Preliminary Assessment of the Impact of MicroRNA-Mediated Regulation on Coding Sequence Evolution in Mammals

scientific article published on 16 June 2006

Preliminary Assessment of the Impact of MicroRNA-Mediated Regulation on Coding Sequence Evolution in Mammals is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/S00239-005-0273-2
P698PubMed publication ID16786435

P50authorLaurence D. HurstQ6500657
P2093author name stringLaurence D. Hurst
P2860cites workSingle nucleotide polymorphism-based validation of exonic splicing enhancersQ21092824
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Synonymous mutations in CFTR exon 12 affect splicing and are not neutral in evolution.Q24524120
Evolutionary distance estimation under heterogeneous substitution pattern among lineagesQ77070462
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The microRNA RegistryQ24600787
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Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammalsQ24630840
Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammalsQ24814018
Prediction of mammalian microRNA targetsQ27860498
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targetsQ27860792
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAsQ27861053
MicroRNAs: genomics, biogenesis, mechanism, and functionQ27861070
Statistical methods for detecting molecular adaptationQ28140163
Selection on Human Genes as Revealed by Comparisons to Chimpanzee cDNAQ28202148
Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptorQ28205599
Evolution of synonymous codon usage in metazoansQ28214982
Unbiased estimation of the rates of synonymous and nonsynonymous substitutionQ28266175
Evolution of the Zfx and Zfy genes: rates and interdependence between the genesQ28268947
Synonymous SNPs provide evidence for selective constraint on human exonic splicing enhancersQ28284630
Specificity of microRNA target selection in translational repressionQ28776123
The Ka/Ks ratio: diagnosing the form of sequence evolutionQ29305458
The widespread impact of mammalian MicroRNAs on mRNA repression and evolutionQ29547173
Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesisQ29547607
Expression profiling reveals off-target gene regulation by RNAiQ29615965
Mutation rates in mammalian genomesQ29618251
Human microRNAs target a functionally distinct population of genes with AT-rich 3' UTRsQ30476270
Site-to-site variation of synonymous substitution ratesQ31000547
Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzeeQ33932596
Hearing silence: non-neutral evolution at synonymous sites in mammalsQ34485607
The causes of synonymous rate variation in the rodent genome. Can substitution rates be used to estimate the sex bias in mutation rate?Q34607045
Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presenceQ34645301
The signature of selection mediated by expression on human genesQ40830000
DNA sequence evolution: the sounds of silenceQ40955511
Natural selection affects frequencies of AG and GT dinucleotides at the 5' and 3' ends of exonsQ42002516
The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodentsQ42559488
Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sitesQ46068671
Physiological identification of human transcripts translationally regulated by a specific microRNA.Q51961818
Codon bias as a factor in regulating expression via translation rate in the human genomeQ51977697
Measuring spontaneous deleterious mutation processQ52237142
Deleterious mutations and the evolution of sex.Q52583324
Evidence for codon bias selection at the pre-mRNA level in eukaryotesQ52968406
Biased codon usage near intron-exon junctions: selection on splicing enhancers, splice-site recognition or something else?Q52976588
Evidence for Purifying Selection Against Synonymous Mutations in Mammalian Exonic Splicing EnhancersQ59303878
Evidence for purifying selection acting on silent sites in BRCA1Q73428606
P433issue2
P921main subjectmicroRNAQ310899
P304page(s)174-182
P577publication date2006-06-16
P1433published inJournal of Molecular EvolutionQ6295595
P1476titlePreliminary assessment of the impact of microRNA-mediated regulation on coding sequence evolution in mammals
P478volume63

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cites work (P2860)
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