA modification ho5C2501 benefits Escherichia coli under oxidative stress
Q104567478	Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ
Q91983133	Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis
Q112312746	Dynamic Changes to the Skeletal Muscle Proteome and Ubiquitinome Induced by the E3 Ligase, ASB2β
Q92087431	Dynamic Growth and Shrinkage of the Salmonella-Containing Vacuole Determines the Intracellular Pathogen Niche
Q91883925	Dynamic Phosphoproteome Profiling of Zebrafish Embryonic Fibroblasts during Cold Acclimation
Q96577261	Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping
Q90790744	Dynamic Surface Proteomes of Allergenic Fungal Conidia
Q97530521	Dynamic palmitoylation events following T-cell receptor signaling
Q92726470	Dynamic post-translational modification profiling of Mycobacterium tuberculosis-infected primary macrophages
Q92981053	Dynamic response in the larval geoduck (Panopea generosa) proteome to elevated pCO2
Q95267254	Dynamic transcriptomic and phosphoproteomic analysis during cell wall stress in Aspergillus nidulans
Q120483233	Dynamics and Composition of Small Heat Shock Protein Condensates and Aggregates
Q102075596	Dynamics of an LPS translocon induced by substrate and an antimicrobial peptide
Q104757345	Dysregulation of phosphoproteins in hepatocellular carcinoma revealed via quantitative analysis of the phosphoproteome
Q90616642	ECE2 regulates neurogenesis and neuronal migration during human cortical development
Q112570769	ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation
Q114873456	EMT-Derived Alterations in Glutamine Metabolism Sensitize Mesenchymal Breast Cells to mTOR Inhibition
Q92153506	EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming
Q92896203	EPIFANY: A Method for Efficient High-Confidence Protein Inference
Q104467191	ERCC1 mutations impede DNA damage repair and cause liver and kidney dysfunction in patients
Q91014908	ERO1α promotes hypoxic tumor progression and is associated with poor prognosis in pancreatic cancer
Q111320042	Ecological Interactions of Cyanobacteria and Heterotrophs Enhances the Robustness of Cyanobacterial Consortium for Carbon Sequestration
Q112304946	Effect and Response of Quercus ilex subsp. ballota [Desf.] Samp. Seedlings From Three Contrasting Andalusian Populations to Individual and Combined Phytophthora cinnamomi and Drought Stresses
Q64074496	Effect of MSCs and MSC-Derived Extracellular Vesicles on Human Blood Coagulation
Q112304633	Effects of Combinatorial Ubiquitinated Protein-Based Nanovaccine and STING Agonist in Mice With Drug-Resistant and Metastatic Breast Cancer
Q102386420	Effects of Excess Manganese on the Xylem Sap Protein Profile of Tomato (Solanum lycopersicum) as Revealed by Shotgun Proteomic Analysis
Q118414921	Effects of TDP-43 overexpression on neuron proteome and morphology in vitro
Q90066330	Efficient Catalysis of Protein Folding by GroEL/ES of the Obligate Chaperonin Substrate MetF
Q91721698	Efficient T cell-B cell collaboration guides autoantibody epitope bias and onset of celiac disease
Q112352143	Elastogenesis Correlates With Pigment Production in Murine Aortic Valve Leaflets
Q92180622	Electron Transfer/Higher Energy Collisional Dissociation of Doubly Charged Peptide Ions: Identification of Labile Protein Phosphorylations
Q101126208	Electron-Based Dissociation Is Needed for O-Glycopeptides Derived from OpeRATOR Proteolysis
Q114109977	Electrostatic and steric effects underlie acetylation-induced changes in ubiquitin structure and function
Q112301183	Elevation of fatty acid desaturase 2 in esophageal adenocarcinoma increases polyunsaturated lipids and may exacerbate bile acid-induced DNA damage
Q112199057	Elp2 mutations perturb the epitranscriptome and lead to a complex neurodevelopmental phenotype
Q112747436	Elucidation of the Translation Initiation Factor Interaction Network of Haloferax volcanii Reveals Coupling of Transcription and Translation in Haloarchaea
Q112294728	Embryonic developmental arrest in the annual killifish Austrolebias charrua: A proteomic approach to diapause III
Q114583739	Ena/VASP proteins at the crossroads of actin nucleation pathways in dendritic cell migration
Q67519302	Enamel peptides reveal the sex of the Late Antique ‘Lovers of Modena’
Q90194165	Endoglin Protein Interactome Profiling Identifies TRIM21 and Galectin-3 as New Binding Partners
Q99593633	Endoplasmic reticulum chaperones stabilize ligand-receptive MR1 molecules for efficient presentation of metabolite antigens
Q97650629	Endoplasmic reticulum stress-mediated mitochondrial dysfunction in aged hearts
Q92932432	Endothelial progeria induces adipose tissue senescence and impairs insulin sensitivity through senescence associated secretory phenotype
Q98178407	Endothelial-Derived Interleukin-1α Activates Innate Immunity by Promoting the Bactericidal Activity of Transendothelial Neutrophils
Q100632993	Engineering Af1521 improves ADP-ribose binding and identification of ADP-ribosylated proteins
Q112642463	Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome
Q112567069	Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELF
Q90725402	Enhancing Top-Down Proteomics Data Analysis by Combining Deconvolution Results through a Machine Learning Strategy
Q112081074	Enriched conditioning expands the regenerative ability of sensory neurons after spinal cord injury via neuronal intrinsic redox signaling
Q92007573	Enrichment and identification of small proteins in a simplified human gut microbiome
Q98719770	Enrichment of microsomes from Chinese hamster ovary cells by subcellular fractionation for its use in proteomic analysis
Q95934127	Ensuring meiotic DNA break formation in the mouse pseudoautosomal region
Q100514096	Enterococcus faecium NCIMB10415 responds to norepinephrine by altering protein profiles and phenotypic characters
Q112700873	Environmental cues from neural crest derivatives act as metastatic triggers in an embryonic neuroblastoma model
Q112311391	Environmentally relevant concentrations of titanium dioxide nanoparticles pose negligible risk to marine microbes
Q101048599	Enzymatic Dissociation Induces Transcriptional and Proteotype Bias in Brain Cell Populations
Q119472027	Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes
Q99562334	Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production
Q112290670	Epigenetic inactivation of the autophagy-lysosomal system in appendix in Parkinson's disease
Q97417360	Epitope Shaving Promotes Fungal Immune Evasion
Q111442142	Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome
Q94646973	Erratum: In-Depth, Proteomic Analysis of Nasal Secretions from Patients With Chronic Rhinosinusitis and Nasal Polyps
Q115755539	Escherichia coli FabG 3-ketoacyl-ACP reductase proteins lacking the assigned catalytic triad residues are active enzymes
Q104064357	Establishing a mass spectrometry-based system for rapid detection of SARS-CoV-2 in large clinical sample cohorts
Q90234159	Evaluating False Transfer Rates from the Match-between-Runs Algorithm with a Two-Proteome Model
Q108127296	Evaluation of Protein Purification Techniques and Effects of Storage Duration on LC-MS/MS Analysis of Archived FFPE Human CRC Tissues
Q90290451	Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry
Q92638624	Evaluation of sodium deoxycholate as solubilization buffer for oil palm proteomics analysis
Q91145350	Evidence for a role of protein phosphorylation in the maintenance of the cnidarian-algal symbiosis
Q112302565	Evidence for a trap-and-flip mechanism in a proton-dependent lipid transporter
Q112313260	Evidences for a Nutritional Role of Iodine in Plants
Q90574892	Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom
Q112157831	Evolution of Polymyxin Resistance Regulates Colibactin Production in
Q125289505	Ex vivo glucocorticoid‐induced secreted proteome approach for discovery of glucocorticoid‐responsive proteins in human serum
Q97676958	Ex-Vivo Equine Cartilage Explant Osteoarthritis Model - A Metabolomics and Proteomics Study
Q114921920	Excitatory and Inhibitory Learning-Related Signaling Induce Unique Changes in lncRNA-miRNA-mRNA Networks in Hippocampal Neurons
Q91711345	Exercise Training in Obese Rats Does Not Induce Browning at Thermoneutrality and Induces a Muscle-Like Signature in Brown Adipose Tissue
Q112641781	Exercise prevents fatty liver by modifying the compensatory response of mitochondrial metabolism to excess substrate availability
Q112300919	Exercise training reverses cancer-induced oxidative stress and decrease in muscle COPS2/TRIP15/ALIEN
Q112315481	Exercise-dependent increases in protein synthesis are accompanied by chromatin modifications and increased MRTF-SRF signalling
Q112362093	Exon junction complex-associated multi-adapter RNPS1 nucleates splicing regulatory complexes to maintain transcriptome surveillance
Q112291478	Exosome-Depleted Excretory-Secretory Products of the Fourth-Stage Larval Angiostrongylus cantonensis Promotes Alternative Activation of Macrophages Through Metabolic Reprogramming by the PI3K-Akt Pathway
Q97556346	Expanding the depth and sensitivity of cross-link identification by differential ion mobility using FAIMS
Q100421532	Expanding the efflux in vitro assay toolbox: A CRISPR-Cas9 edited MDCK cell line with human BCRP and completely lacking canine MDR1
Q90975735	Expedited mapping of the ligandable proteome using fully functionalized enantiomeric probe pairs
Q91016376	Experimental data from flesh quality assessment and shelf life monitoring of high pressure processed European sea bass (Dicentrarchus labrax) fillets
Q112280257	Experimental evolution links post-transcriptional regulation to Leishmania fitness gain
Q99420907	Exploring GPCR-arrestin interfaces with genetically encoded crosslinkers
Q112306051	Exploring antimicrobial resistance to beta-lactams, aminoglycosides and fluoroquinolones in E. coli and K. pneumoniae using proteogenomics
Q100445022	Exploring metal availability in the natural niche of Streptococcus pneumoniae to discover potential vaccine antigens
Q98886332	Exploring the Diversity of Cysteine-Rich Natural Product Peptides via MS/MS Fingerprint Ions
Q90484469	Exploring the HeLa Dark Mitochondrial Proteome
Q112650482	Exploring the Multi-Tissue Crosstalk Relevant to Insulin Resistance Through Network-Based Analysis
Q102073139	Exploring the Role of a Novel Peptide from Allomyrina dichotoma Larvae in Ameliorating Lipid Metabolism in Obesity
Q92964521	Exploring the extracellular matrix in health and disease using proteomics
Q91007034	Expression Atlas update: from tissues to single cells
Q112805984	Expression Atlas update: gene and protein expression in multiple species
Q112305231	Expression of a human cDNA in moss results in spliced mRNAs and fragmentary protein isoforms
Q96165536	Extending the Comprehensiveness of Immunopeptidome Analyses Using Isobaric Peptide Labeling
Q99555075	Extensive SUMO Modification of Repressive Chromatin Factors Distinguishes Pluripotent from Somatic Cells
Q109649684	Extensive heterogeneity of glycopeptides in plasma revealed by deep glycoproteomic analysis using size-exclusion chromatography
Q91698035	Extensive protein S-nitrosylation associated with human pancreatic ductal adenocarcinoma pathogenesis
Q114872741	Extensive regulation of enzyme activity by phosphorylation in Escherichia coli
Q112293342	Extensive three-dimensional intratumor proteomic heterogeneity revealed by multiregion sampling in high-grade serous ovarian tumor specimens
Q112304044	Extracellular LGALS3BP regulates neural progenitor position and relates to human cortical complexity
Q104486330	Extracellular MIF, but not its homologue D-DT, promotes fibroblast motility independent of its receptor CD74/CD44
Q112313176	Extracellular Vesicles Derived From Adult and Fetal Bone Marrow Mesenchymal Stromal Cells Differentially Promote ex vivo Expansion of Hematopoietic Stem and Progenitor Cells
Q112302033	Extracellular Vesicles From LPS-Treated Macrophages Aggravate Smooth Muscle Cell Calcification by Propagating Inflammation and Oxidative Stress
Q112284928	Extracellular Vesicles Induce an Aggressive Phenotype in Luminal Breast Cancer Cells Via PKM2 Phosphorylation
Q110596159	Extracellular Vesicles from Pancreatic Cancer Stem Cells Lead an Intratumor Communication Network (EVNet) to fuel tumour progression
Q91570844	Extracellular vesicles impose quiescence on residual hematopoietic stem cells in the leukemic niche
Q97520037	Extreme Acetylation of the Cardiac Mitochondrial Proteome Does Not Promote Heart Failure
Q112703673	FAIMS Enhances the Detection of PTM Crosstalk Sites
Q83229853	FAK activity sustains intrinsic and acquired ovarian cancer resistance to platinum chemotherapy
Q98294540	FAM111 protease activity undermines cellular fitness and is amplified by gain-of-function mutations in human disease
Q104585428	FAM111A induces nuclear dysfunction in disease and viral restriction
Q92598643	FAM134B oligomerization drives endoplasmic reticulum membrane scission for ER-phagy
Q89748657	FANCD2-FANCI is a clamp stabilized on DNA by monoubiquitination of FANCD2 during DNA repair
Q114872689	FASN-dependent de novo lipogenesis is required for brain development
Q96290065	FBXL4 deficiency increases mitochondrial removal by autophagy
Q64066528	FET family fusion oncoproteins target the SWI/SNF chromatin remodeling complex
Q112305704	FIP200 controls the TBK1 activation threshold at SQSTM1/p62-positive condensates
Q112312530	FMRP attenuates activity dependent modifications in the mitochondrial proteome
Q112722091	Fabrication, Rheological, and Compositional Characterization of Thermoresponsive Hydrogel from Cornea
Q109592824	Facilitating In Situ Cross-Linking and Mass Spectrometry by Antibody-Based Protein Enrichment
Q100412968	Faecal microbiota transplant from aged donor mice affects spatial learning and memory via modulating hippocampal synaptic plasticity- and neurotransmission-related proteins in young recipients
Q112305240	Faecal proteomics as a novel method to study mammalian behaviour and physiology
Q100753076	Fasnall Induces Atypically Transient Stress Granules Independently of FASN Inhibition
Q104491334	Fast Deisotoping Algorithm and Its Implementation in the MSFragger Search Engine
Q91586264	Fast and Highly Efficient Affinity Enrichment of Azide-A-DSBSO Cross-Linked Peptides
Q90294062	Fast and Robust Proteome Screening Platform Identifies Neutrophil Extracellular Trap Formation in the Lung in Response to Cobalt Ferrite Nanoparticles
Q100455183	Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco
Q112302388	Fast and global reorganization of the chloroplast protein biogenesis network during heat acclimation
Q112302934	Fasting improves therapeutic response in hepatocellular carcinoma through p53-dependent metabolic synergism
Q112295123	Feasibility of Phosphoproteomics on Leftover Samples After RNA Extraction With Guanidinium Thiocyanate
Q112307405	Feature Selection Methods for Protein Biomarker Discovery from Proteomics or Multiomics Data
Q92289871	Fetal androgen exposure is a determinant of adult male metabolic health
Q96220351	Fibrillar Aβ triggers microglial proteome alterations and dysfunction in Alzheimer mouse models
Q90238241	Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease
Q111438878	Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease
Q96225223	First Clinical and Myopathological Description of a Myofibrillar Myopathy with Congenital Onset and Homozygous Mutation in FLNC
Q112290668	First identification of ITM2B interactome in the human retina
Q101564224	First sequencing of ancient coral skeletal proteins
Q104612952	Flow Cytometry Analysis of Circulating Extracellular Vesicle Subtypes from Fresh Peripheral Blood Samples
Q93214321	Flow-induced reorganization of laminin-integrin networks within the endothelial basement membrane uncovered by proteomics
Q112286952	Fluvastatin mitigates SARS-CoV-2 infection in human lung cells
Q98391841	Formaldehyde Derivatization, an Unexpected Side Reaction During Filter-Aided Sample Preparation
Q90931192	Francisella tularensis subsp. holarctica Releases Differentially Loaded Outer Membrane Vesicles Under Various Stress Conditions
Q103739332	Frequent assembly of chimeric complexes in the protein interaction network of an interspecies yeast hybrid
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Q103823029	Function and Regulation of the Pyruvate Transporter CstA in Escherichia coli
Q91775725	Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α
Q90890718	Functional and proteomic analysis of a full thickness filaggrin-deficient skin organoid model
Q112279669	Functional and structural deficiencies of Gemin5 variants associated with neurological disorders
Q114873373	Functional changes of the gastric bypass microbiota reactivate thermogenic adipose tissue and systemic glucose control via intestinal FXR-TGR5 crosstalk in diet-induced obesity
Q91823046	Functional changes of the liver in the absence of growth hormone (GH) action - Proteomic and metabolomic insights from a GH receptor deficient pig model
Q112302240	Functional characterization of the human Cdk10/Cyclin Q complex
Q97871496	Functional milk proteome analysis of genetically diverse goats from different agro climatic regions
Q89866117	Functional omics analyses reveal only minor effects of microRNAs on human somatic stem cell differentiation
Q90425497	Functional recruitment of dynamin requires multimeric interactions for efficient endocytosis
Q104609925	Functional studies of CpSRP54 in diatoms show that the mechanism of thylakoid protein insertion differs from plants and green algae
Q96689588	Functional surface proteomic profiling reveals the host heat-shock protein A8 as a mediator of Lichtheimia corymbifera recognition by murine alveolar macrophages
Q100394755	Fusidic acid resistance through changes in the dynamics of the drug target
Q112713263	G3BP1 inhibits Cul3^SPOP to amplify AR signaling and promote prostate cancer
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Q112177954	GAS6-AXL signaling triggers actin remodeling and macropinocytosis that drive cancer cell invasion
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Q112286140	GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors
Q104488954	GFOGER Peptide Modifies the Protein Content of Extracellular Vesicles and Inhibits Vascular Calcification
Q112361126	GM-CSF Nitration Is a New Driver of Myeloid Suppressor Cell Activity in Tumors
Q90925574	GUN1 influences the accumulation of NEP-dependent transcripts and chloroplast protein import in Arabidopsis cotyledons upon perturbation of chloroplast protein homeostasis
Q91329367	Galnt11 regulates kidney function by glycosylating the endocytosis receptor megalin to modulate ligand binding
Q89599740	Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
Q112580296	Gastrobodies are engineered antibody mimetics resilient to pepsin and hydrochloric acid
Q104570545	GeLC-Orbitrap/MS and 2-DE-MALDI-TOF/TOF comparative proteomics analysis of seed cotyledons from the non-orthodox Quercus ilex tree species
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Q114110010	Generation of an Escherichia coli strain growing on methanol via the ribulose monophosphate cycle
Q91650532	Genetic Deletion of Zebrafish Rab28 Causes Defective Outer Segment Shedding, but Not Retinal Degeneration
Q112284110	Genetic alterations of the SUMO isopeptidase SENP6 drive lymphomagenesis and genetic instability in diffuse large B-cell lymphoma
Q112290396	Genetic architecture underlying the expression of eight α-amylase trypsin inhibitors
Q114092794	Genetic background and mistranslation frequency determine the impact of mistranslating tRNASerUGG
Q112304755	Genetic depletion of the RNA helicase DDX3 leads to impaired elongation of translating ribosomes triggering co-translational quality control of newly synthesized polypeptides
Q99616677	Genetic screens reveal a central role for heme metabolism in artemisinin susceptibility
Q90923947	Genetical and O-glycoproteomic analyses reveal the roles of three protein O-mannosyltransferases in phytopathogen Fusarium oxysporum f.sp. cucumerinum
Q103727250	Genome- and Proteome-Wide Analysis of Lysine Acetylation in Vibrio vulnificus Vv180806 Reveals Its Regulatory Roles in Virulence and Antibiotic Resistance
Q97642361	Genome-Scale Transcription-Translation Mapping Reveals Features of Zymomonas mobilis Transcription Units and Promoters
Q100300830	Genome-Wide Identification of Dickeya solani Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host Solanum tuberosum and a Weed-Host Solanum dulcamara
Q119075871	Genome-scale metabolic modeling reveals metabolic trade-offs associated with lipid production in Rhodotorula toruloides
Q89534699	Genome-wide analysis and phosphorylation sites identification of the 14-3-3 gene family and functional characterization of MeGRF3 in cassava
Q112638823	Genome-wide screening identifies Polycomb repressive complex 1.3 as an essential regulator of human naïve pluripotent cell reprogramming
Q118841552	Genomic ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from San Teodoro cave
Q112302850	Genomic and Proteomic Study of Andreprevotia ripae Isolated from an Anthill Reveals an Extensive Repertoire of Chitinolytic Enzymes
Q118948554	Genomic, functional and structural analyses elucidate evolutionary innovation within the sea anemone 8 toxin family
Q111899316	Genoppi is an open-source software for robust and standardized integration of proteomic and genetic data
Q89757721	Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes
Q92682038	Gigaxonin glycosylation regulates intermediate filament turnover and may impact giant axonal neuropathy etiology or treatment
Q112304457	Global Profiling of the Lysine Crotonylome in Different Pluripotent States
Q92355073	Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains
Q93122092	Global Quantification of Intact Proteins via Chemical Isotope Labeling and Mass Spectrometry
Q90764675	Global Secretome Characterization of the Pathogenic Yeast Candida glabrata
Q97535535	Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein
Q112305580	Global kinome profiling reveals DYRK1A as critical activator of the human mitochondrial import machinery
Q112313457	Global mapping of protein-metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity
Q112313058	Global miRNA/proteomic analyses identify miRNAs at 14q32 and 3p21, which contribute to features of chronic iron-exposed fallopian tube epithelial cells
Q112283460	Global mitochondrial protein import proteomics reveal distinct regulation by translation and translocation machinery
Q104073115	Global proteomics of Ubqln2-based murine models of ALS
Q99564656	Global reprogramming of virulence and antibiotic resistance in Pseudomonas aeruginosa by a single nucleotide polymorphism in elongation factor, fusA1
Q90860840	Glucocorticoid Treatment Leads to Aberrant Ion and Macromolecular Transport in Regenerating Zebrafish Fins
Q112584912	Glucocorticoid receptor Thr524 phosphorylation by MINK1 induces interactions with 14-3-3 protein regulators
Q92198837	Glycated Plasma Proteins as More Sensitive Markers for Glycemic Control in Type 1 Diabetes
Q91558418	Glycogen branching enzyme controls cellular iron homeostasis via Iron Regulatory Protein 1 and mitoNEET
Q112733753	Glycolysis Dependency as a Hallmark of SF3B1-Mutated Cells
Q112291333	Glycolysis downregulation is a hallmark of HIV-1 latency and sensitizes infected cells to oxidative stress
Q91415064	Glycolytic profile shift and antioxidant triggering in symbiont-free and H2O2-resistant Strigomonas culicis
Q92635751	Glycome and Proteome Components of Golgi Membranes Are Common between Two Angiosperms with Distinct Cell-Wall Structures
Q94934138	Glycopeptide Biomarkers in Serum Haptoglobin for Hepatocellular Carcinoma Detection in Patients with Non-Alcoholic Steatohepatitis
Q89972755	Glycopeptide variable window SWATH for improved data independent acquisition glycoprotein analysis
Q116181589	Glycoproteomics
Q90074273	Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy
Q110962135	Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
Q98566333	Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
Q111149691	Grainyhead 1 acts as a drug-inducible conserved transcriptional regulator linked to insulin signaling and lifespan
Q104572689	Granulocyte-Colony Stimulating Factor reduces cocaine-seeking and downregulates glutamatergic synaptic proteins in medial prefrontal cortex
Q98902832	Growth Factor Receptor Signaling Inhibition Prevents SARS-CoV-2 Replication
Q95601530	Growth factor receptor signaling inhibition prevents SARS-CoV-2 replication
Q102984331	Growth hormone receptor knockout to reduce the size of donor pigs for preclinical xenotransplantation studies
Q100514098	Growth media selection alters the proteome profiles of three model microorganisms
Q112302175	Gut Commensal Bacteroidetes Encode a Novel Class of Vitamin B₁₂-Binding Proteins
Q90956458	H-Ras activation and fibroblast-induced TGF-β signaling promote laminin-332 accumulation and invasion in cutaneous squamous cell carcinoma
Q100526363	H3K4me2 regulates the recovery of protein biosynthesis and homeostasis following DNA damage
Q112301091	HDLBP binds ER-targeted mRNAs by multivalent interactions to promote protein synthesis of transmembrane and secreted proteins
Q98513545	HIF-1α and HIF-2α differently regulate tumour development and inflammation of clear cell renal cell carcinoma in mice
Q112570063	HLA-A*11:01-restricted CD8+ T cell immunity against influenza A and influenza B viruses in Indigenous and non-Indigenous people
Q93064128	HSP60-regulated Mitochondrial Proteostasis and Protein Translation Promote Tumor Growth of Ovarian Cancer
Q101568101	HYpro16: A Two-Proteome Mixture to Assess Interference in Isobaric Tag-Based Sample Multiplexing Experiments
Q112711906	Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period
Q115673350	Harnessing Machine Learning To Unravel Protein Degradation in Escherichia coli
Q104516275	Harnessing the power of electrophoresis and chromatography: Offline coupling of reverse phase liquid chromatography-capillary zone electrophoresis-tandem mass spectrometry for analysis of host cell proteins in monoclonal antibody producing CHO cell
Q89734124	Harnessing the power of electrophoresis and chromatography: Offline coupling of reverse phase liquid chromatography-capillary zone electrophoresis-tandem mass spectrometry for peptide mapping for monoclonal antibodies
Q89814627	Hat1-Dependent Lysine Acetylation Targets Diverse Cellular Functions
Q99604465	HcFAR, a functional inhibitor of goat TGF-β1 identified from excretory and secretory products of Haemonchus contortus
Q112304342	Heading towards a dead end: The role of DND1 in germ line differentiation of human iPSCs
Q101235084	Heat Stress Triggers Differential Protein Accumulation in the Extracellular Matrix of Sorghum Cell Suspension Cultures
Q112305646	Heat Stress-Dependent Association of Membrane Trafficking Proteins With mRNPs Is Selective
Q92321105	Heat-induced hyperthermia impacts the follicular fluid proteome of the periovulatory follicle in lactating dairy cows
Q92094401	Hemocyte phagosomal proteome is dynamically shaped by cytoskeleton remodeling and interorganellar communication with endoplasmic reticulum during phagocytosis in a marine invertebrate, Crassostrea gigas
Q99590098	Hepatic FTO is dispensable for the regulation of metabolism but counteracts HCC development in vivo
Q83547445	Hepatic proteomic analysis of selenoprotein F knockout mice by iTRAQ: An implication for the roles of selenoprotein F in metabolism and diseases
Q103787861	Hepatitis B Core Protein Is Post-Translationally Modified through K29-Linked Ubiquitination
Q94560507	Heterogeneity of proteome dynamics between connective tissue phases of adult tendon
Q124002744	Heterogeneity of proteome dynamics between connective tissue phases of adult tendon
Q112301756	Hidden information on protein function in censuses of proteome foldedness
Q91873283	High CD206 levels in Hodgkin lymphoma-educated macrophages are linked to matrix-remodeling and lymphoma dissemination
Q120670770	High levels of TFAM repress mammalian mitochondrial DNA transcription in vivo
Q114872795	High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development
Q64215098	High throughput LC-MS/MS-based proteomic analysis of excretory-secretory products from short-term in vitro culture of Haemonchus contortus
Q107562098	High-Efficient Production of Adipose-Derived Stem Cell (ADSC) Secretome Through Maturation Process and Its Non-scarring Wound Healing Applications
Q91331698	High-Throughput Quantitative Top-Down Proteomics: Histone H4
Q93137325	High-throughput Exploration of the Network Dependent on AKT1 in Mouse Ovarian Granulosa Cells
Q112303747	Highly flexible metabolism of the marine euglenozoan protist Diplonema papillatum
Q90065014	Histone H4 dosage modulates DNA damage response in the pathogenic yeast Candida glabrata via homologous recombination pathway
Q112644245	Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes
Q99205921	Histone chaperone FACT represses retrotransposon MERVL and MERVL-derived cryptic promoters
Q112313724	Histone modifications during the life cycle of the brown alga Ectocarpus
Q90170530	Histone variant H3.3 residue S31 is essential for Xenopus gastrulation regardless of the deposition pathway
Q96609448	Holistic engineering of cell-free systems through proteome-reprogramming synthetic circuits
Q98951532	Homozygous expression of the myofibrillar myopathy-associated p.W2710X filamin C variant reveals major pathomechanisms of sarcomeric lesion formation
Q111264275	Host apoplastic cysteine protease activity is suppressed during the mutualistic association of Lolium perenne and Epichloë festucae
Q98771695	Host-Defense Peptides Caerin 1.1 and 1.9 Stimulate TNF-Alpha-Dependent Apoptotic Signals in Human Cervical Cancer HeLa Cells
Q108878482	Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process
Q108878485	Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process
Q89494934	How to Cope With Heavy Metal Ions: Cellular and Proteome-Level Stress Response to Divalent Copper and Nickel in Halobacterium salinarum R1 Planktonic and Biofilm Cells
Q98383754	How to Illuminate the Dark Proteome Using the Multi-omic OpenProt Resource
Q112295067	Human Bone Proteomes before and after Decomposition: Investigating the Effects of Biological Variation and Taphonomic Alteration on Bone Protein Profiles and the Implications for Forensic Proteomics
Q93194550	Human Herpesvirus-6 Reactivation, Mitochondrial Fragmentation, and the Coordination of Antiviral and Metabolic Phenotypes in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome
Q112312825	Human METTL18 is a histidine-specific methyltransferase that targets RPL3 and affects ribosome biogenesis and function
Q89674054	Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation
Q90625756	Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.
Q90719700	Human and Nonhuman Primate Lineage-Specific Footprints in the Salivary Proteome
Q91813198	Human colon organoids reveal distinct physiologic and oncogenic Wnt responses
Q112293300	Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins
Q112301951	Humanized mice reveal a macrophage-enriched gene signature defining human lung tissue protection during SARS-CoV-2 infection
Q98297479	Hunting monolignol transporters: membrane proteomics and biochemical transport assays with membrane vesicles of Norway spruce
Q123301149	Hybrid QconCAT-Based Targeted Absolute and Data-Independent Acquisition-Based Label-Free Quantification Enables In-Depth Proteomic Characterization of Wheat Amylase/Trypsin Inhibitor Extracts
Q112650769	Hybridization-proximity labeling reveals spatially ordered interactions of nuclear RNA compartments
Q104104547	Hydrogen Deuterium Exchange Mass Spectrometry identifies the dominant paratope in CD20 antigen binding to the NCD1.2 monoclonal antibody
Q112640973	Hyperinflammatory environment drives dysfunctional myeloid cell effector response to bacterial challenge in COVID-19
Q112301863	Hyperosmolality in CHO cell culture: effects on the proteome
Q112279307	Hypoxia Is a Dominant Remodeler of the Effector T Cell Surface Proteome Relative to Activation and Regulatory T Cell Suppression
Q104286519	Hypoxia and HIF-1α regulate endoplasmic reticulum (ER) stress in nucleus pulposus cells: Implications of ER stress for extracellular matrix secretion
Q95838116	IGF-1 receptor activity in the Golgi of migratory cancer cells depends on adhesion-dependent phosphorylation of Tyr1250 and Tyr1251
Q112305581	IL-15 and PIM kinases direct the metabolic programming of intestinal intraepithelial lymphocytes
Q90592153	IL-23 signaling regulation of pro-inflammatory T-cell migration uncovered by phosphoproteomics
Q89495085	IL8 and PMA Trigger the Regulation of Different Biological Processes in Granulocyte Activation
Q95650402	INSTRUMENT LOGIC INCREASES IDENTIFICATIONS DURING MUTLIPLEXED TRANSLATOME MEASUREMENTS
Q97538873	INTS10-INTS13-INTS14 form a functional module of Integrator that binds nucleic acids and the cleavage module
Q112651329	ITRAQ-based quantitative proteomic analysis reveals that VPS35 promotes the expression of MCM2-7 genes in HeLa cells
Q91565309	ITRAQ-based quantitative proteomics reveals the first proteome profiles of piglets infected with porcine circovirus type 3
Q112305268	IceR improves proteome coverage and data completeness in global and single-cell proteomics
Q104748629	Identification and Characterization of Plant-Interacting Targets of Tomato Spotted Wilt Virus Silencing Suppressor
Q112642969	Identification and drug-induced reversion of molecular signatures of Alzheimer's disease onset and progression in App^NL-G-F, App^NL-F, and 3xTg-AD mouse models
Q97438417	Identification and validation of differential plasma proteins levels in epithelial ovarian cancer
Q112304981	Identification of Allobaculum mucolyticum as a novel human intestinal mucin degrader
Q112710505	Identification of Antimicrobial Peptides Isolated From the Skin Mucus of African Catfish, Clarias gariepinus (Burchell, 1822)
Q102330457	Identification of Blood-Brain Barrier-Associated Proteins in the Human Brain
Q112291880	Identification of COVID-19 prognostic markers and therapeutic targets through meta-analysis and validation of Omics data from nasopharyngeal samples
Q64061185	Identification of ChIP-seq and RIME grade antibodies for Estrogen Receptor alpha
Q92608371	Identification of Chloroplast Envelope Proteins with Critical Importance for Cold Acclimation
Q104610591	Identification of Deamidated Peptides in Cytokine-Exposed MIN6 Cells through LC-MS/MS Using a Shortened Digestion Time and Inspection of MS2 Spectra
Q112303995	Identification of Desmoglein-2 as a novel target of Helicobacter pylori HtrA in epithelial cells
Q112304322	Identification of Differential Responses of Goat PBMCs to PPRV Virulence Using a Multi-Omics Approach
Q104112104	Identification of Evolutionarily Conserved Nuclear Matrix Proteins and Their Prokaryotic Origins
Q112286735	Identification of Full-Length Wild-Type and Mutant Huntingtin Interacting Proteins by Crosslinking Immunoprecipitation in Mice Brain Cortex
Q92206244	Identification of HCMV-derived T cell epitopes in seropositive individuals through viral deletion models
Q112640931	Identification of HnRNPC as a novel Tau exon 10 splicing factor using RNA antisense purification mass spectrometry
Q90027608	Identification of Key Pro-Survival Proteins in Isolated Colonic Goblet Cells of Winnie, a Murine Model of Spontaneous Colitis
Q89930021	Identification of Novel Prognosis and Prediction Markers in Advanced Prostate Cancer Tissues Based on Quantitative Proteomics
Q93129647	Identification of PKCα-dependent phosphoproteins in mouse retina
Q113207477	Identification of Proteases and Protease Inhibitors in Seeds of the Recalcitrant Forest Tree Species Quercus ilex
Q111442219	Identification of SUMO Targets Associated With the Pluripotent State in Human Stem Cells
Q96134610	Identification of TUBB2A by quantitative proteomic analysis as a novel biomarker for the prediction of distant metastatic breast cancer
Q106667299	Identification of a Proteomic Signature of Senescence in Primary Human Mammary Epithelial Cells
Q112301121	Identification of allergenomic signatures in allergic and well-tolerated apple genotypes using LC-MS/MS
Q112303594	Identification of cerebrospinal fluid biomarkers for parkinsonism using a proteomics approach
Q112312748	Identification of disease-promoting stromal components by comparative proteomic and transcriptomic profiling of canine mammary tumors using laser-capture microdissected FFPE tissue
Q112302515	Identification of distinct cytotoxic granules as the origin of supramolecular attack particles in T lymphocytes
Q100762000	Identification of drivers of breast cancer invasion by secretome analysis: insight into CTGF signaling
Q92758663	Identification of dual histone modification-binding protein interaction by combining mass spectrometry and isothermal titration calorimetric analysis
Q98162023	Identification of flucloxacillin-haptenated HLA-B*57:01 ligands: evidence of antigen processing and presentation
Q97533090	Identification of host factors limiting the overexpression of recombinant Cu, Zn superoxide dismutase in Escherichia coli
Q91817094	Identification of immune-related proteins of Dreissena polymorpha hemocytes and plasma involved in host-microbe interactions by differential proteomics
Q94599282	Identification of novel glycosylation events on human serum-derived factor IX
Q95823580	Identification of novel interacting partners of the NEDD4 ubiquitin ligase in mouse testis
Q104691451	Identification of novel protein-coding sequences in Eucalyptus grandis plants by high-resolution mass spectrometry
Q112284028	Identification of novel proteins and mechanistic pathways associated with early-onset hypertension by deep proteomic mapping of resistance arteries
Q89839781	Identification of osteolineage cell-derived extracellular vesicle cargo implicated in hematopoietic support
Q108768613	Identification of permissive amber suppression sites for efficient non-canonical amino acid incorporation in mammalian cells
Q91718301	Identification of potential chemosignals in the European water vole Arvicola terrestris
Q90133800	Identification of proteins and miRNAs that specifically bind an mRNA in vivo
Q89763810	Identification of proteins from the secretory/excretory products (SEPs) of the branchiuran ectoparasite Argulus foliaceus (Linnaeus, 1758) reveals unique secreted proteins amongst haematophagous ecdysozoa
Q93176605	Identification of proteins in the adhesive trails of the diatom Amphora coffeaeformis
Q112305405	Identification of response signatures for tankyrase inhibitor treatment in tumor cell lines
Q97423695	Identification of targets of AMPylating Fic enzymes by co-substrate-mediated covalent capture
Q112283957	Identification of the Host Substratome of Leishmania-Secreted Casein Kinase 1 Using a SILAC-Based Quantitative Mass Spectrometry Assay
Q101470095	Identification of tissue-dependent proteins in knee OA synovial fluid
Q95831213	Identification of tumor antigens in the HLA peptidome of patient-derived xenograft tumors in mouse
Q101059944	Identification-Free Control over the Precursor Isotopic Mass Misassignment in Orbitrap-Based Proteomics
Q91755047	Identifying Sialylation Linkages at the Glycopeptide Level by Glycosyltransferase Labeling Assisted Mass Spectrometry (GLAMS)
Q92784351	Identifying drug targets in tissues and whole blood with thermal-shift profiling
Q91949190	Identifying nucleic acid-associated proteins in Mycobacterium smegmatis by mass spectrometry-based proteomics
Q99346305	IgE Effector Mechanisms, in Concert with Mast Cells, Contribute to Acquired Host Defense against Staphylococcusaureus
Q89864975	Imipridone Anticancer Compounds Ectopically Activate the ClpP Protease and Represent a New Scaffold for Antibiotic Development
Q90803965	Immediate adaptation analysis implicates BCL6 as an EGFR-TKI combination therapy target in NSCLC
Q112710432	Immunopeptidogenomics: Harnessing RNA-Seq to Illuminate the Dark Immunopeptidome
Q112640605	Immunopeptidomic analyses of colorectal cancers with and without microsatellite instability
Q125341046	Immunopeptidomics-based design of mRNA vaccine formulations against Listeria monocytogenes
Q96681615	Immunoreactive Proteins in the Esophageal Gland Cells of Anisakis Simplex Sensu Stricto Detected by MALDI-TOF/TOF Analysis
Q98575539	Immunostimulation by Lactobacillus kefiri S-layer proteins with distinct glycosylation patterns requires different lectin partners
Q97067508	Impact of Different Trace Elements on the Growth and Proteome of Two Strains of Granulicella, Class "Acidobacteriia"
Q94603198	Impact of Increased FUT8 Expression on the Extracellular Vesicle Proteome in Prostate Cancer Cells
Q112313479	Impact of WIN site inhibitor on the WDR5 interactome
Q112304697	Impact of alanyl-tRNA synthetase editing deficiency in yeast
Q92848534	Impact of an Antifungal Insect Defensin on the Proteome of the Phytopathogenic Fungus Botrytis cinerea
Q112300921	Impact of p53 knockdown on protein dataset of HaCaT cells
Q93083313	Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency
Q90281809	Impact of the gut microbiota on the m6A epitranscriptome of mouse cecum and liver
Q112287939	Impacts of Ser/Thr Protein Kinase Stk1 on the Proteome, Twitching Motility, and Competitive Advantage in Pseudomonas aeruginosa
Q112294639	Impairment of the ER/mitochondria compartment in human cardiomyocytes with PLN p.Arg14del mutation
Q112806632	Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
Q90695143	Improved Nanoflow RPLC-CZE-MS/MS System with High Peak Capacity and Sensitivity for Nanogram Bottom-up Proteomics
Q100544936	Improved Sensitivity of Ultralow Flow LC-MS-Based Proteomic Profiling of Limited Samples Using Monolithic Capillary Columns and FAIMS Technology
Q92489742	Improved Single-Cell Proteome Coverage Using Narrow-Bore Packed NanoLC Columns and Ultrasensitive Mass Spectrometry
Q89685502	Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker
Q91350139	In Situ Structural Restraints from Cross-Linking Mass Spectrometry in Human Mitochondria
Q112714088	In Stallion Spermatozoa, Superoxide Dismutase (Cu-Zn) (SOD1) and the Aldo-Keto-Reductase Family 1 Member b (AKR1B1) Are the Proteins Most Significantly Reduced by Cryopreservation
Q91877321	In Vivo Trapping of Proteins Interacting with the Chloroplast CLPC1 Chaperone: Potential Substrates and Adaptors
Q83231035	In vivo identification of GTPase interactors by mitochondrial relocalization and proximity biotinylation
Q112279801	In-Depth Matrisome and Glycoproteomic Analysis of Human Brain Glioblastoma Versus Control Tissue
Q92101217	In-Depth, Proteomic Analysis of Nasal Secretions from Patients With Chronic Rhinosinusitis and Nasal Polyps
Q109649678	In-House Packed Porous Graphitic Carbon Columns for Liquid Chromatography-Mass Spectrometry Analysis of Glycans
Q107404383	In-depth blood proteome profiling analysis revealed distinct functional characteristics of plasma proteins between severe and non-severe COVID-19 patients
Q114379654	In-depth characterization revealed polymer type and chemical content specific effects of microplastic on Dreissena bugensis
Q94591200	In-depth mining of the immunopeptidome of an acute myeloid leukemia cell line using complementary ligand enrichment and data acquisition strategies
Q90371963	In-depth proteome analysis of more than 12,500 proteins in buffalo mammary epithelial cell line identifies protein signatures for active proliferation and lactation
Q98508205	In-depth quantitative proteomics uncovers specie-specific metabolic programs in Leishmania (Viannia) species
Q114061067	Increased CSF-decorin predicts brain pathological changes driven by Alzheimer’s Aβ amyloidosis
Q112305982	Increased Wheat Protein Content via Introgression of an HMW Glutenin Selectively Reshapes the Grain Proteome
Q96127685	Increased immunocompetence and network centrality of allogroomer workers suggest a link between individual and social immunity in honeybees
Q112609296	Increased levels of mitochondrial import factor Mia40 prevent the aggregation of polyQ proteins in the cytosol
Q112302229	Indisulam targets RNA splicing and metabolism to serve as a therapeutic strategy for high-risk neuroblastoma
Q92800661	Indoxyl Sulfate and p-Cresyl Sulfate Promote Vascular Calcification and Associate with Glucose Intolerance
Q89720851	Inference of Multisite Phosphorylation Rate Constants and Their Modulation by Pathogenic Mutations
Q112292724	Inference of kinase-signaling networks in human myeloid cell line models by Phosphoproteomics using kinase activity enrichment analysis (KAEA)
Q112312772	Influence of Proteome Profiles and Intracellular Drug Exposure on Differences in CYP Activity in Donor-Matched Human Liver Microsomes and Hepatocytes
Q112289085	Influenza A H1N1 Induced Disturbance of the Respiratory and Fecal Microbiome of German Landrace Pigs - a Multi-Omics Characterization
Q94551707	Inhibition of Hsp90 in the spinal cord enhances the antinociceptive effects of morphine by activating an ERK-RSK pathway
Q92079576	Inhibition of bacterial ubiquitin ligases by SidJ-calmodulin catalysed glutamylation
Q92092674	Inhibition of collagen XI alpha 1-induced fatty acid oxidation triggers apoptotic cell death in cisplatin-resistant ovarian cancer
Q64895040	Inhibition of mPGES-1 or COX-2 Results in Different Proteomic and Lipidomic Profiles in A549 Lung Cancer Cells.
Q112697973	Innovative in Silico Approaches for Characterization of Genes and Proteins
Q123095442	Inositol Signaling in the Basidiomycete Fungus Schizophyllum commune
Q89852992	Insight about cell wall remodulation triggered by rifampicin in Mycobacterium tuberculosis
Q90808771	Insight into the Structure of the "Unstructured" Tau Protein
Q98390125	Insights into Biomechanical and Proteomic Characteristics of Small Diameter Vascular Grafts Utilizing the Human Umbilical Artery
Q92906598	Insights into Early Recovery from Influenza Pneumonia by Spatial and Temporal Quantification of Putative Lung Regenerating Cells and by Lung Proteomics
Q94550105	Insights into herpesvirus assembly from the structure of the pUL7:pUL51 complex
Q108768861	Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea
Q89697268	Insights into the Functions of eIF4E-Biding Motif of VPg in Potato Virus A Infection
Q97535448	Insights into the Hematopoietic Regulatory Activities of Osteoblast by Secretomics
Q92418581	Intact Transition Epitope Mapping - Targeted High-Energy Rupture of Extracted Epitopes (ITEM-THREE).
Q91091318	Intact Transition Epitope Mapping - Thermodynamic Weak-force Order (ITEM - TWO)
Q112280685	Integrated Liver and Plasma Proteomics in Obese Mice Reveals Complex Metabolic Regulation
Q102073113	Integrated Proteomic and Metabolomic Profiling of Phytophthora cinnamomi Attack on Sweet Chestnut (Castanea sativa) Reveals Distinct Molecular Reprogramming Proximal to the Infection Site and Away from It
Q112284598	Integrated Redox Proteomic Analysis Highlights New Mechanisms of Sensitivity to Silver Nanoparticles
Q99557040	Integrated glycoproteomics identifies a role of N-glycosylation and galectin-1 on myogenesis and muscle development
Q112694017	Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction
Q112304884	Integrated multiomics analysis identifies molecular landscape perturbations during hyperammonemia in skeletal muscle and myotubes
Q90207660	Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes
Q113308504	Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues
Q102328708	Integrating Top-Down and Bottom-Up Mass Spectrometric Strategies for Proteomic Profiling of Iranian Saw-Scaled Viper, Echis carinatus sochureki, Venom
Q92362129	Integration of Metabolomics and Transcriptomics To Reveal Metabolic Characteristics and Key Targets Associated with Cisplatin Resistance in Nonsmall Cell Lung Cancer
Q99572022	Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes
Q90760630	Integrative -omics and HLA-ligandomics analysis to identify novel drug targets for ccRCC immunotherapy
Q94502693	Integrative Proteome and Acetylome Analyses of Murine Responses to Cryptococcus neoformans Infection
Q92013425	Integrative Proteomic Analysis of Digestive Tract Glycosidases from the Invasive Golden Apple Snail, Pomacea canaliculata
Q112311566	Integrative Proteomic and Metabolomic Analysis Reveals Metabolic Phenotype in Mice With Cardiac-Specific Deletion of Natriuretic Peptide Receptor A
Q112305760	Integrative functional genomic analysis of intron retention in human and mouse brain with Alzheimer's disease
Q112302355	Integrative omics reveals subtle molecular perturbations following ischemic conditioning in a porcine kidney transplant model
Q112284711	Integrative proteo-transcriptomic and immunophenotyping signatures of HIV-1 elite control phenotype: A cross-talk between glycolysis and HIF signaling
Q112288452	Integrative proteome analysis implicates aberrant RNA splicing in impaired developmental potential of aged mouse oocytes
Q91806539	Integrative proteomics reveals an increase in non-degradative ubiquitylation in activated CD4+ T cells
Q104463987	Integrative vectors for regulated expression of SARS-CoV-2 proteins implicated in RNA metabolism
Q112582672	Integrin intra-heterodimer affinity inversely correlates with integrin activatability
Q95853316	Inter- and Intra-Molecular Interactions of The Arabidopsis Plasma Membrane Proton Pump Revealed Using a Mass Spectrometric-Cleavable Crosslinker
Q94483980	Inter-domain dynamics in the chaperone SurA and multi-site binding to its outer membrane protein clients
Q96961858	Interaction mapping of endoplasmic reticulum ubiquitin ligases identifies modulators of innate immune signalling
Q112313355	Interaction of 7SK with the Smn complex modulates snRNP production
Q112302301	Interaction of transcription factor FoxO3 with histone acetyltransferase complex subunit TRRAP modulates gene expression and apoptosis
Q89728851	Interactive proteogenomic exploration of response to Fusarium head blight in oat varieties with different resistance
Q112571342	Interactome Analysis of Human Phospholipase D and Phosphatidic Acid-Associated Protein Network
Q112289158	Interactome Networks of FOSL1 and FOSL2 in Human Th17 Cells
Q89881985	Interactome of vertebrate GAF/ThPOK reveals its diverse functions in gene regulation and DNA repair
Q112306153	Interferon-induced degradation of the persistent hepatitis B virus cccDNA form depends on ISG20
Q114054191	Intermittent bulk release of human cytomegalovirus
Q90724846	Interplay of Ubiquitin-Like Modifiers Following Arsenic Trioxide Treatment
Q112636054	Interval-Based Secretomics Unravels Acute-Phase Response in Hepatocyte Model Systems
Q91678411	Intestinal response to dietary manganese depletion in Drosophila
Q112215811	Intra-Tumor Heterogeneity Revealed by Mass Spectrometry Imaging Is Associated with the Prognosis of Breast Cancer
Q104132724	Intronic tRNAs of mitochondrial origin regulate constitutive and alternative splicing
Q90856552	Invariable stoichiometry of ribosomal proteins in mouse brain tissues with aging
Q92875661	Investigation of Oligodendrocyte Precursor Cell Differentiation by Quantitative Proteomics
Q112302382	Inward Outward Signaling in Ovarian Cancer: Morpho-Phospho-Proteomic Profiling Upon Application of Hypoxia and Shear Stress Characterizes the Adaptive Plasticity of OVCAR-3 and SKOV-3 Cells
Q112305387	In vitro reconstitution of Sgk3 activation by phosphatidylinositol 3-phosphate
Q101125219	Irgm2 and Gate-16 cooperatively dampen Gram-negative bacteria-induced caspase-11 response
Q102376051	Is the Proteome of Bronchoalveolar Lavage Extracellular Vesicles a Marker of Advanced Lung Cancer?
Q100441138	Isobaric Tag-Based Protein Profiling Across Eight Human Cell lines Using High-Field Asymmetric Ion Mobility Spectrometry (FAIMS) and Real-Time Database Searching (RTS)
Q94587836	Isobaric labeling strategy utilizing 4-plex N,N-dimethyl leucine (DiLeu) tags reveals proteomic changes induced by chemotherapy in cerebrospinal fluid of children with B-cell acute lymphoblastic leukemia
Q99203371	Isobaric matching between runs and novel PSM-level normalization in MaxQuant strongly improve reporter ion-based quantification
Q90350519	Isoform-resolved correlation analysis between mRNA abundance regulation and protein level degradation
Q112306030	Isolation Method and Characterization of Outer Membranes Vesicles of Helicobacter pylori Grown in a Chemically Defined Medium
Q98718153	Isolation Window Optimization of Data-Independent Acquisition Using Predicted Libraries for Deep and Accurate Proteome Profiling
Q97411568	Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota
Q102065016	Isolation and Characterization of Multi-Protein Complexes Enriched in the K-Cl Co-transporter 2 From Brain Plasma Membranes
Q64080950	Isolation and mass spectrometry based hydroxyproline mapping of type II collagen derived from ear cartilage
Q95855995	Itch attenuates CD4 T cell proliferation in mice by limiting WBP2 protein stability
Q112293716	Jejunal mucosa proteomics unravel metabolic adaptive processes to mild chronic heat stress in dairy cows
Q112306958	Jiedu Tongluo Granules Ameliorates Post-stroke Depression Rat Model via Regulating NMDAR/BDNF Signaling Pathway
Q112301411	K27-linked ubiquitylation promotes p97 substrate processing and is essential for cell proliferation
Q125341597	KAT2-mediated acetylation switches the mode of PALB2 chromatin association to safeguard genome integrity
Q112707386	Kansl1 haploinsufficiency impairs autophagosome-lysosome fusion and links autophagic dysfunction with Koolen-de Vries syndrome in mice
Q112281904	Kidney organoids recapitulate human basement membrane assembly in health and disease
Q112307058	Kinetics of Abacavir-Induced Remodelling of the Major Histocompatibility Complex Class I Peptide Repertoire
Q112710966	L-bodies are RNA-protein condensates driving RNA localization in Xenopus oocytes
Q112309226	LC-MS/MS analysis of lesional and normally looking psoriatic skin reveals significant changes in protein metabolism and RNA processing
Q92045739	LC-MS/MS based comparative proteomics of floral nectars reveal different mechanisms involved in floral defense of Nicotiana spp., Petunia hybrida and Datura stramonium
Q112304707	LDIP cooperates with SEIPIN and LDAP to facilitate lipid droplet biogenesis in Arabidopsis
Q92358546	LINE-1 ORF2p expression is nearly imperceptible in human cancers
Q91432834	Label-Free Interactome Analysis Revealed an Essential Role of CUL3-KEAP1 Complex in Mediating the Ubiquitination and Degradation of PHD2
Q92188496	Label-Free Proteomic Approach to Study the Non-lethal Effects of Silver Nanoparticles on a Gut Bacterium
Q99610981	Label-Free Quantitative Phosphoproteomics Reveals Signaling Dynamics Involved in Embryogenic Competence Acquisition in Sugarcane
Q91998515	Label-Free Quantitative Proteomics versus Antibody-Based Assays to Measure Neutrophil-Derived Enzymes in Saliva
Q89701641	Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth
Q92858682	Lack of AKAP3 disrupts integrity of the subcellular structure and proteome of mouse sperm and causes male sterility
Q94545305	Lactonase Specificity Is Key to Quorum Quenching in Pseudomonas aeruginosa
Q112280975	Landscape of adenosine-to-inosine RNA recoding across human tissues
Q108784178	Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities
Q112303793	Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities
Q112643655	Large-Scale Protein and Phosphoprotein Profiling to Explore Potato Resistance Mechanisms to Spongospora subterranea Infection
Q112644302	Large-scale and high-resolution mass spectrometry-based proteomics profiling defines molecular subtypes of esophageal cancer for therapeutic targeting
Q114867717	Large‐scale tandem mass spectrum clustering using fast nearest neighbor searching
Q91739413	Larval Geoduck (Panopea generosa) Proteomic Response to Ciliates
Q96578190	Laser capture microdissection in combination with mass spectrometry: Approach to characterization of tissue-specific proteomes of Eudiplozoon nipponicum (Monogenea, Polyopisthocotylea)
Q112302134	Leveraging Parameter Dependencies in High-Field Asymmetric Waveform Ion-Mobility Spectrometry and Size Exclusion Chromatography for Proteome-wide Cross-Linking Mass Spectrometry
Q118561694	Leveraging big data bioinformatics approaches to extract knowledge from Staphylococcus aureus public omics data
Q112807767	Leveraging proteomics in orphan disease research: pitfalls and potential
Q91091325	Ligand-induced disorder-to-order transitions characterized by structural proteomics and molecular dynamics simulations
Q90101976	Ligandomes obtained from different HLA-class II-molecules are homologous for N- and C-terminal residues outside the peptide-binding cleft
Q98775812	Light spectra affect the in vitro shoot development of Cedrela fissilis Vell. (Meliaceae) by changing the protein profile and polyamine contents
Q112286142	Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks
Q100726555	Lineage-Specific Proteomic Signatures in the Mycobacterium tuberculosis Complex Reveal Differential Abundance of Proteins Involved in Virulence, DNA Repair, CRISPR-Cas, Bioenergetics and Lipid Metabolism
Q92131427	Lipid droplet-associated kinase STK25 regulates peroxisomal activity and metabolic stress response in steatotic liver
Q91877308	Lipid moieties of Mycoplasma pneumoniae lipoproteins are the causative factor of vaccine-enhanced disease
Q89531374	Listeria monocytogenes Exploits Mitochondrial Contact Site and Cristae Organizing System Complex Subunit Mic10 To Promote Mitochondrial Fragmentation and Cellular Infection
Q104289879	Litopenaeus vannamei Notch interacts with COP9 signalosome complex subunit 1 (CNS1) to negatively regulate the NF-κB pathway
Q112712713	Liver-Dependent Lung Remodeling during Systemic Inflammation Shapes Responses to Secondary Infection
Q112296711	LncRNA PRADX-mediated recruitment of PRC2/DDX5 complex suppresses UBXN1 expression and activates NF-κB activity, promoting tumorigenesis
Q112292684	LncRNA RCAT1 promotes tumor progression and metastasis via miR-214-5p/E2F2 axis in renal cell carcinoma
Q112301070	Localization of EccA₃ at the growing pole in Mycobacterium smegmatis
Q123238717	Loggerhead sea turtle Caretta caretta plasma biochemistry and proteome profile modulation during recovery
Q95832242	Lon Protease Is Important for Growth Under Stressful Conditions and Pathogenicity of the Phytopathogen, Bacterium Dickeya solani
Q95840142	Long non-coding RNA LASSIE regulates shear stress sensing and endothelial barrier function
Q96126362	Long noncoding RNA SAM promotes myoblast proliferation through stabilizing Sugt1 and facilitating kinetochore assembly
Q96604579	Long-Term Phenotypic and Proteomic Changes Following Vitrified Embryo Transfer in the Rabbit Model
Q112313623	Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer
Q122118246	Long-term subculture affects rooting competence via changes in the hormones and protein profiles in Cedrela fissilis Vell. (Meliaceae) shoots
Q104683856	Long-term transcriptomic and proteomic effects in Sprague Dawley rat thyroid and plasma after internal low dose 131I exposure
Q98734934	Longitudinal Stroke Recovery Associated With Dysregulation of Complement System-A Proteomics Pathway Analysis
Q112306032	Longitudinal proteomic profiling provides insights into host response and proteome dynamics in COVID-19 progression
Q112291647	Longitudinal stability of urinary extracellular vesicle protein patterns within and between individuals
Q90639228	Loss of the Periplasmic Chaperone Skp and Mutations in the Efflux Pump AcrAB-TolC Play a Role in Acquired Resistance to Antimicrobial Peptides in Salmonella typhimurium
Q112613844	Loss of α-actinin-3 during human evolution provides superior cold resilience and muscle heat generation
Q96117521	Low Doses of Arsenic in a Mouse Model of Human Exposure and in Neuronal Culture Lead to S-Nitrosylation of Synaptic Proteins and Apoptosis via Nitric Oxide
Q99632491	Lowering Sample Requirements to Study Tyrosine Kinase Signaling using Phosphoproteomics with the TMT Calibrator Approach
Q118164882	Lung macrophages utilize unique cathepsin K-dependent phagosomal machinery to degrade intracellular collagen
Q92229563	Lymphatic remodelling in response to lymphatic injury in the hind limbs of sheep
Q98890985	Lysine acetylation of F-actin decreases tropomyosin-based inhibition of actomyosin activity
Q104488453	Lysine in Combination With Estradiol Promote Dissemination of Estrogen Receptor Positive Breast Cancer via Upregulation of U2AF1 and RPN2 Proteins
Q112296905	MANTI: Automated Annotation of Protein N-Termini for Rapid Interpretation of N-Terminome Data Sets
Q92078756	MASTL promotes cell contractility and motility through kinase-independent signaling
Q99710868	MFSD7C switches mitochondrial ATP synthesis to thermogenesis in response to heme
Q98394158	MIC26 and MIC27 cooperate to regulate cardiolipin levels and the landscape of OXPHOS complexes
Q112283116	MITF activity is regulated by a direct interaction with RAF proteins in melanoma cells
Q112295827	MKRN3-mediated ubiquitination of Poly(A)-binding proteins modulates the stability and translation of GNRH1 mRNA in mammalian puberty
Q103812088	MS-Based in Situ Proteomics Reveals AMPylation of Host Proteins during Bacterial Infection
Q125344045	MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates
Q114034420	MStoCIRC: A powerful tool for downstream analysis of MS/MS data to predict translatable circRNAs
Q112314249	MX2-mediated innate immunity against HIV-1 is regulated by serine phosphorylation
Q91991868	MaXLinker: Proteome-wide Cross-link Identifications with High Specificity and Sensitivity
Q102972407	Machine Learning Analysis of the Cerebrovascular Thrombi Proteome in Human Ischemic Stroke: An Exploratory Study
Q104788789	Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis
Q109048682	Major antigen and paramyosin proteins as candidate biomarkers for serodiagnosis of canine infection by zoonotic Onchocerca lupi
Q104802871	Mammalian cell proliferation requires noncatalytic functions of O-GlcNAc transferase
Q90254618	Mapping Interactome Networks of DNAJC11, a Novel Mitochondrial Protein Causing Neuromuscular Pathology in Mice
Q99614268	Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation
Q112293082	Mapping Salivary Proteases in Sjögren's Syndrome Patients Reveals Overexpression of Dipeptidyl Peptidase-4/CD26
Q99350052	Mapping and identification of soft corona proteins at nanoparticles and their impact on cellular association
Q100693642	Mapping glycan-mediated galectin-3 interactions by live cell proximity labeling
Q112642416	Mapping protein carboxymethylation sites provides insights into their role in proteostasis and cell proliferation
Q112296844	Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen
Q112312303	Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells
Q114864676	Marine dissolved organic matter: a vast and unexplored molecular space
Q101214606	Marked Increased Production of Acute Phase Reactants by Skeletal Muscle during Cancer Cachexia
Q114653298	Mass Dynamics 1.0: A Streamlined, Web-Based Environment for Analyzing, Sharing, and Integrating Label-Free Data
Q104282580	Mass Spectral Analysis of Synthetic Peptides: Implications in Proteomics
Q100746873	Mass Spectrometric Analysis of Antibody-Epitope Peptide Complex Dissociation: Theoretical Concept and Practical Procedure of Binding Strength Characterization
Q96615433	Mass Spectrometric Identification of SARS-CoV-2 Proteins from Gargle Solution Samples of COVID-19 Patients
Q92058158	Mass Spectrometry Based Immunopeptidomics Leads to Robust Predictions of Phosphorylated HLA Class I Ligands
Q115653661	Mass Spectrometry Proteotyping-Based Detection and Identification of Staphylococcus aureus, Escherichia coli, and Candida albicans in Blood
Q104791771	Mass Spectrometry Spatial-Omics on a Single Conductive Slide
Q101133890	Mass Spectrometry-Based Abundance Atlas of ABC Transporters in Human Liver, Gut, Kidney, Brain, and Skin
Q96116023	Mass Spectrometry-Based Characterization of the Virion Proteome, Phosphoproteome, and Associated Kinase Activity of Human Cytomegalovirus
Q90407557	Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data
Q96121972	Mass spectrometric characterisation of the circulating peptidome following oral glucose ingestion in control and gastrectomised patients
Q99578364	Mass spectrometry characterization of light chain fragmentation sites in cardiac AL amyloidosis:insights into the timing of proteolysis
Q96609376	Mass spectrometry reveals the chemistry of formaldehyde cross-linking in structured proteins
Q98951494	Mass spectrometry-based analysis of formalin-fixed, paraffin-embedded distal cholangiocarcinoma identifies stromal thrombospondin-2 as a potential prognostic marker
Q115227890	Mass spectrometry-based identification and characterization of human hypothetical proteins highlighting the inconsistency across the protein databases
Q91822314	Mass spectrometry-based proteomic analysis of FSCN1-interacting proteins in laryngeal squamous cell carcinoma cells
Q99418896	MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets
Q96125536	Master Sculptor at Work: Enteropathogenic Escherichia coli Infection Uniquely Modifies Mitochondrial Proteolysis during Its Control of Human Cell Death
Q90501810	MatrisomeDB: the ECM-protein knowledge database
Q92034033	Matrix metalloproteinases inactivate the proinflammatory functions of secreted moonlighting tryptophanyl-tRNA synthetase
Q112292054	Matrix-assisted laser desorption ionization mass spectrometry profiling of plasma exosomes evaluates osteosarcoma metastasis
Q109649603	MaxDIA enables library-based and library-free data-independent acquisition proteomics
Q90204113	MaxQuant software for ion mobility enhanced shotgun proteomics
Q93178974	Mechanical Forces Regulate Cardiomyocyte Myofilament Maturation via the VCL-SSH1-CFL Axis
Q92860950	Mechanism of adrenergic CaV1.2 stimulation revealed by proximity proteomics
Q83230136	Mechanism of pharmacochaperoning in a mammalian K channel revealed by cryo-EM
Q92823577	Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1.
Q92997698	Mechanisms of innate events during skin reaction following intradermal injection of seasonal influenza vaccine
Q109296957	Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL substrate degradome
Q64903148	Mediator complex interaction partners organize the transcriptional network that defines neural stem cells.
Q125343283	Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization
Q90414193	Membrane Modulation of Super-Secreting "midiBacillus" Expressing the Major Staphylococcus aureus Antigen - A Mass-Spectrometry-Based Absolute Quantification Approach
Q90922880	Membrane associated proteins of two Trichomonas gallinae clones vary with the virulence
Q112312281	Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems
Q100384011	Memory-Enhancing Effects of Origanum majorana Essential Oil in an Alzheimer's Amyloid beta1-42 Rat Model: A Molecular and Behavioral Study
Q112709377	Mesh Fragmentation Improves Dissociation Efficiency in Top-down Proteomics
Q112305586	Meta-omics Reveal Gallionellaceae and Rhodanobacter Species as Interdependent Key Players for Fe(II) Oxidation and Nitrate Reduction in the Autotrophic Enrichment Culture KS
Q112304338	Meta-proteomic analysis of the Shandrin mammoth by EVA technology and high-resolution mass spectrometry: what is its gut microbiota telling us?
Q95840921	Metabolic Insights Into Infochemicals Induced Colony Formation and Flocculation in Scenedesmus subspicatus Unraveled by Quantitative Proteomics
Q90249884	Metabolic Rearrangements Causing Elevated Proline and Polyhydroxybutyrate Accumulation During the Osmotic Adaptation Response of Bacillus megaterium
Q97643603	Metabolic coessentiality mapping identifies C12orf49 as a regulator of SREBP processing and cholesterol metabolism
Q120717335	Metabolic control of nitrogen fixation in rhizobium-legume symbioses
Q112314166	Metabolic determination of cell fate through selective inheritance of mitochondria
Q100315965	Metabolic precision labeling enables selective probing of O-linked N-acetylgalactosamine glycosylation
Q90454332	Metabolic quirks and the colourful history of the Euglena gracilis secondary plastid
Q90911621	Metabolic regulation of gene expression by histone lactylation
Q91853627	Metabolic rewiring of the hypertensive kidney
Q93031892	Metabolic syndrome diminishes insulin-induced Akt activation and causes a redistribution of Akt-interacting proteins in cardiomyocytes
Q108591403	Metabolomic Identification of Anticancer Metabolites of Australian Propolis and Proteomic Elucidation of Its Synergistic Mechanisms with Doxorubicin in the MCF7 Cells
Q112304944	Metaproteomic Insights Into the Microbial Community in Pozol
Q112701522	Metaproteomic Profile of the Colonic Luminal Microbiota From Patients With Colon Cancer
Q91140304	Metaproteomic data of maize rhizosphere for deciphering functional diversity
Q125289491	Metaproteomic sample preparation methods bias the recovery of host and microbial proteins according to taxa and cellular compartment
Q112303611	Methanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds
Q112706911	Methyl-lysine readers PHF20 and PHF20L1 define two distinct gene expression-regulating NSL complexes
Q93216262	Methylation of Salmonella Typhimurium flagella promotes bacterial adhesion and host cell invasion
Q96951326	Methyltransferase-like 21C (METTL21C) methylates alanine tRNA synthetase at Lys-943 in muscle tissue
Q97890899	MiT/TFE factors control ER-phagy via transcriptional regulation of FAM134B
Q114580062	Micro-RNA and Proteomic Profiles of Plasma-Derived Exosomes from Irradiated Mice Reveal Molecular Changes Preventing Apoptosis in Neonatal Cerebellum
Q112308664	MicroPOTS Analysis of Barrett's Esophageal Cell Line Models Identifies Proteomic Changes after Physiologic and Radiation Stress
Q104802226	Microbe-Mineral Interaction and Novel Proteins for Iron Oxide Mineral Reduction in the Hyperthermophilic Crenarchaeon Pyrodictium delaneyi
Q112303106	Microbial enzymes induce colitis by reactivating triclosan in the mouse gastrointestinal tract
Q117715965	Microbial functional diversity across biogeochemical provinces in the central Pacific Ocean
Q112752677	Microfluidic device with brain extracellular matrix promotes structural and functional maturation of human brain organoids
Q114236218	Microscopic and biochemical monitoring of endosomal trafficking and extracellular vesicle secretion in an endogenous in vivo model
Q112642854	Migraine-Associated Mutation in the Na,K-ATPase Leads to Disturbances in Cardiac Metabolism and Reduced Cardiac Function
Q104134981	Mild hyperlipidemia in mice aggravates platelet responsiveness in thrombus formation and exploration of platelet proteome and lipidome
Q90440354	Mining for protein S-sulfenylation in Arabidopsis uncovers redox-sensitive sites
Q112300771	Mistargeting of aggregation prone mitochondrial proteins activates a nucleus-mediated posttranscriptional quality control pathway in trypanosomes
Q98162246	Mitochondria and Peroxisome Remodeling across Cytomegalovirus Infection Time Viewed through the Lens of Inter-ViSTA
Q96639708	Mitochondrial CLPP2 assists coordination and homeostasis of respiratory complexes
Q114689492	Mitochondrial Dysfunction in Rabies Virus-Infected Human and Canine Brains
Q112715663	Mitochondrial Impairment by MitoBloCK-6 Inhibits Liver Cancer Cell Proliferation
Q112313361	Mitochondrial Small Heat Shock Proteins Are Essential for Normal Growth of Arabidopsis thaliana
Q104129422	Mitochondrial Transcription Factor A Binds to and Promotes Mutagenic Transcriptional Bypass of O⁴-Alkylthymidine Lesions
Q112313756	Mitochondrial defects in the respiratory complex I contribute to impaired translational initiation via ROS and energy homeostasis in SMA motor neurons
Q98513715	Mitochondrial dysfunction caused by outer membrane vesicles from Gram-negative bacteria activates intrinsic apoptosis and inflammation
Q98506417	Mitochondrial fatty acid synthesis coordinates oxidative metabolism in mammalian mitochondria
Q102383815	MobiDB: intrinsically disordered proteins in 2021
Q112610125	Model-guided development of an evolutionarily stable yeast chassis
Q90250850	Modeling Protein Destiny in Developing Fruit
Q110698299	Modeling plasticity and dysplasia of pancreatic ductal organoids derived from human pluripotent stem cells
Q112568081	Modeling the CRL4A ligase complex to predict target protein ubiquitination induced by cereblon-recruiting PROTACs
Q112291479	Modern Acinetobacter baumannii clinical isolates replicate inside spacious vacuoles and egress from macrophages
Q90248664	Modification of the cyclopropyl moiety of abacavir provides insight into the structure activity relationship between HLA-B*57:01 binding and T-cell activation
Q112708199	Molecular Architecture of the Antiophidic Protein DM64 and its Binding Specificity to Myotoxin II From Bothrops asper Venom
Q94601897	Molecular Insights into the Architecture of the Human SMC5/6 Complex
Q101120140	Molecular architecture and domain arrangement of the placental malaria protein VAR2CSA suggests a model for carbohydrate binding
Q99235493	Molecular basis for the bifunctional Uba4-Urm1 sulfur-relay system in tRNA thiolation and ubiquitin-like conjugation
Q91122697	Molecular basis of senescence transmitting in the population of human endometrial stromal cells
Q112576720	Molecular characterization of hematopoietic stem cells after in vitro amplification on biomimetic 3D PDMS cell culture scaffolds
Q99613412	Molecular classification of the placebo effect in nausea
Q100378997	Molecular determinants of MED1 interaction with the DNA bound VDR-RXR heterodimer
Q102220569	Moniliella spathulata, an oil-degrading yeast, which promotes growth of barley in oil-polluted soil
Q101555852	Monohaloacetic Acids and Monohaloacetamides Attack Distinct Cellular Proteome Thiols
Q91472542	Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage
Q96767796	Moving pieces in a cellular puzzle: a cryptic peptide from the scorpion toxin Ts14 activates AKT and ERK signaling and decreases cardiac myocyte contractility via dephosphorylation of phospholamban
Q96644590	Moyamoya disease factor RNF213 is a giant E3 ligase with a dynein-like core and a distinct ubiquitin-transfer mechanism
Q96639800	MtcB, a member of the MttB superfamily from the human gut acetogen Eubacterium limosum, is a cobalamin-dependent carnitine demethylase
Q108126740	Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in
Q97548042	Multi-layered proteomic analyses decode compositional and functional effects of cancer mutations on kinase complexes
Q112289694	Multi-level inhibition of coronavirus replication by chemical ER stress
Q104437358	Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV
Q91971999	Multi-omic Characterization of the Mode of Action of a Potent New Antimalarial Compound, JPC-3210, Against Plasmodium falciparum
Q90391187	Multi-omic analysis of gametogenesis reveals a novel signature at the promoters and distal enhancers of active genes
Q112312532	Multi-omics analysis of early leaf development in Arabidopsis thaliana
Q114869114	Multi-omics study identifies novel signatures of DNA/RNA, amino acid, peptide, and lipid metabolism by simulated diabetes on coronary endothelial cells
Q112700444	Multiaspect Examinations of Possible Alternative Mappings of Identified Variant Peptides: A Case Study on the HEK293 Cell Line
Q92315966	Multifaceted Mass Spectrometric Investigation of Neuropeptide Changes in Atlantic Blue Crab, Callinectes sapidus, in Response to Low pH Stress
Q90281627	Multilayered Control of Protein Turnover by TORC1 and Atg1
Q91372548	Multilayered N-Glycoproteome Profiling Reveals Highly Heterogeneous and Dysregulated Protein N-Glycosylation Related to Alzheimer's Disease
Q112303320	Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation
Q107112050	Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV
Q91583937	Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis
Q112293983	Multiomic analysis of stretched osteocytes reveals processes and signalling linked to bone regeneration and cancer
Q112720519	Multiomic analysis of the Arabian camel (Camelus dromedarius) kidney reveals a role for cholesterol in water conservation
Q114867290	Multiomics Analysis Provides Insight into the Laboratory Evolution of Escherichia coli toward the Metabolic Usage of Fluorinated Indoles
Q90985332	Multiorgan Systems Study Reveals Igfbp7 as a Suppressor of Gluconeogenesis after Gastric Bypass Surgery
Q112277021	Multiphoton Microscopy Reveals DAPK1-Dependent Extracellular Matrix Remodeling in a Chorioallantoic Membrane (CAM) Model
Q92542934	Multiple Layers of Phospho-Regulation Coordinate Metabolism and the Cell Cycle in Budding Yeast
Q98621698	Multiple drug-induced stress responses inhibit formation of Escherichia coli biofilms
Q112309228	Multiple unbiased approaches identify oxidosqualene cyclase as the molecular target of a promising anti-leishmanial
Q112289202	Multiplexed drug-based selection and counterselection genetic manipulations in Drosophila
Q112304706	Multistep mechanism of G-quadruplex resolution during DNA replication
Q104073113	Multivalent lipid targeting by the calcium-independent C2A domain of synaptotagmin-like protein 4/ granuphilin
Q64059835	Murine obscurin and Obsl1 have functionally redundant roles in sarcolemmal integrity, sarcoplasmic reticulum organization, and muscle metabolism
Q92451225	Musashi interaction with poly(A)-binding protein is required for activation of target mRNA translation
Q92477617	Mutations in the Heterotopia Gene Eml1/EML1 Severely Disrupt the Formation of Primary Cilia
Q97435278	Mutations in the exocyst component EXOC2 cause severe defects in human brain development
Q91023876	N-WASP Control of LPAR1 Trafficking Establishes Response to Self-Generated LPA Gradients to Promote Pancreatic Cancer Cell Metastasis
Q96770632	N-glycomic profiling of colorectal cancer according to tumor stage and location
Q100749884	N-glycomic signature of stage II colorectal cancer and its association with the tumor microenvironment
Q112301866	N-glycosylation regulates MET processing and signaling
Q96230361	NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis
Q96292291	NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses
Q114066917	NCOA4-Mediated Ferritinophagy Is a Pancreatic Cancer Dependency via Maintenance of Iron Bioavailability for Iron–Sulfur Cluster Proteins
Q100566611	NEDD4L-mediated Merlin ubiquitination facilitates Hippo pathway activation
Q109116593	NEK1-mediated retromer trafficking promotes blood-brain barrier integrity by regulating glucose metabolism and RIPK1 activation
Q92131332	NIMA-related kinase 9-mediated phosphorylation of the microtubule-associated LC3B protein at Thr-50 suppresses selective autophagy of p62/sequestosome 1
Q112301965	NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation
Q90439996	NNAlign_MA; MHC Peptidome Deconvolution for Accurate MHC Binding Motif Characterization and Improved T-cell Epitope Predictions
Q112303721	NUDT2 initiates viral RNA degradation by removal of 5'-phosphates
Q112747670	Nano-structured myelin: new nanovesicles for targeted delivery to white matter and microglia, from brain-to-brain
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Q112303030	Nanoenviroments of the β-Subunit of L-Type Voltage-Gated Calcium Channels in Adult Cardiomyocytes
Q102142864	Natural Exogenous Antioxidant Defense against Changes in Human Skin Fibroblast Proteome Disturbed by UVA Radiation
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Q108768569	NeissLock provides an inducible protein anhydride for covalent targeting of endogenous proteins
Q112304089	Nemertean, Brachiopod, and Phoronid Neuropeptidomics Reveals Ancestral Spiralian Signaling Systems
Q120684736	Neoplastic signatures: Comparative proteomics of canine hepatobiliary neuroendocrine tumors to normal niche tissue
Q92223579	Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis
Q100523510	Neural cell adhesion molecule 1 is a novel autoantigen in membranous lupus nephritis
Q99576676	Neuronal Differentiation of LUHMES Cells Induces Substantial Changes of the Proteome
Q112305219	Neuronal Nsun2 deficiency produces tRNA epitranscriptomic alterations and proteomic shifts impacting synaptic signaling and behavior
Q112346409	Neuropathy-causing TRPV4 mutations disrupt TRPV4-RhoA interactions and impair neurite extension
Q100739930	Neuroretinal-Derived Caveolin-1 Promotes Endotoxin-Induced Inflammation in the Murine Retina
Q112313516	Neutrophil degranulation interconnects over-represented biological processes in atrial fibrillation
Q99916322	Never boring: Non-invasive palaeoproteomics of mummified human skin
Q110771288	New Proteomic Signatures to Distinguish Between Zika and Dengue Infections
Q112304528	Nhp2 is a reader of H2AQ105me and part of a network integrating metabolism with rRNA synthesis
Q114647636	Niche deconvolution of the glioblastoma proteome reveals a distinct infiltrative phenotype within the proneural transcriptomic subgroup
Q101565392	Nidogen 1-Enriched Extracellular Vesicles Facilitate Extrahepatic Metastasis of Liver Cancer by Activating Pulmonary Fibroblasts to Secrete Tumor Necrosis Factor Receptor 1
Q92807678	NifA is the master regulator of both nitrogenase systems in Rhodobacter capsulatus
Q92066242	Nitric oxide maintains endothelial redox homeostasis through PKM2 inhibition
Q92092696	Nitrogen limitation reveals large reserves in metabolic and translational capacities of yeast
Q97094412	No difference in the proteome of racially and geometrically classified scalp hair sample from a South African cohort: Preliminary findings
Q114883895	Non-Apoptotic Caspase Activity Preferentially Targets a Novel Consensus Sequence Associated With Cytoskeletal Proteins in the Developing Auditory Brainstem
Q91236266	Non-reversible tissue fixation retains extracellular vesicles for in situ imaging
Q91172982	Noncompetitive binding of PpiD and YidC to the SecYEG translocon expands the global view on the SecYEG interactome in Escherichia coli
Q94458340	Normal murine respiratory tract has its mucus concentrated in clouds based on the Muc5b mucin
Q99413150	Novel Amyloid-beta pathology C. elegans model reveals distinct neurons as seeds of pathogenicity
Q101166204	Novel Aza-podophyllotoxin derivative induces oxidative phosphorylation and cell death via AMPK activation in triple-negative breast cancer
Q104476926	Novel Broad-Spectrum Antiviral Inhibitors Targeting Host Factors Essential for Replication of Pathogenic RNA Viruses
Q112715030	Novel Corneal Protein Biomarker Candidates Reveal Iron Metabolic Disturbance in High Myopia Eyes
Q112313599	Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium
Q64268816	Novel Prognostic Markers in Triple-Negative Breast Cancer Discovered by MALDI-Mass Spectrometry Imaging
Q98950321	Novel Serine/Threonine-O-glycosylation with N-Acetylneuraminic acid and 3-Deoxy-D-manno-octulosonic acid by bacterial flagellin glycosyltransferases
Q97537837	Novel biomarkers in cats with congestive heart failure due to primary cardiomyopathy
Q111442137	Nrf2 activation reprograms macrophage intermediary metabolism and suppresses the type I interferon response
Q112641229	NuA4 and H2A.Z control environmental responses and autotrophic growth in Arabidopsis
Q98192776	NuRD subunit CHD4 regulates super-enhancer accessibility in Rhabdomyosarcoma and represents a general tumor dependency
Q112720012	Nuclear Phosphatidylinositol 3,4,5-Trisphosphate Interactome Uncovers an Enrichment in Nucleolar Proteins
Q96348612	Nuclear interacting SET domain protein 1 inactivation impairs GATA1-regulated erythroid differentiation and causes erythroleukemia
Q97529945	Nuclear moonlighting of cytosolic glyceraldehyde-3-phosphate dehydrogenase regulates Arabidopsis response to heat stress
Q89663719	Nucleolar localization of RAG1 modulates V(D)J recombination activity
Q99365322	Nucleoporin TPR is an integral component of the TREX-2 mRNA export pathway
Q112282283	Nucleoside-Modified mRNA Vaccines Protect IFNAR^-/- Mice against Crimean-Congo Hemorrhagic Fever Virus Infection
Q108126800	Nucleotide sugar biosynthesis occurs in the glycosomes of procyclic and bloodstream form Trypanosoma brucei
Q101237623	O-Pair Search with MetaMorpheus for O-glycopeptide characterization
Q92192216	ODF1, sperm flagelar protein is expressed in kidney collecting ducts of rats
Q112312858	OXPHOS deficiency activates global adaptation pathways to maintain mitochondrial membrane potential
Q104268365	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity
Q112301074	Off-target effects of the lysosomal acid lipase inhibitors Lalistat-1 and Lalistat-2 on neutral lipid hydrolases
Q112290916	Off-the-shelf proximity biotinylation for interaction proteomics
Q91856474	Olaparib based photo-affinity probes for PARP-1 detection in living cells
Q116206341	Old World Vipers—A Review about Snake Venom Proteomics of Viperinae and Their Variations
Q108591888	Omics Analysis of Blood-Responsive Regulon in Bordetella pertussis Identifies a Novel Essential T3SS Substrate
Q92421355	One-Pot Quantitative Top- and Middle-Down Analysis of GluC-Digested Histone H4
Q112702998	Online Nanoflow Two-Dimension Comprehensive Active Modulation Reversed Phase-Reversed Phase Liquid Chromatography High-Resolution Mass Spectrometry for Metaproteomics of Environmental and Microbiome Samples
Q114868908	Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2
Q96639231	Open database searching enables the identification and comparison of bacterial glycoproteomes without defining glycan compositions prior to searching
Q100693379	OpenPepXL: An open-source tool for sensitive identification of cross-linked peptides in XL-MS
Q114107496	Opening opportunities for Kd determination and screening of MHC peptide complexes
Q89636116	Opposing effects of polysulfides and thioredoxin on apoptosis through caspase persulfidation
Q97561252	Optical Interrogation of Sympathetic Neuronal Effects on Macroscopic Cardiomyocyte Network Dynamics
Q96160474	Optimal Dissociation Methods Differ for N- and O-glycopeptides
Q97520392	Optimisation of Sporosori Purification and Protein Extraction Techniques for the Biotrophic Protozoan Plant Pathogen Spongospora subterranea
Q96637949	Optimization of Method for Human Sex Determination Using Peptidome Analysis of Teeth Enamel from Teeth of Different Biological Generation, Archeological Age, and Degrees of Taphonomic Preservation
Q90755858	Optimization of Synovial Fluid Collection and Processing for NMR Metabolomics and LC-MS/MS Proteomics
Q99421532	Optimization of a Top-Down Proteomics Platform for Closely-Related Pathogenic Bacteria Discrimination
Q112290931	Optimization of a human milk-directed quantitative sIgA ELISA method substantiated by mass spectrometry
Q100382375	Optimization of label-free nano LC-MS/MS analysis of the placental proteome
Q98159790	Optimization of skeletal protein preparation for LC-MS/MS sequencing yields additional coral skeletal proteins in Stylophora pistillata
Q112282509	Optimization of small extracellular vesicle isolation from expressed prostatic secretions in urine for in-depth proteomic analysis
Q91680391	Optimized Workflow for Multiplexed Phosphorylation Analysis of TMT-Labeled Peptides Using High-Field Asymmetric Waveform Ion Mobility Spectrometry
Q90027537	Orally-administered outer-membrane vesicles from Helicobacter pylori reduce H. pylori infection via Th2-biased immune responses in mice
Q99201343	Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells
Q100993642	Ovarian Blood Sampling Identifies Junction Plakoglobin as a Novel Biomarker of Early Ovarian Cancer
Q115196097	Ovarian carcinoma immunoreactive antigen-like protein 2 (OCIAD2) is a novel complex III-specific assembly factor in mitochondria
Q112310861	Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology
Q95307541	Overcoming off-targets: Assessing western blot signals for Bcnt/Cfdp1, a tentative component of the chromatin remodeling complex
Q101409672	Overexpression of Macrophage-Inducible C-Type Lectin Mincle Aggravates Proinflammatory Responses to Streptococcus pneumoniae with Fatal Outcome in Mice
Q97521889	Overexpression of Sedoheptulose-1,7-Bisphosphatase Enhances Photosynthesis in Chlamydomonas reinhardtii and Has No Effect on the Abundance of Other Calvin-Benson Cycle Enzymes
Q112306100	Overexpression of human BAG3^P209L in mice causes restrictive cardiomyopathy
Q111225631	Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees
Q99363887	Oxidation of cytochrome 605 is the rate limiting step when Ferrimicrobium acidiphilum respires aerobically on soluble iron
Q112305680	Oxidative stress induces coordinated remodeling of RNA-enzyme interactions
Q97635538	Ozone-derived oxysterols impair lung macrophage phagocytosis via adduction of some phagocytosis receptors
Q101219548	PARP-1 activation after oxidative insult promotes energy stress-dependent phosphorylation of YAP1 and reduces cell viability
Q100739379	PASS-DIA: A Data-Independent Acquisition Approach for Discovery Studies
Q64057193	PFA ependymoma-associated protein EZHIP inhibits PRC2 activity through a H3 K27M-like mechanism
Q99727054	PFN2 and NAA80 cooperate to efficiently acetylate the N-terminus of actin
Q112304173	PIM1 phosphorylation of the androgen receptor and 14-3-3 ζ regulates gene transcription in prostate cancer
Q120500967	PIWI proteomics identifies Atari and Pasilla as piRNA biogenesis factors in Aedes mosquitoes
Q92716957	PPARβ/δ recruits NCOR and regulates transcription reinitiation of ANGPTL4
Q92740861	PPM1G forms a PPP-type phosphatase holoenzyme with B56δ that maintains adherens junction integrity
Q112293455	PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα
Q102152183	PRMT1 inhibition induces differentiation of colon cancer cells
Q112297899	PRMT5 inhibition disrupts splicing and stemness in glioblastoma
Q91763889	PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline
Q64891245	PTPN21 and Hook3 relieve KIF1C autoinhibition and activate intracellular transport.
Q98224885	PUB11-Dependent Ubiquitination of the Phospholipid Flippase ALA10 Modifies ALA10 Localization and Affects the Pool of Linolenic Phosphatidylcholine
Q94507760	PaACL silencing accelerates flower senescence and changes proteome to maintain metabolic homeostasis
Q112313017	Palaeoproteomics confirm earliest domesticated sheep in southern Africa ca. 2000 BP
Q98906750	Palaeoproteomics gives new insight into early southern African pastoralism
Q118841618	Palaeoproteomics guidelines to identify proteinaceous binders in artworks following the study of a 15th-century painting by Sandro Botticelli's workshop
Q115171814	Palm Oil-Rich Diet Affects Murine Liver Proteome and S-Palmitoylome
Q112713527	Palmdelphin Regulates Nuclear Resilience to Mechanical Stress in the Endothelium
Q112366139	Palmitoylation targets the calcineurin phosphatase to the phosphatidylinositol 4-kinase complex at the plasma membrane
Q96115989	Pan-Proteomic Analysis and Elucidation of Protein Abundance among the Closely Related Brucella Species, Brucella abortus and Brucella melitensis
Q112592757	Pan-cancer analysis of transcripts encoding novel open-reading frames (nORFs) and their potential biological functions
Q100421142	Pancreatic Tissue Proteomics Unveils Key Proteins, Pathways, and Networks Associated with Type 1 Diabetes
Q112306114	Papain-Like Cysteine Protease Gene Family in Fig (Ficus carica L.): Genome-Wide Analysis and Expression Patterns
Q112637195	Paracrine signalling between intestinal epithelial and tumour cells induces a regenerative programme
Q90171686	Paradoxical mitotic exit induced by a small molecule inhibitor of APC/CCdc20
Q98228954	Parallel Murine and Human Plaque Proteomics Reveals Pathways of Plaque Rupture
Q92144190	Partial loss of CFIm25 causes learning deficits and aberrant neuronal alternative polyadenylation
Q92183029	Pathogenic Bi-allelic Mutations in NDUFAF8 Cause Leigh Syndrome with an Isolated Complex I Deficiency
Q112577857	Pathway of Hsp70 interactions at the ribosome
Q112304837	Patient-specific iPSCs carrying an SFTPC mutation reveal the intrinsic alveolar epithelial dysfunction at the inception of interstitial lung disease
Q64283883	Pax3 cooperates with Ldb1 to direct local chromosome architecture during myogenic lineage specification
Q112760543	Pectin Induced Colony Expansion of Soil-Derived Flavobacterium Strains
Q114872490	People with HIV have higher percentages of circulating CCR5+ CD8+ T cells and lower percentages of CCR5+ regulatory T cells
Q104474053	PepS: An Innovative Microfluidic Device for Bedside Whole Blood Processing before Plasma Proteomics Analyses
Q104482795	Peptide Correlation Analysis (PeCorA) Reveals Differential Proteoform Regulation
Q104478189	Peptide-Based Identification of Phytophthora Isolates and Phytophthora Detection in Planta
Q89618306	Peptidomics Approaches for the Identification of Bioactive Molecules from Diaphorina citri
Q92090433	Peptidyl-Prolyl Isomerase ppiB Is Essential for Proteome Homeostasis and Virulence in Burkholderia pseudomallei
Q99236016	Peracylation coupled with tandem mass spectrometry for structural sequencing of sulfated glycosaminoglycan mixtures without depolymerization
Q104494871	Perilipin 5 S155 phosphorylation by PKA is required for the control of hepatic lipid metabolism and glycemic control
Q112283953	Peroxide Antimalarial Drugs Target Redox Homeostasis in Plasmodium falciparum Infected Red Blood Cells
Q112303344	Peroxiredoxin 6 protects irradiated cells from oxidative stress and shapes their senescence-associated cytokine landscape
Q112296884	Personalized Profiling Reveals Donor- and Lactation-Specific Trends in the Human Milk Proteome and Peptidome
Q112643662	Phagocytosis by stroma confounds coculture studies
Q90245451	Pharmacological induction of selective endoplasmic reticulum retention as a strategy for cancer therapy
Q91485541	Phase-Variable Glycosylation in Nontypeable Haemophilus influenzae
Q97684508	Phasin interactome reveals the interplay of PhaF with the polyhydroxyalkanoate transcriptional regulatory protein PhaD in Pseudomonas putida
Q91618217	Phenotypic proteomic profiling identifies a landscape of targets for circadian clock-modulating compounds
Q96682460	Phloem Exudate Protein Profiles during Drought and Recovery Reveal Abiotic Stress Responses in Tomato Vasculature
Q98718472	PhosphoShield: Improving Trypsin Digestion of Phosphoproteins by Shielding the Negatively Charged Phosphate Moiety
Q100762020	Phosphodiesterase 2A2 regulates mitochondria clearance through Parkin-dependent mitophagy
Q92689607	Phosphoproteome Analysis Reveals Estrogen-ER Pathway as a Modulator of mTOR Activity Via DEPTOR
Q101223621	Phosphoproteomic Analysis of Platelets in Severe Obesity Uncovers Platelet Reactivity and Signaling Pathways Alterations
Q97516691	Phosphoproteomic quantitation and causal analysis reveal pathways in GPVI/ITAM-mediated platelet activation programs
Q112304585	Phosphoproteomics Provides Novel Insights into the Response of Primary Acute Lymphoblastic Leukemia Cells to Microtubule Depolymerization in G1 Phase of the Cell Cycle
Q112277602	Phosphoproteomics Unravel HBV Triggered Rewiring of Host Phosphosignaling Events
Q95661022	Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C
Q104736595	Phosphoproteomics identify arachidonic-acid-regulated signal transduction pathways modulating macrophage functions with implications for ovarian cancer
Q91145929	Phosphoproteomics of Acute Cell Stressors Targeting Exercise Signaling Networks Reveal Drug Interactions Regulating Protein Secretion
Q102213326	Phosphoproteomics reveals novel modes of function and inter-relationships among PIKKs in response to genotoxic stress
Q98564939	Phosphorylation by Aurora B kinase regulates caspase-2 activity and function
Q99247689	Phosphorylation of Toxoplasma gondii Secreted Proteins during Acute and Chronic Stages of Infection
Q90028602	Phosphorylation of multiple proteins involved in ciliogenesis by Tau Tubulin kinase 2
Q98563888	Phosphorylation ratio determination in fresh-frozen and formalin-fixed paraffin-embedded tissue with targeted mass spectrometry
Q112304008	Phosphorylation regulates arginine-rich RNA-binding protein solubility and oligomerization
Q90154496	Phosphorylation switches protein disulfide isomerase activity to maintain proteostasis and attenuate ER stress
Q98575032	Phosphorylation-Dependent Assembly of a 14-3-3 Mediated Signaling Complex during Red Blood Cell Invasion by Plasmodium falciparum Merozoites
Q112577175	Photoactivatable ribonucleosides mark base-specific RNA-binding sites
Q90480214	Photoprotective Acclimation of the Arabidopsis thaliana Leaf Proteome to Fluctuating Light
Q112313382	Physiological and proteomic profiles of Trypanosoma brucei rhodesiense parasite isolated from suramin responsive and non-responsive HAT patients in Busoga, Uganda
Q112301543	Physiological substrates and ontogeny-specific expression of the ubiquitin ligases MARCH1 and MARCH8
Q97898213	Piggybacking on Classical Import and Other Non-Classical Mechanisms of Nuclear Import Appear Highly Prevalent within the Human Proteome
Q98201879	Pilot Evaluation of Two Fasciola hepatica Biomarkers for Supporting Triclabendazole (TCBZ) Efficacy Diagnostics
Q96637432	Pilot Multi-Omic Analysis of Human Bile from Benign and Malignant Biliary Strictures: A Machine-Learning Approach
Q90316585	Plant Raf-like kinases regulate the mRNA population upstream of ABA-unresponsive SnRK2 kinases under drought stress
Q112290819	Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network
Q112279030	Plasma Exosomal Proteomic Pattern of Epstein-Barr Virus-Associated Hemophagocytic Lymphohistiocytosis
Q112642580	Plasma Gradient of Soluble Urokinase-Type Plasminogen Activator Receptor Is Linked to Pathogenic Plasma Proteome and Immune Transcriptome and Stratifies Outcomes in Severe COVID-19
Q112648527	Plasma proteome changes linked to late phase response after inhaled allergen challenge in asthmatics
Q112303790	Plasma proteomic data in bipolar II disorders and major depressive disorders
Q91833260	Plasma proteomic profiles differ between European and North American myotid bats colonized by Pseudogymnoascus destructans
Q112302512	Plasma proteomics data from hibernating and active Scandinavian brown bears
Q94587844	Plasma-derived EV Phosphoproteomics through Chemical Affinity Purification
Q96126765	Plasma-derived extracellular vesicles from Plasmodium vivax patients signal spleen fibroblasts via NF-kB facilitating parasite cytoadherence
Q120349429	Plasmepsin X activates the PCRCR complex of Plasmodium falciparum by processing PfRh5 for erythrocyte invasion
Q90008883	Plasmodium chaperonin TRiC/CCT identified as a target of the antihistamine clemastine using parallel chemoproteomic strategy
Q92104085	Plasticity of nuclear and cytoplasmic stress responses of RNA-binding proteins
Q94600354	Platform independent protein-based cell-of-origin subtyping of diffuse large B-cell lymphoma in formalin-fixed paraffin-embedded tissue
Q92406860	Polar recruitment of RLD by LAZY1-like protein during gravity signaling in root branch angle control
Q92022710	Polarly Localized EccE1 Is Required for ESX-1 Function and Stabilization of ESX-1 Membrane Proteins in Mycobacterium tuberculosis
Q100527235	Pollen development in cotton (Gossypium hirsutum) is highly sensitive to heat exposure during the tetrad stage
Q112304696	Polo-like kinase 1 (Plk1) regulates DNA replication origin firing and interacts with Rif1 in Xenopus
Q95323651	PolySTest: Robust statistical testing of proteomics data with missing values improves detection of biologically relevant features
Q98951754	Polydisperse molecular architecture of connexin 26/30 heteromeric hemichannels revealed by AFM imaging
Q112304724	Polymorphic estrogen receptor binding site causes Cd2-dependent sex bias in the susceptibility to autoimmune diseases
Q112650161	Polypyrimidine tract binding proteins PTBP1 and PTBP2 interact with distinct proteins under splicing conditions
Q104071857	Post-Translational Modification Analysis of VDAC1 in ALS-SOD1 Model Cells Reveals Specific Asparagine and Glutamine Deamidation
Q104494899	Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential
Q89595346	Posttranslational Modifications Mediate the Structural Diversity of Tauopathy Strains
Q92121108	Potential Role of Circulating Endoglin in Hypertension via the Upregulated Expression of BMP4
Q112302598	Potential Role of Epithelial Endoplasmic Reticulum Stress and Anterior Gradient Protein 2 Homologue in Crohn's Disease Fibrosis
Q112724807	Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments
Q112645468	Preclinical Studies on Convalescent Human Immune Plasma-Derived Exosome: Omics and Antiviral Properties to SARS-CoV-2
Q89648293	Predicting Electrophoretic Mobility of Proteoforms for Large-Scale Top-Down Proteomics
Q93100661	Prediction and Consequences of Cofragmentation in Metaproteomics
Q91571184	Prediction of an Upper Limit for the Fraction of Interprotein Cross-Links in Large-Scale In Vivo Cross-Linking Studies
Q115017880	Predictive evolution of metabolic phenotypes using model‐designed environments
Q91018547	Predominant cleavage of proteins N-terminal to serines and threonines using scandium(III) triflate
Q112304791	Pregnancy is accompanied by larger high density lipoprotein particles and compositionally distinct subspecies
Q98470708	Premature Activation of Immune Transcription Programs in Autoimmune-Predisposed Mouse Embryonic Stem Cells and Blastocysts
Q102066476	Prenatal Endotoxin Exposure Induces Fetal and Neonatal Renal Inflammation via Innate and Th1 Immune Activation in Preterm Pigs
Q92278448	Pressure Cycling Technology Assisted Mass Spectrometric Quantification of Gingival Tissue Reveals Proteome Dynamics during the Initiation and Progression of Inflammatory Periodontal Disease
Q91712172	Primary Metabolism Is Distinctly Modulated by Plant Resistance Inducers in Coffea arabica Leaves Infected by Hemileia vastatrix
Q91707073	Primary myeloid cell proteomics and transcriptomics: importance of ß tubulin isotypes for osteoclast function
Q89802485	Pro-inflammatory activation following demyelination is required for myelin clearance and oligodendrogenesis
Q97597055	Probing SWATH-MS as a tool for proteome level quantification in a non-model fish
Q92428969	Probing the Proteomics Dark Regions by VAILase Cleavage at Aliphatic Amino Acids
Q110912683	Prochlorococcus extracellular vesicles: molecular composition and adsorption to diverse microbes
Q91145480	Profiling Differentially Abundant Proteins by Overexpression of Three Putative Methyltransferases in Xanthomonas axonopodis pv. glycines
Q92319578	Profiling of Histidine Phosphoproteome in Danio rerio by TiO2 Enrichment
Q92321961	Profiling of isomer-specific IgG N-glycosylation in cohort of Chinese colorectal cancer patients
Q96954866	Profiling of myristoylation in Toxoplasma gondii reveals an N-myristoylated protein important for host cell penetration
Q114837216	Profiling the 3D interaction between germ cell tumors and microenvironmental cells at the transcriptome and secretome level
Q103823985	Profiling the Murine SUMO Proteome in Response to Cardiac Ischemia and Reperfusion Injury
Q112642507	Progesterone receptor membrane component 1 (PGRMC1) binds and stabilizes cytochromes P450 through a heme-independent mechanism
Q92827471	Prognostic value of biomarkers EpCAM and αB-crystallin associated with lymphatic metastasis in breast cancer by iTRAQ analysis
Q92726015	Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project
Q112639169	Progressive axonopathy when oligodendrocytes lack the myelin protein CMTM5
Q92123978	Prolonged fasting followed by refeeding modifies proteome profile and parvalbumin expression in the fast-twitch muscle of pacu (Piaractus mesopotamicus)
Q91291806	Prolyl hydroxylase substrate adenylosuccinate lyase is an oncogenic driver in triple negative breast cancer
Q98162889	Protamine-2 Deficiency Initiates a Reactive Oxygen Species (ROS)-Mediated Destruction Cascade during Epididymal Sperm Maturation in Mice
Q94646575	Protease-resistant streptavidin for interaction proteomics
Q99413324	Proteasuria in nephrotic syndrome-quantification and proteomic profiling
Q93050041	Protective Cellular Mechanism of Estrogen Against Kidney Stone Formation: A Proteomics Approach and Functional Validation
Q112636795	Protective Signature of IFNγ-Stimulated Microglia Relies on miR-124-3p Regulation From the Secretome Released by Mutant APP Swedish Neuronal Cells
Q112639713	Protective immune trajectories in early viral containment of non-pneumonic SARS-CoV-2 infection
Q112642536	Protein Aggregation Is an Early Manifestation of Phospholamban p.(Arg14del)-Related Cardiomyopathy: Development of PLN-R14del-Related Cardiomyopathy
Q90946559	Protein Carbonylation in Patients with Myelodysplastic Syndrome: An Opportunity for Deferasirox Therapy
Q112303607	Protein Composition and Associated Material Properties of Cobweb Spiders' Gumfoot Glue Droplets
Q101053643	Protein Composition of the Subretinal Fluid Suggests Selective Diffusion of Vitreous Proteins in Retinal Detachment
Q112718805	Protein Identification of Spermatozoa and Seminal Plasma in Bottlenose Dolphin (Tursiops truncatus)
Q98617303	Protein Identification of Venoms of the African Spitting Cobras, Naja mossambica and Naja nigricincta nigricincta
Q63352298	Protein Inference Using PIA Workflows and PSI Standard File Formats
Q108588757	Protein Kinase C Activation Drives a Differentiation Program in an Oligodendroglial Precursor Model through the Modulation of Specific Biological Networks
Q112312978	Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling
Q112296389	Protein and Signaling Pathway Responses to rhIL-6 Intervention Before Lobaplatin Treatment in Osteosarcoma Cells
Q112297402	Protein cleavage influences surface protein presentation in Mycoplasma pneumoniae
Q92929335	Protein complexes including PGRMC1 and actin-associated proteins are disrupted by AG-205
Q114033402	Protein expression plasticity contributes to heat and drought tolerance of date palm
Q112301395	Protein folding stabilities are a major determinant of oxidation rates for buried methionine residues
Q94503303	Protein markers for Candida albicans EVs include claudin-like Sur7 family proteins
Q90485218	Protein modification with ISG15 blocks coxsackievirus pathology by antiviral and metabolic reprogramming
Q112300794	Protein proximity networks and functional evaluation of the casein kinase 1 gamma family reveal unique roles for CK1γ3 in WNT signaling
Q114873095	Protein signatures to distinguish aggressive from indolent prostate cancer
Q91775816	Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates
Q90949507	Protein tyrosine phosphatase receptor type R (PTPRR) antagonizes the Wnt signaling pathway in ovarian cancer by dephosphorylating and inactivating β-catenin
Q112301404	Protein with negative surface charge distribution, Bnr1, shows characteristics of a DNA-mimic protein and may be involved in the adaptation of Burkholderia cenocepacia
Q90975119	Proteins and microRNAs are differentially expressed in tear fluid from patients with Alzheimer's disease
Q112136779	Proteins interacting with Leishmania major PUF1: A proteomic dataset.
Q104438076	Proteo-genomic analysis of SARS-CoV-2: A clinical landscape of SNPs, COVID-19 proteome and host responses
Q91968752	Proteogenomic Analysis of Protein Sequence Alterations in Breast Cancer Cells
Q91241817	Proteogenomic Approach to UTR Peptide Identification
Q112612979	Proteogenomic landscape of uterine leiomyomas from hereditary leiomyomatosis and renal cell cancer patients
Q112286854	Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition
Q94921783	Proteolysis of Gingival Keratinocyte Cell Surface Proteins by Gingipains Secreted From Porphyromonas gingivalis - Proteomic Insights Into Mechanisms Behind Tissue Damage in the Diseased Gingiva
Q112717186	Proteome Analysis of Condensed Barley Mitotic Chromosomes
Q89663499	Proteome Analysis of Isolated Podocytes Reveals Stress Responses in Glomerular Sclerosis
Q112218099	Proteome Analysis of PC12 Cells Reveals Alterations in Translation Regulation and Actin Signaling Induced by Clozapine
Q125344327	Proteome Analysis of Swine Macrophages after Infection with Two Genotype II African Swine Fever Isolates of Different Pathogenicity
Q90217500	Proteome Integral Solubility Alteration: A High-Throughput Proteomics Assay for Target Deconvolution
Q112304584	Proteome Landscape of Epithelial-to-Mesenchymal Transition (EMT) of Retinal Pigment Epithelium Shares Commonalities With Malignancy-Associated EMT
Q90440056	Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism
Q112723665	Proteome Profile of Myelin in the Zebrafish Brain
Q102210120	Proteome analysis reveals a significant host-specific response in Rhizobium leguminosarum bv viciae endosymbiotic cells
Q112648568	Proteome and Network Analysis Provides Novel Insights Into Developing and Established Chemotherapy-Induced Peripheral Neuropathy
Q96127139	Proteome and transcriptome reveal the involvement of heat shock proteins and antioxidant system in thermotolerance of Clematis florida
Q112302858	Proteome data of neuroblastoma cells overexpressing Neuroglobin
Q90182419	Proteome data of serum samples from patients with schizophrenia
Q112303985	Proteome dataset of liver from dairy cows experiencing negative or positive energy balance at early lactation
Q92464851	Proteome dataset of mouse macrophage cell line infected with tick-borne encephalitis virus
Q112281422	Proteome dataset of sea bass (Dicentrarchus labrax) skin-scales exposed to fluoxetine and estradiol
Q98191454	Proteome dynamics analysis identifies functional roles of SDE2 and hypoxia in DNA damage response in prostate cancer cells
Q112297164	Proteome dynamics at broken replication forks reveal a distinct ATM-directed repair response suppressing DNA double-strand break ubiquitination
Q112301914	Proteome metabolome and transcriptome data for three Symbiodiniaceae under ambient and heat stress conditions
Q90468927	Proteome of a Moraxella catarrhalis Strain under Iron-Restricted Conditions
Q104465140	Proteome of fluid from human ovarian small antral follicles reveals insights in folliculogenesis and oocyte maturation
Q96018009	Proteome profile of neutrophils from a transgenic diabetic pig model shows distinct changes
Q96109992	Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer's disease
Q98576185	Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media
Q99418561	Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
Q112760116	Proteome-Wide Analysis of Heat-Stress in Pinus radiata Somatic Embryos Reveals a Combined Response of Sugar Metabolism and Translational Regulation Mechanisms
Q113785666	Proteome-Wide Analysis of Protein Lysine N -Homocysteinylation in Saccharomyces cerevisiae
Q112297843	Proteome-wide and matrisome-specific alterations during human pancreas development and maturation
Q114013694	Proteome-wide and matrisome-specific atlas of the human ovary computes fertility biomarker candidates and open the way for precision oncofertility
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Q101215195	Proteomic Adaptation of Streptococcus pneumoniae to the Antimicrobial Peptide Human Beta Defensin 3 (hBD3) in Comparison to Other Cell Surface Stresses
Q90399028	Proteomic Adaptation of Streptococcus pneumoniae to the Human Antimicrobial Peptide LL-37
Q102330461	Proteomic Analysis Reveals the Effect of Trichostatin A and Bone Marrow-Derived Dendritic Cells on the Fatty Acid Metabolism of NIH3T3 Cells under Oxygen-Glucose Deprivation Conditions
Q92563087	Proteomic Analysis of CSF from Patients with Leptomeningeal Melanoma Metastases Identifies Signatures Associated with Disease Progression and Therapeutic Resistance
Q112716773	Proteomic Analysis of Cardiac Adaptation to Exercise by High Resolution Mass Spectrometry
Q92580456	Proteomic Analysis of MYB-Regulated Secretome Identifies Functional Pathways and Biomarkers: Potential Pathobiological and Clinical Implications
Q96303271	Proteomic Analysis of Myocardia Containing the Obscurin R4344Q Mutation Linked to Hypertrophic Cardiomyopathy
Q90462045	Proteomic Analysis of Proteins Responsive to Drought and Low Temperature Stress in a Hard Red Spring Wheat Cultivar
Q92741697	Proteomic Analysis of Rhizobium favelukesii LPU83 in Response to Acid Stress
Q112303213	Proteomic Analysis of Trichomonas vaginalis Phagolysosome, Lysosomal Targeting, and Unconventional Secretion of Cysteine Peptidases
Q90227113	Proteomic Analysis of miR-195 and miR-497 Replacement Reveals Potential Candidates that Increase Sensitivity to Oxaliplatin in MSI/P53wt Colorectal Cancer Cells
Q91872147	Proteomic Changes in Human Sperm During Sequential in vitro Capacitation and Acrosome Reaction
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Q92702010	Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium Synechococcus elongatus UTEX 2973
Q102208076	Proteomic Insights into Senescence of Testicular Peritubular Cells from a Nonhuman Primate Model
Q89932052	Proteomic Investigation on Anopheles gambiae in Burkina Faso Related to Insecticide Pressures from Different Climatic Regions
Q90069513	Proteomic Investigations of Autism Brain Identify Known and Novel Pathogenetic Processes
Q101235286	Proteomic Investigations of Two Pakistani Naja Snake Venoms Species Unravel the Venom Complexity, Posttranslational Modifications, and Presence of Extracellular Vesicles
Q114783561	Proteomic Profiling of Black Coral (Antipatharia) Skeleton Reveals Hundreds of Skeleton-Associated Proteins Across Two Taxa
Q97415384	Proteomic Profiling of Emiliania huxleyi Using a Three-Dimensional Separation Method Combined with Tandem Mass Spectrometry
Q98776526	Proteomic Profiling of Extracellular Vesicles Derived from Cerebrospinal Fluid of Alzheimer's Disease Patients: A Pilot Study
Q90930530	Proteomic Profiling of Extracellular Vesicles Isolated From Cerebrospinal Fluid of Former National Football League Players at Risk for Chronic Traumatic Encephalopathy
Q96428652	Proteomic Profiling of Retinoblastoma-Derived Exosomes Reveals Potential Biomarkers of Vitreous Seeding
Q112301513	Proteomic Response Revealed Signaling Pathways Involving in the Mechanism of Polymyxin B-Induced Melanogenesis
Q112344927	Proteomic Screens for Suppressors of Anoikis Identify IL1RAP as a Promising Surface Target in Ewing Sarcoma
Q112305222	Proteomic Signature of Host Response to SARS-CoV-2 Infection in the Nasopharynx
Q112302562	Proteomic Signatures of Antimicrobial Resistance in Yersinia pestis and Francisella tularensis
Q112281899	Proteomic Signatures of Human Visceral and Subcutaneous Adipocytes
Q113208017	Proteomic Signatures of Monocytes in Hereditary Recurrent Fevers
Q104131360	Proteomic Study Identifies Glycolytic and Inflammation Pathways Involved in Recurrent Otitis Media
Q104469274	Proteomic analysis and biochemical alterations in marine mussel gills after exposure to the organophosphate flame retardant TDCPP
Q96342311	Proteomic analysis enables distinction of early- versus advanced-stage lung adenocarcinomas
Q96163897	Proteomic analysis of Sri Lanka Echis carinatus venom: Immunological cross-reactivity and enzyme neutralization potency of Indian polyantivenom
Q114872357	Proteomic analysis of dietary restriction in yeast reveals a role for Hsp26 in replicative lifespan extension
Q112759864	Proteomic analysis of early-stage incompatible and compatible interactions between grapevine and P. viticola
Q104289770	Proteomic analysis of extracellular vesicles and conditioned medium from human adipose-derived stem/stromal cells and dermal fibroblasts
Q102142946	Proteomic analysis of extracellular vesicles reveals an immunogenic cargo in rheumatoid arthritis synovial fluid
Q104694225	Proteomic analysis of honey. Identification of unique peptide markers for authentication of NZ mānuka (Leptospermum scoparium) honey
Q101044500	Proteomic analysis of mitochondrial biogenesis in cardiomyocytes differentiated from human induced pluripotent stem cells
Q104482051	Proteomic analysis of radio-resistant breast cancer xenografts: Increased TGF-β signalling and metabolism
Q114865931	Proteomic analysis of three medically important Nigerian Naja (Naja haje, Naja katiensis and Naja nigricollis) snake venoms
Q92958923	Proteomic analysis of urinary extracellular vesicles reveal biomarkers for neurologic disease
Q91759112	Proteomic analysis of whole saliva in chronic periodontitis
Q96111721	Proteomic analysis revealed ROS-mediated growth inhibition of Aspergillus terreus by shikonin
Q91538054	Proteomic analysis reveals the protective effects of emodin on severe acute pancreatitis induced lung injury by inhibiting neutrophil proteases activity
Q97689395	Proteomic and Bioinformatic Investigations of Heat-Treated Anisakis simplex Third-Stage Larvae
Q112298583	Proteomic and Functional Studies Reveal Detyrosinated Tubulin as Treatment Target in Sarcomere Mutation-Induced Hypertrophic Cardiomyopathy
Q125475060	Proteomic and Transcriptomic Responses of the Desiccation-Tolerant Moss Racomitrium canescens in the Rapid Rehydration Processes
Q111149512	Proteomic and lipidomic profiling of demyelinating lesions identifies fatty acids as modulators in lesion recovery
Q91912715	Proteomic and metabolomic profiling underlines the stage- and time-dependent effects of high temperature on grape berry metabolism
Q104509573	Proteomic and mitochondrial adaptations to early-life stress are distinct in juveniles and adults
Q93165894	Proteomic and transcriptional profiling of rat amygdala following social play
Q66311259	Proteomic and transcriptomic experiments reveal an essential role of RNA degradosome complexes in shaping the transcriptome of Mycobacterium tuberculosis.
Q99401372	Proteomic based identification of oocyte maturation related proteins in mouse GV oocytes
Q91206025	Proteomic characterization of Mycobacterium tuberculosis reveals potential targets of bostrycin
Q112304816	Proteomic characterization of secretory granules in dopaminergic neurons indicates chromogranin/secretogranin-mediated protein processing impairment in Parkinson's disease
Q94491059	Proteomic characterization of the mucosal pellicle formed in vitro on a cellular model of oral epithelium
Q112312839	Proteomic comparison between different tissue preservation methods for identification of promising biomarkers of urothelial bladder cancer
Q91114777	Proteomic dataset: Profiling of membrane fraction of Escherichia coli isolated from Crohn's disease patients after adhesion and invasion experiments
Q90392584	Proteomic genotyping: Using mass spectrometry to infer SNP genotypes in pigmented and non-pigmented hair
Q110596862	Proteomic identification of proliferation and progression markers in human polycythemia vera stem and progenitor cells
Q112313066	Proteomic identification of the UDP-GlcNAc: PI α1-6 GlcNAc-transferase subunits of the glycosylphosphatidylinositol biosynthetic pathway of Trypanosoma brucei
Q90035019	Proteomic investigation of the blue mussel larval shell organic matrix
Q92560819	Proteomic investigations of human HERC2 mutants: Insights into the pathobiology of a neurodevelopmental disorder
Q112215834	Proteomic profile of melanoma cell‐derived small extracellular vesicles in patients’ plasma: a potential correlate of melanoma progression
Q112304240	Proteomic profile of mesothelial exosomes isolated from peritoneal dialysis effluent of children with focal segmental glomerulosclerosis
Q110764869	Proteomic profiles of Zika virus‐infected placentas bearing fetuses with microcephaly
Q93199696	Proteomic profiling analysis of postmenopausal osteoporosis and osteopenia identifies potential proteins associated with low bone mineral density
Q112302268	Proteomic profiling of cisplatin-resistant and cisplatin-sensitive germ cell tumour cell lines using quantitative mass spectrometry
Q112640715	Proteomic profiling of concurrently isolated primary microvascular endothelial cells, pericytes, and vascular smooth muscle cells from adult mouse heart
Q112286369	Proteomic profiling of human amnion for preterm birth biomarker discovery
Q112582371	Proteomic profiling of murine biliary-derived hepatic organoids and their capacity for drug disposition, bioactivation and detoxification
Q91568882	Proteomic profiling of stallion spermatozoa suggests changes in sperm metabolism and compromised redox regulation after cryopreservation
Q91267634	Proteomic profiling of the thrombin-activated canine platelet secretome (CAPS)
Q112302564	Proteomic profiling reveals CDK6 upregulation as a targetable resistance mechanism for lenalidomide in multiple myeloma
Q89528016	Proteomic responses of spores of Bacillus subtilis to thermosonication involve large-scale alterations in metabolic pathways
Q101051243	Proteomic signatures of acute oxidative stress response to paraquat in the mouse heart
Q112717203	Proteomic signatures of myeloid derived suppressor cells from liver and lung metastases reveal functional divergence and potential therapeutic targets
Q116181517	Proteomic strategies for characterizing ubiquitin-like modifications
Q112709503	Proteomic traits vary across taxa in a coastal Antarctic phytoplankton bloom
Q91088369	Proteomics Analysis of Formalin Fixed Paraffin Embedded Tissues in the Investigation of Prostate Cancer
Q112301838	Proteomics Approach Highlights Early Changes in Human Fibroblasts-Pancreatic Ductal Adenocarcinoma Cells Crosstalk
Q124969766	Proteomics Data Analysis for the Identification of Proteins and Derived Proteotypic Peptides of Potential Use as Putative Drought Tolerance Markers for Quercus ilex
Q90741398	Proteomics Identification and Validation of Desmocollin-1 and Catechol-O-Methyltransferase as Proteins Associated with Breast Cancer Cell Migration and Metastasis
Q112284482	Proteomics Investigations of Potential Protein Biomarkers in Sera of Rabbits Infected With Schistosoma japonicum
Q96636291	Proteomics Profiling of KAIMRC1 in Comparison to MDA-MB231 and MCF-7
Q112302851	Proteomics Study Reveals the Anti-Depressive Mechanisms and the Compatibility Advantage of Chaihu-Shugan-San in a Rat Model of Chronic Unpredictable Mild Stress
Q112313630	Proteomics analysis of a human brain sample from a mucolipidosis type IV patient reveals pathophysiological pathways
Q104789034	Proteomics and Metabolomics Reveal the Regulatory Pathways of Ripening and Quality in Post-Harvest Kiwifruits
Q112304924	Proteomics and Phosphoproteomics Profiling of Drug-Addicted BRAFi-Resistant Melanoma Cells
Q92222094	Proteomics and Proteogenomics Analysis of Sweetpotato ( Ipomoea batatas) Leaf and Root
Q112302453	Proteomics and image screening data of cellular secretomes and their biological effects: Comparing the signals sent by cardiac stromal cells and dermal fibroblasts in culture
Q118164653	Proteomics characterisation of the L929 cell supernatant and its role in BMDM differentiation
Q92564444	Proteomics characterization of extracellular vesicles sorted by flow cytometry reveals a disease-specific molecular cross-talk from cerebrospinal fluid and tears in multiple sclerosis
Q112293015	Proteomics characterization of mitochondrial-derived vesicles under oxidative stress
Q113877072	Proteomics dataset from 26th Dynasty Egyptian mummified remains sampled using minimally invasive skin sampling tape strips
Q91987072	Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma
Q112718317	Proteomics informed by transcriptomics for a qualitative and quantitative analysis of the sialoproteome of adult Ornithodoros moubata ticks
Q104285002	Proteomics of Anatomical Sections of the Gut of Nosema-Infected Western Honeybee (Apis mellifera) Reveals Different Early Responses to Nosema spp. Isolates
Q104743342	Proteomics of Muscle Microdialysates Identifies Potential Circulating Biomarkers in Facioscapulohumeral Muscular Dystrophy
Q94680955	Proteomics of SARS-CoV-2-infected host cells reveals therapy targets
Q95846133	Proteomics of intracellular freezing survival
Q101051295	Proteomics of regenerated tissue in response to a titanium implant with a bioactive surface in a rat tibial defect model
Q112295347	Proteomics of resistance to Notch1 inhibition in acute lymphoblastic leukemia reveals targetable kinase signatures
Q91852970	Proteomics reveals a set of highly enriched proteins in epiretinal membrane compared with inner limiting membrane
Q102058270	Proteomics reveals sex-specific heat shock response of Baikal amphipod Eulimnogammarus cyaneus
Q90778787	Proteomics-Based Characterization of miR-574-5p Decoy to CUGBP1 Suggests Specificity for mPGES-1 Regulation in Human Lung Cancer Cells
Q91024817	Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine
Q93064605	Proteomics-Derived Biomarker Panel Improves Diagnostic Precision to Classify Endometrioid and High-grade Serous Ovarian Carcinoma
Q101411039	Proteomics-informed identification of luminal targets for in situ diagnosis of inflammatory bowel disease
Q114998875	ProteomicsDB: toward a FAIR open-source resource for life-science research
Q100461700	Proteotranscriptomics assisted gene annotation and spatial proteomics of Bombyx mori BmN4 cell line
Q114075898	Proteotype coevolution and quantitative diversity across 11 mammalian species
Q100454803	Proteotyping Environmental Microorganisms by Phylopeptidomics: Case Study Screening Water from a Radioactive Material Storage Pool
Q104440035	Proteotyping SARS-CoV-2 virus from nasopharyngeal swabs: a proof-of-concept focused on a 3 min mass spectrometry window
Q97520771	Prothrombin is a binding partner of the human Receptor of Advanced Glycation End products
Q94934128	Protocol for high-yield production of photo-leucine-labeled proteins in Escherichia coli
Q96160472	Proximal Biotinylation Based Combinatory Approach for Isolating Integral Plasma Membrane Proteins
Q104100052	Proximity-based proteomics reveals the thylakoid lumen proteome in the cyanobacterium Synechococcus sp. PCC 7002
Q112303948	Proximity-dependent biotinylation detects associations between SARS coronavirus nonstructural protein 1 and stress granule-associated proteins
Q64082339	Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane reveals functional interactions with endoplasmic reticulum exit sites
Q98652428	Pseudomonas aeruginosa Presents Multiple Vital Changes in Its Proteome in the Presence of 3-Hydroxyphenylacetic Acid, a Promising Antimicrobial Agent
Q96609110	Pulsed SILAM Reveals In Vivo Dynamics of Murine Brain Protein Translation
Q112303369	Purification of an insect juvenile hormone receptor complex enables insights into its post-translational phosphorylation
Q90287798	Purified F-ATP synthase forms a Ca2+-dependent high-conductance channel matching the mitochondrial permeability transition pore
Q100991900	Putative Bifunctional Chorismate Mutase/Prephenate Dehydratase Contributes to the Virulence of Acidovorax citrulli
Q92143115	Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance
Q112701246	Pytheas: a software package for the automated analysis of RNA sequences and modifications via tandem mass spectrometry
Q112287203	Qualitative and Quantitative Shotgun Proteomics Data Analysis from Data-Dependent Acquisition Mass Spectrometry
Q90817529	Qualitative proteomic comparison of metabolic and CM-like protein fractions in old and modern wheat Italian genotypes by a shotgun approach
Q64970337	Quantification of cellular protein and redox imbalance using SILAC-iodoTMT methodology.
Q93116192	Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses
Q90102278	Quantification of exercise-regulated ubiquitin signaling in human skeletal muscle identifies protein modification cross talk via NEDDylation
Q91984424	Quantification of the Dynamic Phosphorylation Process of ERK Using Stable Isotope Dilution Selective Reaction Monitoring Mass Spectrometry
Q92431690	Quantifying the impact of public omics data
Q112292428	Quantitative Analysis of Tyrosine Phosphorylation from FFPE Tissues Reveals Patient-Specific Signaling Networks
Q91129227	Quantitative Proteome Analysis of Atg5-Deficient Mouse Embryonic Fibroblasts Reveals the Range of the Autophagy-Modulated Basal Cellular Proteome
Q90756695	Quantitative Proteome Profiling of Coxiella burnetii Reveals Major Metabolic and Stress Differences Under Axenic and Cell Culture Cultivation
Q92302892	Quantitative Proteome Responses to Oncolytic Reovirus in GM-CSF- and M-CSF-Differentiated Bone Marrow-Derived Cells
Q112585589	Quantitative Proteomic Analysis in Alveolar Type II Cells Reveals the Different Capacities of RAS and TGF-β to Induce Epithelial-Mesenchymal Transition
Q89680024	Quantitative Proteomic Analysis of the Central Amygdala in Neuropathic Pain Model Rats
Q100540829	Quantitative Proteomics Analysis of Lytic KSHV Infection in Human Endothelial Cells Reveals Targets of Viral Immune Modulation
Q98389943	Quantitative Proteomics Comparison of Total Expressed Proteomes of Anisakis simplex Sensu Stricto, A. pegreffii, and Their Hybrid Genotype
Q92429259	Quantitative Proteomics Reveal an Altered Pattern of Protein Expression in Brain Tissue from Mice Lacking GPR37 and GPR37L1
Q112295513	Quantitative Proteomics Reveals that the OGT Interactome Is Remodeled in Response to Oxidative Stress
Q112290707	Quantitative Proteomics and Relative Enzymatic Activities Reveal Different Mechanisms in Two Peanut Cultivars (Arachis hypogaea L.) Under Waterlogging Conditions
Q91293669	Quantitative Proteomics of Enriched Esophageal and Gut Tissues from the Human Blood Fluke Schistosoma mansoni Pinpoints Secreted Proteins for Vaccine Development
Q92754917	Quantitative Proteomics of the Endothelial Secretome Identifies RC0497 as Diagnostic of Acute Rickettsial Spotted Fever Infections
Q89682682	Quantitative Proteomics to Identify Nuclear RNA-Binding Proteins of Malat1
Q100519420	Quantitative Visions of Reality at the Tick-Host Interface: Biochemistry, Genomics, Proteomics, and Transcriptomics as Measures of Complete Inventories of the Tick Sialoverse
Q112297166	Quantitative acetylome analysis reveals histone modifications that may predict prognosis in hepatitis B-related hepatocellular carcinoma
Q95930780	Quantitative analysis of Y-Chromosome gene expression across 36 human tissues
Q104289881	Quantitative analysis of proteins secreted by Leishmania (Viannia) braziliensis strains associated to distinct clinical manifestations of American Tegumentary Leishmaniasis
Q112276747	Quantitative analysis of redox proteome reveals oxidation-sensitive protein thiols acting in fundamental processes of developmental hematopoiesis
Q99557037	Quantitative data independent acquisition glycoproteomics of sparkling wine
Q99560439	Quantitative mapping of transcriptome and proteome dynamics during polarization of human iPSC-derived neurons
Q64077773	Quantitative mass spectrometric analysis to unravel glycoproteomic signature of follicular fluid in women with polycystic ovary syndrome
Q112714176	Quantitative phosphoproteomic analysis reveals chemoresistance-related proteins and signaling pathways induced by rhIL-6 in human osteosarcoma cells
Q112569303	Quantitative proteomic analysis of bronchoalveolar lavage fluid in West Highland white terriers with canine idiopathic pulmonary fibrosis
Q112278124	Quantitative proteomic analysis of cerebrospinal fluid reveals CD163, A2M and full-length APP as potential diagnostic biomarkers of paediatric bacterial meningitis
Q109544639	Quantitative proteomic analysis reveals differential modulation of crucial stage specific proteins during promastigote to amastigote differentiation in Leishmania donovani
Q98657285	Quantitative proteomic dataset from oro- and naso-pharyngeal swabs used for COVID-19 diagnosis: Detection of viral proteins and host's biological processes altered by the infection
Q91752483	Quantitative proteomic profiling of the rat substantia nigra places glial fibrillary acidic protein at the hub of proteins dysregulated during aging: Implications for idiopathic Parkinson's disease
Q101126808	Quantitative proteomic reveals gallium maltolate induces an iron-limited stress response and reduced quorum-sensing in Pseudomonas aeruginosa
Q90956616	Quantitative proteomics analysis of membrane glucocorticoid receptor activation in rainbow trout skeletal muscle
Q89857607	Quantitative proteomics analysis reveals important roles of N-glycosylation on ER quality control system for development and pathogenesis in Magnaporthe oryzae
Q112304237	Quantitative proteomics identifies the universally conserved ATPase Ola1p as a positive regulator of heat shock response in Saccharomyces cerevisiae
Q100431254	Quantitative proteomics of cerebrospinal fluid using tandem mass tags in dogs with recurrent epileptic seizures
Q66311285	Quantitative proteomics revealed C6orf203/MTRES1 as a factor preventing stress-induced transcription deficiency in human mitochondria.
Q100515652	Quantitative proteomics reveals Shexiang Baoxin Pill exerts cardioprotective effects by preserving energy metabolism in a rat model of myocardial infarction
Q99401066	Quantitative proteomics reveals stage-specific protein regulation of triple negative breast cancer
Q89998953	Quantitative proteomics to study aging in rabbit liver
Q91329678	Quorum sensing modulates the formation of virulent Legionella persisters within infected cells
Q92305763	R2-P2 rapid-robotic phosphoproteomics enables multidimensional cell signaling studies
Q92234635	RAB18 Loss Interferes With Lipid Droplet Catabolism and Provokes Autophagy Network Adaptations
Q104110936	RNA-binding proteins La and HuR cooperatively modulate translation repression of PDCD4 mRNA
Q112757705	RNA_seq and quantitative proteomic analysis of Dictyostelium knock-out cells lacking the core autophagy proteins ATG9 and/or ATG16
Q112285420	RNAmetasome network for macromolecule biogenesis in human cells
Q103828605	RNF41 regulates the damage recognition receptor Clec9A and antigen cross-presentation in mouse dendritic cells
Q99611517	RNF43 truncations trap CK1 to drive niche-independent self-renewal in cancer
Q112278272	RNase E and HupB dynamics foster mycobacterial cell homeostasis and fitness
Q97595840	RORα Phosphorylation by Casein Kinase 1α as Glucose Signal to Regulate Estrogen Sulfation in Human Liver Cells
Q92913626	RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis
Q112313646	Rab1-AMPylation by Legionella DrrA is allosterically activated by Rab1
Q97529964	Rab27a co-ordinates actin-dependent transport by controlling organelle-associated motors and track assembly proteins
Q112304285	RabA2b Overexpression Alters the Plasma-Membrane Proteome and Improves Drought Tolerance in Arabidopsis
Q90488954	Rapid and Quantitative Protein Precipitation for Proteome Analysis by Mass Spectrometry
Q64117684	Rapid and Reversible Knockdown of Endogenously Tagged Endosomal Proteins via an Optimized HaloPROTAC Degrader
Q99572042	Rapid and direct control of target protein levels with VHL-recruiting dTAG molecules
Q123056817	Rapidly evolving genes underlie Aedes aegypti mosquito reproductive resilience during drought
Q95279244	RasGRP1 is a causal factor in the development of l-DOPA-induced dyskinesia in Parkinson's disease
Q100512282	Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization
Q89935029	Re-Evaluating the Mechanism of Action of α,β-Unsaturated Carbonyl DUB Inhibitors b-AP15 and VLX1570: A Paradigmatic Example of Unspecific Protein Cross-linking with Michael Acceptor Motif-Containing Drugs
Q104748200	Recent advances in mass spectrometry-based peptidomics workflows to identify short-open-reading-frame-encoded peptides and explore their functions
Q90014238	Reciprocal transplantation of the heterotrophic coral Tubastraea coccinea (Scleractinia: Dendrophylliidae) between distinct habitats did not alter its venom toxin composition
Q91743833	Reconstitution of Microtubule Nucleation In Vitro Reveals Novel Roles for Mzt1
Q112722803	Recovery of Depleted miR-146a in ALS Cortical Astrocytes Reverts Cell Aberrancies and Prevents Paracrine Pathogenicity on Microglia and Motor Neurons
Q112723194	Recruitment of toxin-like proteins with ancestral venom function supports endoparasitic lifestyles of Myxozoa
Q90134157	Recurrent GNAQ mutation encoding T96S in natural killer/T cell lymphoma
Q118837554	Red blood cell mannoses as phagocytic ligands mediating both sickle cell anaemia and malaria resistance
Q92617909	Redox modifications of cysteine-containing proteins, cell cycle arrest and translation inhibition: Involvement in vitamin C-induced breast cancer cell death
Q112305728	Reduced exploratory behavior in neuronal nucleoredoxin knockout mice
Q90248503	Reducing the Immunogenic Potential of Wheat Flour: Silencing of Alpha Gliadin Genes in a U.S. Wheat Cultivar
Q123149178	Reference proteomes of five wheat species as starting point for future design of cultivars with lower allergenic potential
Q90197115	Refinements of LC-MS/MS Spectral Counting Statistics Improve Quantification of Low Abundance Proteins
Q94458540	Region-Specific Proteome Changes of the Intestinal Epithelium during Aging and Dietary Restriction
Q112342321	Regulated cell death joins in atherosclerotic plaque silent progression
Q91083032	Regulation of Pyridine Nucleotide Metabolism During Tomato Fruit Development Through Transcript and Protein Profiling
Q112305224	Regulation of aquaporin-4 expression in the central nervous system investigated using M23-AQP4 null mouse
Q94561354	Regulation of mRNA export through API5 and nuclear FGF2 interaction
Q91323267	Regulation of macrophage activity by surface receptors contained within Borrelia burgdorferi-enriched phagosomal fractions
Q97567930	Regulation of stem cell function and neuronal differentiation by HERV-K via mTOR pathway
Q99417642	Regulation of titin-based cardiac stiffness by unfolded domain oxidation (UnDOx)
Q113293824	Remarkable intrapopulation venom variability in the monocellate cobra (Naja kaouthia) unveils neglected aspects of India's snakebite problem
Q112300964	Reovirus μ2 protein modulates host cell alternative splicing by reducing protein levels of U5 snRNP core components
Q104272661	Reply to Comments on Proteomic Investigations of Two Pakistani Naja Snake Venom Species Unravel the Venom Complexity, Posttranslational Modifications, and Presence of Extracellular Vesicles. Toxins 2020, 12, 669
Q112352499	Reprogramming of microRNA expression via E2F1 downregulation promotes Salmonella infection both in infected and bystander cells
Q99546293	Research on The Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, according to the HUPO Human Proteome Project
Q92431090	Resistance in marine cyanobacteria differs against specialist and generalist cyanophages
Q92287580	Resolving subcellular plant metabolism
Q112638816	Resourcing, annotating, and analysing synthetic peptides of SARS-CoV-2 for immunopeptidomics and other immunological studies
Q100486482	Respiratory Supercomplexes Promote Mitochondrial Efficiency and Growth in Severely Hypoxic Pancreatic Cancer
Q89628141	Respiratory chain signalling is essential for adaptive remodelling following cardiac ischaemia
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Q94561169	Retargeting from the CR3 to the LFA-1 receptor uncovers the adenylyl cyclase enzyme-translocating segment of Bordetella adenylate cyclase toxin
Q107273150	Revealing the Structural Plasticity of SARS-CoV-2 nsp7 and nsp8 Using Structural Proteomics
Q96348981	Revealing the venomous secrets of the spider's web
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Q114871708	Reversible amyloids of pyruvate kinase couple cell metabolism and stress granule disassembly
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Q92598655	Rhomboid intramembrane protease YqgP licenses bacterial membrane protein quality control as adaptor of FtsH AAA protease
Q91678714	Ribosomal protein gene RPL9 variants can differentially impair ribosome function and cellular metabolism
Q91891906	Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome
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Q112304999	Role of Premycofactocin Synthase in Growth, Microaerophilic Adaptation, and Metabolism of Mycobacterium tuberculosis
Q112715906	Roles and Cellular Localization of GBP2 and NAB2 During the Blood Stage of Malaria Parasites
Q96115139	Root isoprene formation alters lateral root development
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Q99597083	Rubisco lysine acetylation occurs at very low stoichiometry in mature Arabidopsis leaves: implications for regulation of enzyme function
Q93214286	S-Glutathionylation of human inducible Hsp70 reveals a regulatory mechanism involving the C-terminal α-helical lid
Q90620544	S-Trap Eliminates Cell Culture Media Polymeric Surfactants for Effective Proteomic Analysis of Mammalian Cell Bioreactor Supernatants
Q89596136	S-ketamine induces acute changes in the proteome of the mouse amygdala
Q92483218	S100A9 extends lifespan in insulin deficiency
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Q101210706	SARS-CoV-2 desensitizes host cells to interferon through inhibition of the JAK-STAT pathway
Q107547771	SARS-CoV-2 disrupts proximal elements in the JAK-STAT pathway
Q101043355	SARS-CoV-2 evades immune detection in alveolar macrophages
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Q112716756	SCF^Fbxw5 targets kinesin-13 proteins to facilitate ciliogenesis
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Q112645012	SETD7-mediated monomethylation is enriched on soluble Tau in Alzheimer's disease
Q112301782	SFPQ-ABL1 and BCR-ABL1 use different signaling networks to drive B-cell acute lymphoblastic leukemia
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Q92905272	SILAC-Based Quantification of TGFBR2-Regulated Protein Expression in Extracellular Vesicles of Microsatellite Unstable Colorectal Cancers
Q112312478	SIRT3 consolidates heterochromatin and counteracts senescence
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Q112303210	SIRT5 Directly Inhibits the PI3K/AKT Pathway in Prostate Cancer Cell Lines
Q112305263	SLX4IP promotes RAP1 SUMOylation by PIAS1 to coordinate telomere maintenance through NF-κB and Notch signaling
Q112302924	SMARCA5 interacts with NUP98-NSD1 oncofusion protein and sustains hematopoietic cells transformation
Q112293081	SOD1 is a Possible Predictor of COVID-19 Progression as Revealed by Plasma Proteomics
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Q112303166	SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients
Q112301329	SPIN enables high throughput species identification of archaeological bone by proteomics
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Q112281740	SU086, an inhibitor of HSP90, impairs glycolysis and represents a treatment strategy for advanced prostate cancer
Q90012657	SUMOylation Landscape of Renal Cortical Collecting Duct Cells
Q94445213	SWATH-MS Analysis of FFPE Tissues Identifies Stathmin as a Potential Marker of Endometrial Cancer in Patients Exposed to Tamoxifen
Q112289627	SWATH-MS for prospective identification of protein blood biomarkers of rtPA-associated intracranial hemorrhage in acute ischemic stroke: a pilot study
Q98297528	Salivary proteotypes of gingivitis tolerance and resilience
Q93050295	Salt-Treated Roots of Oryza australiensis Seedlings are Enriched with Proteins Involved in Energetics and Transport
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Q112305159	Scaffold-free 3D cell culture of primary skin fibroblasts induces profound changes of the matrisome
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Q91717201	Screening of serum biomarkers of preeclampsia by proteomics combination with bioinformatics
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Q112302780	Secreted Toxins From Staphylococcus aureus Strains Isolated From Keratinocyte Skin Cancers Mediate Pro-tumorigenic Inflammatory Responses in the Skin
Q112281148	Secreted protein markers in oral squamous cell carcinoma (OSCC)
Q89889035	Secretome Analysis of Cardiomyocytes Identifies PCSK6 as a Novel Player in Cardiac Remodeling After Myocardial Infarction
Q113142337	Secretome Analysis of Clavibacter nebraskensis Strains Treated with Natural Xylem Sap In Vitro Predicts Involvement of Glycosyl Hydrolases and Proteases in Bacterial Aggressiveness
Q96637215	Secretome Analysis of Mesenchymal Stem Cell Factors Fostering Oligodendroglial Differentiation of Neural Stem Cells In Vivo
Q100426701	Selection for resistance to a glyphosate-containing herbicide in Salmonella enterica does not result in a sustained activation of the tolerance response or increased cross-tolerance and cross-resistance to clinically important antibiotics
Q91602154	Selective Proteolysis of α-Lactalbumin by Endogenous Enzymes of Human Milk at Acidic pH
Q99615599	Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90 and ROF1
Q112306060	Selective delignification of poplar wood with a newly isolated white-rot basidiomycete Peniophora incarnata T-7 by submerged fermentation to enhance saccharification
Q98513581	Selective inhibition of STAT3 signaling using monobodies targeting the coiled-coil and N-terminal domains
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Q122415611	Selenium mediates exercise-induced adult neurogenesis and reverses learning deficits induced by hippocampal injury and aging
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Q112303192	Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction
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Q110177976	Sequences in the cytoplasmic tail of SARS-CoV-2 Spike facilitate expression at the cell surface and syncytia formation
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Q96954589	Sequential Precipitation and Delipidation Enables Efficient Enrichment of Low-Molecular Weight Proteins and Peptides from Human Plasma
Q91786290	Serial Systemic Candida albicans Infection Highlighted by Proteomics
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Q112303510	Serpinc1 Acts as a Tumor Suppressor in Hepatocellular Carcinoma Through Inducing Apoptosis and Blocking Macrophage Polarization in an Ubiquitin-Proteasome Manner
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Q112352782	Sex impacts cardiac function and the proteome response to thyroid hormone in aged mice
Q112296927	Sex-Related Differences in Protein Expression in Sarcomere Mutation-Positive Hypertrophic Cardiomyopathy
Q108898749	Sex-Specific Social Behavior and Amygdala Proteomic Deficits in Foxp2+/− Mutant Mice
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Q114369451	Shotgun and TMT-Labeled Proteomic Analysis of the Ovarian Proteins of an Insect Vector, Aedes aegypti (Diptera: Culicidae)
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Q112289810	Shotgun-based proteomics of extracellular vesicles in Alzheimer's disease reveals biomarkers involved in immunological and coagulation pathways
Q112312862	Sickle Cell Trait Modulates the Proteome and Phosphoproteome of Plasmodium falciparum-Infected Erythrocytes
Q104735874	Signal Recognition Particle RNA Contributes to Oxidative Stress Response in Deinococcus radiodurans by Modulating Catalase Localization
Q92241605	Signature-Ion-Triggered Mass Spectrometry Approach Enabled Discovery of N- and O-Linked Glycosylated Neuropeptides in the Crustacean Nervous System
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Q112351862	Silencing of Opisthorchis viverrini Tetraspanin Gene Expression Results in Reduced Secretion of Extracellular Vesicles
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Q104141123	Single Mutation in the NFU1 Gene Metabolically Reprograms Pulmonary Artery Smooth Muscle Cells
Q95293576	Single or Combined Dietary Supply of Psidium guajava and Phyllanthus amarus Extracts Differentially Modulate Immune Responses and Liver Proteome in Striped Catfish (Pangasianodon hyphophthalmus)
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Q92626757	Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry Produces over 4400 Phosphopeptide Identifications from a 220 ng Sample
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Q112570455	Sirtuin-1 sensitive lysine-136 acetylation drives phase separation and pathological aggregation of TDP-43
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Q112708217	Site-Specific Profiling of 4-Thiouridine Across Transfer RNA Genes in Escherichia coli
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Q102213291	Site-specific ubiquitination of the E3 ligase HOIP regulates apoptosis and immune signaling
Q108768178	Site-specific ubiquitylation acts as a regulator of linker histone H1
Q112301148	Skin Cancer-Associated S. aureus Strains Can Induce DNA Damage in Human Keratinocytes by Downregulating DNA Repair and Promoting Oxidative Stress
Q112304975	Skin exposure to UVB light induces a skin-brain-gonad axis and sexual behavior
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Q104412529	Small-molecule inhibitors of human mitochondrial DNA transcription
Q112303815	Smooth muscle-specific MMP17 (MT4-MMP) regulates the intestinal stem cell niche and regeneration after damage
Q94950838	Social isolation stress-resilient rats reveal energy shift from glycolysis to oxidative phosphorylation in hippocampal nonsynaptic mitochondria
Q114873165	Sod1 integrates oxygen availability to redox regulate NADPH production and the thiol redoxome
Q114102175	Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment
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Q92979222	Somatic gene editing ameliorates skeletal and cardiac muscle failure in pig and human models of Duchenne muscular dystrophy
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Q101236973	Spastin recovery in hereditary spastic paraplegia by preventing neddylation-dependent degradation
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Q112302233	Spatial proteomics finds CD155 and Endophilin-A1 as mediators of growth and invasion in medulloblastoma
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Q114162722	Spatially variant immune infiltration scoring in human cancer tissues
Q112313728	Spatiotemporal profiling of cytosolic signaling complexes in living cells by selective proximity proteomics
Q112304553	Spatiotemporal proteomic profiling of the pro-inflammatory response to lipopolysaccharide in the THP-1 human leukaemia cell line
Q112301855	Specific inflammatory osteoclast precursors induced during chronic inflammation give rise to highly active osteoclasts associated with inflammatory bone loss
Q97635813	Specific thylakoid protein phosphorylations are prerequisites for overwintering of Norway spruce (Picea abies) photosynthesis
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Q112305920	Stress granules inhibit fatty acid oxidation by modulating mitochondrial permeability
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Q89896708	The Hypoxic Proteome and Metabolome of Barley (Hordeum vulgare L.) with and without Phytoglobin Priming
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Q91311914	The Leukemogenic TCF3-HLF Complex Rewires Enhancers Driving Cellular Identity and Self-Renewal Conferring EP300 Vulnerability
Q97688184	The Lipid Receptor G2A (GPR132) Mediates Macrophage Migration in Nerve Injury-Induced Neuropathic Pain
Q112304315	The Major Peanut Allergen Ara h 2 Produced in Nicotiana benthamiana Contains Hydroxyprolines and Is a Viable Alternative to the E. Coli Product in Allergy Diagnosis
Q96135807	The Mi-2 nucleosome remodeler and the Rpd3 histone deacetylase are involved in piRNA-guided heterochromatin formation
Q91011003	The Mitochondrial Acyl-carrier Protein Interaction Network Highlights Important Roles for LYRM Family Members in Complex I and Mitoribosome Assembly
Q99213682	The Molecular Floodgates of Stress-Induced Senescence Reveal Translation, Signalling and Protein Activity Central to the Post-Mortem Proteome
Q93074671	The MyMOMA domain of MYO19 encodes for distinct Miro-dependent and Miro-independent mechanisms of interaction with mitochondrial membranes
Q91023084	The NADH Dehydrogenase Nde1 Executes Cell Death after Integrating Signals from Metabolism and Proteostasis on the Mitochondrial Surface
Q96229434	The Novel J-Domain Protein Mrj1 Is Required for Mitochondrial Respiration and Virulence in Cryptococcus neoformans
Q112301400	The Okur-Chung Neurodevelopmental Syndrome Mutation CK2^K198R Leads to a Rewiring of Kinase Specificity
Q90053669	The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm
Q112686288	The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Q92051208	The Peptide Venom Composition of the Fierce Stinging Ant Tetraponera aethiops (Formicidae: Pseudomyrmecinae)
Q113786903	The Plasmodium falciparum Nuclear Protein Phosphatase NIF4 Is Required for Efficient Merozoite Invasion and Regulates Artemisinin Sensitivity
Q96227205	The Progression of Acute Myeloid Leukemia from First Diagnosis to Chemoresistant Relapse: A Comparison of Proteomic and Phosphoproteomic Profiles
Q99711401	The Proteome and Secretome of Cortical Brain Cells Infected With Herpes Simplex Virus
Q91107145	The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics
Q101407193	The Proteomic Landscape of Centromeric Chromatin Reveals an Essential Role for the Ctf19CCAN Complex in Meiotic Kinetochore Assembly
Q90584411	The Proteomic Landscape of Cysteine Oxidation That Underpins Retinoic Acid-Induced Neuronal Differentiation
Q104487636	The Puzzle of Metabolite Exchange and Identification of Putative Octotrico Peptide Repeat Expression Regulators in the Nascent Photosynthetic Organelles of Paulinella chromatophora
Q90753391	The RNA-binding protein SART3 promotes miR-34a biogenesis and G1 cell cycle arrest in lung cancer cells
Q112300918	The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins
Q90133938	The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei
Q101348783	The RSC (Remodels the Structure of Chromatin) complex of Candida albicans shows compositional divergence with distinct roles in regulating pathogenic traits
Q89806150	The Relevance of Thimet Oligopeptidase in the Regulation of Energy Metabolism and Diet-Induced Obesity
Q116182552	The Respiratory Syncytial Virus M2-2 protein is targeted for proteasome degradation and inhibits translation and stress granules assembly
Q112709711	The Role of Antibiotic Resistance Genes in the Fitness Cost of Multiresistance Plasmids
Q98783326	The Role of RodA-Conserved Cysteine Residues in the Aspergillus fumigatus Conidial Surface Organization
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Q91997856	The SHCA adapter protein cooperates with lipoma-preferred partner in the regulation of adhesion dynamics and invadopodia formation
Q115182634	The Secretome of Human Neonatal Mesenchymal Stem Cells Modulates Doxorubicin-Induced Cytotoxicity: Impact in Non-Tumor Cells
Q90093116	The Streptomyces coelicolor Small ORF trpM Stimulates Growth and Morphological Development and Exerts Opposite Effects on Actinorhodin and Calcium-Dependent Antibiotic Production
Q112304019	The Subcellular Proteome of a Planctomycetes Bacterium Shows That Newly Evolved Proteins Have Distinct Fractionation Patterns
Q92595846	The TOR Pathway Plays Pleiotropic Roles in Growth and Stress Responses of the Fungal Pathogen Cryptococcus neoformans
Q104618494	The TRIM9/TRIM67 neuronal interactome reveals novel activators of morphogenesis
Q112587445	The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis
Q102066338	The Temperature-Regulation of Pseudomonas aeruginosa cmaX-cfrX-cmpX Operon Reveals an Intriguing Molecular Network Involving the Sigma Factors AlgU and SigX
Q112297716	The UBA domain of conjugating enzyme Ubc1/Ube2K facilitates assembly of K48/K63-branched ubiquitin chains
Q113756523	The UIP/IPF fibroblastic focus is a collagen biosynthesis factory embedded in a distinct extracellular matrix
Q112311368	The Universally Conserved ATPase YchF Regulates Translation of Leaderless mRNA in Response to Stress Conditions
Q104791895	The active DNA-PK holoenzyme occupies a tensed state in a staggered synaptic complex
Q90356369	The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis
Q99727616	The atypical chemokine receptor 3 interacts with Connexin 43 inhibiting astrocytic gap junctional intercellular communication
Q111912417	The autoimmune signature of hyperinflammatory multisystem inflammatory syndrome in children
Q96576567	The bovine cumulus proteome is influenced by maturation condition and maturational competence of the oocyte
Q112641859	The butyrophilin 1a1 knockout mouse revisited: Ablation of Btn1a1 leads to concurrent cell death and renewal in the mammary epithelium during lactation
Q104063481	The catalytic mechanism of vitamin K epoxide reduction in a cellular environment
Q108582094	The chaperone-binding activity of the mitochondrial surface receptor Tom70 protects the cytosol against mitoprotein-induced stress
Q101132925	The complexity and dynamics of the tissue glycoproteome associated with prostate cancer progression
Q112287846	The comprehensive interactomes of human adenosine RNA methyltransferases and demethylases reveal distinct functional and regulatory features
Q94474083	The cooperative action of CSB, CSA, and UVSSA target TFIIH to DNA damage-stalled RNA polymerase II
Q104679321	The deubiquitinase TRABID stabilises the K29/K48-specific E3 ubiquitin ligase HECTD1
Q112304165	The deubiquitinase USP11 is a versatile and conserved regulator of autophagy
Q91853342	The deubiquitinase USP7 stabilizes Maf proteins to promote myeloma cell survival
Q92045761	The developmental phosphoproteome of Haemonchus contortus
Q112582397	The dipeptide prolyl-hydroxyproline promotes cellular homeostasis and lamellipodia-driven motility via active β1-integrin in adult tendon cells
Q112584639	The dominantly expressed class II molecule from a resistant MHC haplotype presents only a few Marek's disease virus peptides by using an unprecedented binding motif
Q96230284	The effect of phytoglobin overexpression on the plant proteome during nonhost response of barley (Hordeum vulgare) to wheat powdery mildew (Blumeria graminis f. sp. tritici)
Q102328975	The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase
Q96591521	The final assembly of trehalose polyphleates takes place within the outer layer of the mycobacterial cell envelope
Q100463285	The glucose-sensing transcription factor ChREBP is targeted by proline hydroxylation
Q96609024	The guanine nucleotide exchange factor VAV3 participates in ERBB4-mediated cancer cell migration
Q104684596	The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice
Q90169862	The heme regulatory motifs of heme oxygenase-2 contribute to the transfer of heme to the catalytic site for degradation
Q93039172	The histone chaperone CAF-1 cooperates with the DNA methyltransferases to maintain Cd4 silencing in cytotoxic T cells
Q112576526	The human GID complex engages two independent modules for substrate recruitment
Q98187080	The human liver matrisome - Proteomic analysis of native and fibrotic human liver extracellular matrices for organ engineering approaches
Q112305838	The iRhom homology domain is indispensable for ADAM17-mediated TNFα and EGF receptor ligand release
Q99371275	The inflammatory response of the supraspinatus muscle in rotator cuff tear conditions
Q96591503	The insulin receptor adaptor IRS2 is an APC/C substrate that promotes cell cycle protein expression and a robust spindle assembly checkpoint
Q112302198	The intrinsically disordered TSSC4 protein acts as a helicase inhibitor, placeholder and multi-interaction coordinator during snRNP assembly and recycling
Q96134667	The iron-regulated surface determinant B (IsdB) protein from Staphylococcus aureus acts as a receptor for the host protein vitronectin
Q112312755	The landscape of molecular chaperones across human tissues reveals a layered architecture of core and variable chaperones
Q96764690	The level of putative carotenoid-binding proteins determines the body color in two species of endemic Lake Baikal amphipods
Q96764900	The lipid transfer properties of CETP define the concentration and composition of plasma lipoproteins
Q97426299	The liver matrisome - looking beyond collagens
Q118123845	The low-density lipoprotein receptor–mTORC1 axis coordinates CD8+ T cell activation
Q112297655	The lytic polysaccharide monooxygenase CbpD promotes Pseudomonas aeruginosa virulence in systemic infection
Q104500342	The mRNA Binding Proteome of Proliferating and Differentiated Muscle Cells
Q112302291	The methyl phosphate capping enzyme Bmc1/Bin3 is a stable component of the fission yeast telomerase holoenzyme
Q112313470	The methyltransferase METTL9 mediates pervasive 1-methylhistidine modification in mammalian proteomes
Q89947275	The microtubule-associated histone methyltransferase SET8, facilitated by transcription factor LSF, methylates α-tubulin
Q112718558	The middle lipin domain adopts a membrane-binding dimeric protein fold
Q101450410	The mitochondrial isoform glutathione peroxidase 3 (OsGPX3) is involved in ABA responses in rice plants
Q91129486	The molecular architecture of photoreceptor phosphodiesterase 6 (PDE6) with activated G protein elucidates the mechanism of visual excitation
Q95935611	The mouse heart mitochondria N terminome provides insights into ClpXP-mediated proteolysis
Q90816706	The nanophthalmos protein TMEM98 inhibits MYRF self-cleavage and is required for eye size specification
Q112303584	The nucleoporin Nup50 activates the Ran guanine nucleotide exchange factor RCC1 to promote NPC assembly at the end of mitosis
Q94571194	The omics discovery REST interface
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Q99567995	The peptidyl-prolyl isomerases FKBP15-1 and FKBP15-2 negatively affect lateral root development by repressing the vacuolar invertase VIN2 in Arabidopsis
Q112723960	The phosphorylation of the Smad2/3 linker region by nemo-like kinase regulates TGF-β signaling
Q125466426	The plasma membrane-associated cation-binding protein PCaP1 of Arabidopsis thaliana is a uranyl-binding protein
Q94951175	The plasma proteome and the acute phase protein response in canine pyometra
Q104106043	The plastid proteome of the nonphotosynthetic chlorophycean alga Polytomella parva
Q92479210	The plastidial Arabidopsis thaliana NFU1 protein binds and delivers [4Fe-4S] clusters to specific client proteins
Q114231152	The potential of remdesivir to affect function, metabolism and proliferation of cardiac and kidney cells in vitro
Q96124455	The protein kinase PknB negatively regulates biosynthesis and trafficking of mycolic acids in mycobacteria
Q96577238	The proteome landscape of the kingdoms of life
Q112303458	The proteome, not the transcriptome, predicts that oocyte superovulation affects embryonic phenotypes in mice
Q112288758	The proteomic architecture of schizophrenia iPSC-derived cerebral organoids reveals alterations in GWAS and neuronal development factors
Q112302640	The proteomic profile of the human myotendinous junction
Q106453350	The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation
Q100512293	The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans
Q112304438	The regulatory landscape of the human HPF1- and ARH3-dependent ADP-ribosylome
Q115779725	The renal lineage factor PAX8 controls oncogenic signalling in kidney cancer
Q102371681	The secretome of liver X receptor agonist-treated early outgrowth cells decreases atherosclerosis in Ldlr-/- mice
Q91863976	The secretome of skin cancer cells activates the mTOR/MYC pathway in healthy keratinocytes and induces tumorigenic properties
Q89789591	The secretome profiling of a pediatric airway epithelium infected with hRSV identified aberrant apical/basolateral trafficking and novel immune modulating (CXCL6, CXCL16, CSF3) and antiviral (CEACAM1) proteins
Q112301850	The serum of COVID-19 asymptomatic patients up-regulates proteins related to endothelial dysfunction and viral response in circulating angiogenic cells ex-vivo
Q110477997	The short isoform of the host antiviral protein ZAP acts as an inhibitor of SARS-CoV-2 programmed ribosomal frameshifting
Q112302664	The signal transducer CD24 suppresses the germ cell program and promotes an ectodermal rather than mesodermal cell fate in embryonal carcinomas
Q112584825	The spatial network of skeletal proteins in a stony coral
Q112712541	The steroidal lactone withaferin A impedes T-cell motility by inhibiting the kinase ZAP70 and subsequent kinome signaling
Q97642457	The structure and symmetry of radial spoke protein complex in Chlamydomonas flagella
Q104073769	The substrate specificity of the human TRAPPII complex's Rab-guanine nucleotide exchange factor activity
Q89947236	The tetraspanin Tspan15 is an essential subunit of an ADAM10 scissor complex
Q89454671	The tight junction protein TJP1 regulates the feeding-modulated hepatic circadian clock
Q100490958	The tissue proteome in the multi-omic landscape of kidney disease
Q99248366	The type VII secretion system protects Staphylococcus aureus against antimicrobial host fatty acids
Q95831978	The ubiquitin-conjugating enzyme UBE2K determines neurogenic potential through histone H3 in human embryonic stem cells
Q92741126	The ubiquitin-conjugating enzyme UBE2QL1 coordinates lysophagy in response to endolysosomal damage
Q114866455	The ubiquitous catechol moiety elicits siderophore and angucycline production in Streptomyces
Q104066644	The ubiquitylome of developing cortical neurons
Q113143613	The velvet protein Vel1 controls initial plant root colonization and conidia formation for xylem distribution in Verticillium wilt
Q104489437	The versatile interactome of chloroplast ribosomes revealed by affinity purification mass spectrometry
Q112304614	The yeast mitochondrial succinylome: Implications for regulation of mitochondrial nucleoids
Q101049963	Thermal proteome profiling in zebrafish reveals effects of napabucasin on retinoic acid metabolism
Q112304502	Thrombospondin-4 Is a Soluble Dermal Inflammatory Signal That Selectively Promotes Fibroblast Migration and Keratinocyte Proliferation for Skin Regeneration and Wound Healing
Q91803109	Thylakoid Protein Phosphorylation Dynamics in a Moss Mutant Lacking SERINE/THREONINE PROTEIN KINASE STN8
Q112757427	Tick extracellular vesicles enable arthropod feeding and promote distinct outcomes of bacterial infection
Q112302364	Time series proteome profile analysis reveals a protective role of citrate synthase in angiotensin II-induced atrial fibrillation
Q112304992	Time-Resolved Proteome Analysis of Listeria monocytogenes during Infection Reveals the Role of the AAA+ Chaperone ClpC for Host Cell Adaptation
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Q89678977	Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding
Q112647721	Time-series transcriptomics and proteomics reveal alternative modes to decode p53 oscillations
Q90430628	Tissue Proteome Signatures Associated with Five Grades of Prostate Cancer and Benign Prostatic Hyperplasia
Q112636014	Tissue catabolism and donor-specific dexamethasone response in a human osteochondral model of post-traumatic osteoarthritis
Q111442140	Tissue environment, not ontogeny, defines murine intestinal intraepithelial T lymphocytes
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Q112637429	To New Beginnings: Riboproteogenomics Discovery of N-Terminal Proteoforms in Arabidopsis Thaliana
Q112313253	Tolerogenic Effect Elicited by Protein Fraction Derived From Different Formulas for Dietary Treatment of Cow's Milk Allergy in Human Cells
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Q90955778	Top-down mass spectrometry of histone modifications in sorghum reveals potential epigenetic markers for drought acclimation
Q96637625	Top-down proteomics of human saliva discloses significant variations of the protein profile in patients with mastocytosis
Q110659435	Topographic mapping of the glioblastoma proteome reveals a triple-axis model of intra-tumoral heterogeneity
Q112287953	Topological Dissection of Proteomic Changes Linked to the Limbic Stage of Alzheimer's Disease
Q112303388	Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco
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Q100945957	Towards middle-up analysis of polyclonal antibodies: subclass-specific N-glycosylation profiling of murine immunoglobulin G (IgG) by means of HPLC-MS
Q104479242	Towards the molecular architecture of the peroxisomal receptor docking complex
Q104492894	Toxicogenomic fin(ger)prints for thyroid disruption AOP refinement and biomarker identification in zebrafish embryos
Q97517779	Toxicoproteomic Profiling of hPXR Transgenic Mice Treated with Rifampicin and Isoniazid
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Q112284164	Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection
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Q114871482	Transcription factors: Bridge between cell signaling and gene regulation
Q112278674	Transcriptome and Proteome Analysis in LUHMES Cells Overexpressing Alpha-Synuclein
Q101120345	Transcriptomes of Major Proximal Tubule Cell Culture Models
Q112313526	Transcriptomic and Proteomic Analyses of Nepenthes ampullaria and Nepenthes rafflesiana Reveal Parental Molecular Expression in the Pitchers of Their Hybrid, Nepenthes × hookeriana
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Q104737604	Transfection With Plasmid Causing Stable Expression of a Foreign Gene Affects General Proteome Pattern in Giardia lamblia Trophozoites
Q89726887	Transgelin Silencing Induces Different Processes in Different Breast Cancer Cell Lines
Q101138919	Transplantation of telomerase/myocardin-co-expressing mesenchymal cells in the mouse promotes myocardial revascularization and tissue repair
Q92491526	Treacle controls the nucleolar response to rDNA breaks via TOPBP1 recruitment and ATR activation
Q112312751	Triple SILAC identified progestin-independent and dependent PRA and PRB interacting partners in breast cancer
Q112312770	Triqler for MaxQuant: Enhancing Results from MaxQuant by Bayesian Error Propagation and Integration
Q98730655	Triton X-114 Fractionated Subcellular Proteome of Leptospira Interrogans Shows Selective Enrichment of Pathogenic and Outer Membrane Proteins in the Detergent Fraction
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Q112302144	Tryptophan depletion results in tryptophan-to-phenylalanine substitutants
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Q92479220	Twin enzymes, divergent control: The cholesterogenic enzymes DHCR14 and LBR are differentially regulated transcriptionally and post-translationally
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Q111442295	Two zinc finger proteins with functions in m6A writing interact with HAKAI
Q98383960	Type 2 diabetes risk gene Dusp8 regulates hypothalamic Jnk signaling and insulin sensitivity
Q104129417	Tyrosine-EDC Conjugation, an Undesirable Side Effect of the EDC-Catalyzed Carboxyl Labeling Approach
Q112302113	UBR4/POE facilitates secretory trafficking to maintain circadian clock synchrony
Q112301359	UDP-glucose dehydrogenase expression is upregulated following EMT and differentially affects intracellular glycerophosphocholine and acetylaspartate levels in breast mesenchymal cell lines
Q102220423	UFBP1, a key component in ufmylation, enhances drug sensitivity by promoting proteasomal degradation of oxidative stress-response transcription factor Nrf2
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Q104585436	USP22 controls necroptosis by regulating receptor-interacting protein kinase 3 ubiquitination
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Q112294058	Ultrasensitive single-cell proteomics workflow identifies >1000 protein groups per mammalian cell
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P8978	DBLP publication ID	journals/nar/Perez-RiverolCB19
P356	DOI	10.1093/NAR/GKY1106
P932	PMC publication ID	6323896
P698	PubMed publication ID	30395289

P50	author	Alvis Brazma	Q29840681
		Juan Antonio Vizcaíno	Q29998931
		Johannes Griss	Q29998980
		Gerhard Mayer	Q53584882
		Julian Uszkoreit	Q53584890
		Enrique Audain	Q57064620
		Mathias Walzer	Q86564089
		Manuel Bernal-Llinares	Q88914578
		Suresh Hewapathirana	Q91107141
		Deepti J Kundu	Q92814834
		Andrew F Jarnuczak	Q42367408
		Yasset Perez-Riverol	Q42704191
P2093	author name string	Martin Eisenacher
		Attila Csordas
		Jürgen Cox
		Timo Sachsenberg
		Sule Yilmaz
		Tobias Ternent
		Enrique Pérez
		Julianus Pfeuffer
		Jingwen Bai
		Shivani Tiwary
		Avinash Inuganti
P2860	cites work	Exploring the potential of public proteomics data	Q26785886
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P275	copyright license	Creative Commons Attribution 4.0 International	Q20007257
P6216	copyright status	copyrighted	Q50423863
P433	issue	D1
P407	language of work or name	English	Q1860
P921	main subject	database	Q8513
P304	page(s)	D442-D450
P577	publication date	2019-01-01
P1433	published in	Nucleic Acids Research	Q135122
P1476	title	The PRIDE database and related tools and resources in 2019: improving support for quantification data
P478	volume	47

The PRIDE database and related tools and resources in 2019: improving support for quantification data

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