| P50 | author | Zhixi Tian | Q59564606 |
| P2093 | author name string | Zhi Liu | |
| | Zheng Wang | |
| | Jixiang Zhang | |
| | Ya-Long Guo | |
| | Yucheng Liu | |
| | Yanting Shen | |
| | Shulin Liu | |
| | Baoge Zhu | |
| | Zongbiao Duan | |
| P2860 | cites work | BLAST+: architecture and applications | Q21284368 |
| | A map of rice genome variation reveals the origin of cultivated rice | Q22122144 |
| | Genome sequence of the palaeopolyploid soybean | Q22122200 |
| | Mathematical model for studying genetic variation in terms of restriction endonucleases | Q24564849 |
| | The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana | Q24622979 |
| | Establishing, maintaining and modifying DNA methylation patterns in plants and animals | Q24630397 |
| | Versatile and open software for comparing large genomes | Q24807126 |
| | Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation | Q26823692 |
| | Epialleles in plant evolution | Q26995502 |
| | The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data | Q27860742 |
| | Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. | Q51848359 |
| | Whole-genome sequencing of multiple Arabidopsis thaliana populations. | Q51856188 |
| | Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. | Q52693094 |
| | Epigenome dynamics: a quantitative genetics perspective. | Q55050875 |
| | Rapid Establishment of Genetic Incompatibility through Natural Epigenetic Variation | Q56027543 |
| | Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes | Q57087743 |
| | Epigenetic and genetic influences on DNA methylation variation in maize populations | Q57539936 |
| | A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica) | Q86992278 |
| | Natural occurring epialleles determine vitamin E accumulation in tomato fruits | Q88159955 |
| | Chloroplast DNA Underwent Independent Selection from Nuclear Genes during Soybean Domestication and Improvement. | Q50519534 |
| | Exploiting induced and natural epigenetic variation for crop improvement. | Q39410075 |
| | Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits | Q39554597 |
| | Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection | Q39817345 |
| | Gluconeogenesis and related aspects of glycolysis | Q40137023 |
| | Genome-wide demethylation of Arabidopsis endosperm. | Q40260246 |
| | Dynamic DNA methylation reconfiguration during seed development and germination. | Q41036450 |
| | Comparative population genomics of maize domestication and improvement | Q41155351 |
| | Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. | Q41836564 |
| | Patterns of population epigenomic diversity. | Q41869587 |
| | Gene body DNA methylation in plants: a means to an end or an end to a means? | Q43125328 |
| | Regulation of pyruvate dehydrogenase complex activity in plant cells | Q44358659 |
| | Genome-wide association studies of 14 agronomic traits in rice landraces. | Q45908136 |
| | Genomic analyses provide insights into the history of tomato breeding | Q46441334 |
| | Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize. | Q46744224 |
| | The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene | Q47812243 |
| | A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. | Q48086140 |
| | The Sequence Alignment/Map format and SAMtools | Q27860966 |
| | Hypermethylated SUPERMAN epigenetic alleles in arabidopsis | Q28246520 |
| | Inherited epigenetic variation--revisiting soft inheritance | Q28301797 |
| | pENCODE: a plant encyclopedia of DNA elements | Q28635111 |
| | Global food demand and the sustainable intensification of agriculture | Q28740557 |
| | Trimmomatic: a flexible trimmer for Illumina sequence data | Q29547278 |
| | Conserved role of intragenic DNA methylation in regulating alternative promoters | Q29616289 |
| | DNA methylation landscapes: provocative insights from epigenomics | Q29617144 |
| | Evolution, consequences and future of plant and animal domestication | Q29618577 |
| | Current perspectives and the future of domestication studies | Q29999008 |
| | Population genomic and genome-wide association studies of agroclimatic traits in sorghum | Q30583217 |
| | SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data | Q30765037 |
| | metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data | Q31029990 |
| | A transposon-induced epigenetic change leads to sex determination in melon | Q33348078 |
| | Assessing the impact of transgenerational epigenetic variation on complex traits | Q33474817 |
| | SoyTEdb: a comprehensive database of transposable elements in the soybean genome | Q33531930 |
| | Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons. | Q33743701 |
| | Plant retrotransposons | Q33847714 |
| | An epigenetic mutation responsible for natural variation in floral symmetry | Q33874385 |
| | Structure, function and evolution of plant disease resistance genes | Q33954603 |
| | Epigenetic control of transposon transcription and mobility in Arabidopsis | Q34033427 |
| | HISAT: a fast spliced aligner with low memory requirements | Q34043398 |
| | Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression | Q34321999 |
| | Plant science. Biosynthesis, regulation, and domestication of bitterness in cucumber | Q34449915 |
| | StringTie enables improved reconstruction of a transcriptome from RNA-seq reads | Q34463372 |
| | Rate, spectrum, and evolutionary dynamics of spontaneous epimutations | Q34476018 |
| | Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata | Q34573233 |
| | Mechanisms of recent genome size variation in flowering plants | Q34582833 |
| | The molecular genetics of crop domestication | Q34594954 |
| | The biochemistry, metabolism and inherited defects of the pentose phosphate pathway: a review | Q34873925 |
| | Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage | Q34874236 |
| | Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing | Q34975602 |
| | High-throughput approaches for plant epigenomic studies | Q35037464 |
| | KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases | Q35075729 |
| | Transgenerational epigenetic instability is a source of novel methylation variants | Q35533269 |
| | DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation. | Q35549029 |
| | MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing | Q35563521 |
| | Molecular population genetics and the search for adaptive evolution in plants | Q35938799 |
| | Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements | Q35947977 |
| | 'Leveling' the playing field for analyses of single-base resolution DNA methylomes. | Q36470808 |
| | Epigenetic and epigenomic variation in Arabidopsis thaliana. | Q36819770 |
| | ShortStack: comprehensive annotation and quantification of small RNA genes | Q36932867 |
| | Genome-wide analysis of DNA methylation patterns | Q36967594 |
| | Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes. | Q37175967 |
| | Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. | Q37207914 |
| | A metastable DWARF1 epigenetic mutant affecting plant stature in rice. | Q37256810 |
| | Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield | Q37414115 |
| | Crop Epigenomics: Identifying, Unlocking, and Harnessing Cryptic Variation in Crop Genomes | Q37435328 |
| | A comparative view of the evolution of grasses under domestication | Q37514471 |
| | Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation | Q37515750 |
| | Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions | Q37519714 |
| | Covering your bases: inheritance of DNA methylation in plant genomes | Q37615687 |
| | siRNAs and DNA methylation: seedy epigenetics | Q37686859 |
| | Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana | Q37810465 |
| | Epigenetic contribution to stress adaptation in plants | Q37859508 |
| | Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes | Q38205419 |
| | RNA-directed DNA methylation: an epigenetic pathway of increasing complexity | Q38209993 |
| | Epigenetic reprogramming in plant sexual reproduction. | Q38232403 |
| | agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update | Q38433950 |
| | Long non-coding RNAs and their functions in plants. | Q38581513 |
| | Stable inheritance of DNA methylation allows creation of epigenotype maps and the study of epiallele inheritance patterns in the absence of genetic variation | Q38621627 |
| | Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean | Q38637627 |
| | Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues. | Q38674078 |
| | Genetic sources of population epigenomic variation | Q38828884 |
| | Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. | Q39044302 |
| | Mechanisms and regulation of biosynthesis of saturated fatty acids | Q39100611 |
| | The causes and consequences of DNA methylome variation in plants | Q39146823 |
| | Gene body DNA methylation in plants. | Q39161230 |
| | A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity | Q39329657 |
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | domestication | Q11395 |
| P304 | page(s) | 128 | |
| P577 | publication date | 2018-09-10 | |
| P1433 | published in | Genome Biology | Q5533480 |
| P1476 | title | DNA methylation footprints during soybean domestication and improvement | |
| P478 | volume | 19 | |