Progressive multiple sequence alignment with indel evolution

scholarly article by Massimo Maiolo published in September 2018

Progressive multiple sequence alignment with indel evolution is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bmcbi/MaioloZGA18
P6179Dimensions Publication ID1107123455
P356DOI10.1186/S12859-018-2357-1
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/s12859-018-2357-1
P932PMC publication ID6151001
P698PubMed publication ID30241460

P2093author name stringMaria Anisimova
Xiaolei Zhang
Manuel Gil
Massimo Maiolo
P2860cites workMUSCLE: a multiple sequence alignment method with reduced time and space complexityQ21284290
Fast and robust multiple sequence alignment with phylogeny-aware gap placementQ21284322
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0Q27860476
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
Evolutionary trees from DNA sequences: A maximum likelihood approachQ27860898
T-Coffee: A novel method for fast and accurate multiple sequence alignmentQ27860999
Computational complexity of multiple sequence alignment with SP-scoreQ28211691
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysisQ28284481
On the complexity of multiple sequence alignmentQ28288844
An algorithm for progressive multiple alignment of sequences with insertionsQ29614688
Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment.Q30355030
Simple chained guide trees give high-quality protein multiple sequence alignmentsQ33972122
Nature, position, and frequency of mutations made in a single cycle of HIV-1 replicationQ34120857
Evolutionary inference via the Poisson Indel ProcessQ34320068
Evolutionary HMMs: a Bayesian approach to multiple alignmentQ34394409
Inching toward reality: an improved likelihood model of sequence evolutionQ35965228
Graph-based modeling of tandem repeats improves global multiple sequence alignmentQ37197836
Instability in progressive multiple sequence alignment algorithmsQ40442593
Alignment uncertainty and genomic analysisQ42643477
Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks.Q43111375
An evolutionary model for maximum likelihood alignment of DNA sequencesQ43642702
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectmolecular biologyQ7202
applied mathematicsQ33521
sequence alignmentQ827246
structural biologyQ908902
P304page(s)331
P577publication date2018-09-21
P1433published inBMC BioinformaticsQ4835939
P1476titleProgressive multiple sequence alignment with indel evolution
P478volume19

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