RNA sequencing of the i human herpesvirus 6B transcriptome to identify targets for clinical assays distinguishing between latent and active infections

scientific article published on 17 January 2019

RNA sequencing of the i human herpesvirus 6B transcriptome to identify targets for clinical assays distinguishing between latent and active infections is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/JVI.01419-18
P932PMC publication ID6340040
P698PubMed publication ID30429336

P50authorMichael BoeckhQ56072917
Joshua A HillQ57056017
Keith R. JeromeQ57904630
Meei-Li HuangQ61713476
P2093author name stringRuth Hall Sedlak
Danielle M Zerr
Serge Barcy
Minako Ikoma
Ryan S Basom
Vikas Peddu
P2860cites workTopHat: discovering splice junctions with RNA-SeqQ24655505
Fast gapped-read alignment with Bowtie 2Q27860699
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2Q29547403
HTSeq--a Python framework to work with high-throughput sequencing dataQ29614489
Diagnostic assays for active infection with human herpesvirus 6 (HHV-6).Q33793920
Detection of human herpesvirus 6 by reverse transcription-PCR.Q33963662
Human herpesvirus 6 can be detected in cerebrospinal fluid without associated symptoms after allogeneic hematopoietic cell transplantation.Q34195389
Detection of Human Herpesvirus 6B (HHV-6B) Reactivation in Hematopoietic Cell Transplant Recipients with Inherited Chromosomally Integrated HHV-6A by Droplet Digital PCR.Q36834718
Gene expression profiles in febrile children with defined viral and bacterial infectionQ37068521
A comprehensive next generation sequencing-based virome assessment in brain tissue suggests no major virus - tumor associationQ37085029
Cord-blood hematopoietic stem cell transplant confers an increased risk for human herpesvirus-6-associated acute limbic encephalitis: a cohort analysis.Q37276889
Epstein-Barr virus and human herpesvirus 6 detection in a non-Hodgkin's diffuse large B-cell lymphoma cohort by using RNA sequencingQ37336454
HHV-6 encephalitis in umbilical cord blood transplantation: a systematic review and meta-analysisQ38045704
Roseoloviruses in transplant recipients: clinical consequences and prospects for treatment and prevention trialsQ38256992
Past, present, and future perspectives on the diagnosis of Roseolovirus infections.Q38280936
Chromosomally integrated HHV-6: impact on virus, cell and organismal biology.Q38280941
Outcomes of hematopoietic cell transplantation using donors or recipients with inherited chromosomally integrated HHV-6.Q38373988
Human CD4+ T cell response to human herpesvirus 6.Q39392116
Development of reverse transcriptase PCR assays for detection of active human herpesvirus 6 infectionQ39465102
Viral gene expression patterns in human herpesvirus 6B-infected T cellsQ39684335
Microarray-based determination of the lytic cascade of human herpesvirus 6B.Q39822084
Detection of HHV-6-specific mRNA and antigens in PBMCs of individuals with chromosomally integrated HHV-6 (ciHHV-6).Q40182260
A reverse transcription-nested PCR assay for HHV-6 mRNA early transcript detection after transplantation.Q40328553
Transcriptional profiling of human herpesvirus type B (HHV-6B) in an adult T cell leukemia cell line as in vitro model for persistent infection.Q40456665
An acute graft-versus-host disease activity index to predict survival after hematopoietic cell transplantation with myeloablative conditioning regimensQ40483853
Structure of transcripts and proteins encoded by U79-80 of human herpesvirus 6 and its subcellular localization in infected cellsQ40872874
Quantification of two viral transcripts by real time PCR to investigate human herpesvirus type 6 active infectionQ42245900
Effect of antivirals on human herpesvirus 6 replication in hematopoietic stem cell transplant recipientsQ43843926
Stabilization of mRNA expression in whole blood samples.Q44198540
Correlations of HHV-6 viral load and plasma IL-6 concentration with HHV-6 encephalitis in allogeneic stem cell transplant recipientsQ47733733
Detection of active human herpesvirus-6 infection in the brain: correlation with polymerase chain reaction detection in cerebrospinal fluidQ48318086
Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6.Q52648412
Development of quantitative RT-PCR assays for detection of three classes of HHV-6B gene transcripts.Q54299593
Quantitation of cytomegalovirus DNA and characterization of viral gene expression in bronchoalveolar cells of infected patients with and without pneumonitisQ71120788
Strong interaction between human herpesvirus 6 and peripheral blood monocytes/macrophages during acute infectionQ74457120
Detection and quantification of human herpesvirus 6 genomes using bronchoalveolar lavage fluid in immunocompromised patients with interstitial pneumoniaQ74527399
Human herpesvirus-6 (HHV-6) DNA in plasma reflects the presence of infected blood cells rather than circulating viral particlesQ79879547
P433issue3
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
P577publication date2019-01-17
P1433published inJournal of VirologyQ1251128
P1476titleRNA Sequencing of the In Vivo Human Herpesvirus 6B Transcriptome To Identify Targets for Clinical Assays Distinguishing between Latent and Active Infections
P478volume93

Reverse relations

cites work (P2860)
Q107272881Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients
Q90722657Human Herpesvirus Sequencing in the Genomic Era: The Growing Ranks of the Herpetic Legion
Q90369398Human herpesvirus 6 in transplant recipients: an update on diagnostic and treatment strategies

Search more.