| scholarly article | Q13442814 |
| P50 | author | Blaire Steven | Q42807994 |
| Renee B. Johansen | Q54689025 | ||
| Michaeline Albright | Q60058235 | ||
| John Dunbar | Q88867056 | ||
| La Verne Gallegos-Graves | Q111427256 | ||
| P2093 | author name string | Cheryl R Kuske | |
| Deanna Lopez | |||
| P2860 | cites work | The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes | Q21284200 |
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| Changes in Fungal Community Composition in Response to Elevated Atmospheric CO2 and Nitrogen Fertilization Varies with Soil Horizon | Q27500370 | ||
| Profile hidden Markov models | Q27860536 | ||
| Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes | Q28596124 | ||
| Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation | Q28603064 | ||
| Fast and sensitive protein alignment using DIAMOND | Q29011988 | ||
| Accelerated Profile HMM Searches | Q29547576 | ||
| Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective | Q30705590 | ||
| Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping | Q30791992 | ||
| Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities | Q30847417 | ||
| MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data | Q31109557 | ||
| Atmospheric N deposition increases bacterial laccase-like multicopper oxidases: implications for organic matter decay | Q33798741 | ||
| Simulated atmospheric N deposition alters fungal community composition and suppresses ligninolytic gene expression in a northern hardwood forest. | Q33942073 | ||
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| Microbial mechanisms mediating increased soil C storage under elevated atmospheric N deposition | Q34503770 | ||
| The Pfam protein families database: towards a more sustainable future | Q34505322 | ||
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| Systems-based approaches to unravel multi-species microbial community functioning | Q35143652 | ||
| Microbial growth and carbon use efficiency in the rhizosphere and root-free soil | Q35145339 | ||
| Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests | Q35531418 | ||
| Water pulses and biogeochemical cycles in arid and semiarid ecosystems | Q35676361 | ||
| Effect of 21 different nitrogen sources on global gene expression in the yeast Saccharomyces cerevisiae | Q35856792 | ||
| Soil fungal cellobiohydrolase I gene (cbhI) composition and expression in a loblolly pine plantation under conditions of elevated atmospheric CO2 and nitrogen fertilization. | Q35940884 | ||
| Nitrogen regulation of lignin peroxidase gene transcription | Q36058720 | ||
| dbCAN: a web resource for automated carbohydrate-active enzyme annotation | Q36088423 | ||
| Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone | Q36140307 | ||
| Transcriptional regulation of plant cell wall degradation by filamentous fungi | Q36231154 | ||
| Ligninolytic enzyme system of Phanaerochaete chrysosporium: synthesized in the absence of lignin in response to nitrogen starvation | Q36424261 | ||
| KEGG as a reference resource for gene and protein annotation | Q36434599 | ||
| Genetic regulation of nitrogen metabolism in the fungi. | Q36574195 | ||
| Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes? | Q36610695 | ||
| Steady-state and dynamic gene expression programs in Saccharomyces cerevisiae in response to variation in environmental nitrogen | Q36798633 | ||
| Maturation and degradation of RNA in bacteria | Q36845548 | ||
| Nitrogen deposition may enhance soil carbon storage via change of soil respiration dynamic during a spring freeze-thaw cycle period | Q37054431 | ||
| Deciphering the Principles of Bacterial Nitrogen Dietary Preferences: a Strategy for Nutrient Containment | Q37120249 | ||
| Systems biology: the elements and principles of life | Q37632672 | ||
| The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). | Q37661996 | ||
| Common patterns - unique features: nitrogen metabolism and regulation in Gram-positive bacteria | Q37718878 | ||
| A thready affair: linking fungal diversity and community dynamics to terrestrial decomposition processes | Q38043508 | ||
| Differential analysis of RNA-seq incorporating quantification uncertainty | Q38743889 | ||
| Expression patterns of elemental cycling genes in the Amazon River Plume. | Q38848180 | ||
| Ribosomal RNA gene detection and targeted culture of novel nitrogen-responsive fungal taxa from temperate pine forest soil | Q39398144 | ||
| Microbial responses to long-term N deposition in a semiarid grassland. | Q39495177 | ||
| Re-assessment of plant carbon dynamics at the Duke free-air CO(2) enrichment site: interactions of atmospheric [CO(2)] with nitrogen and water availability over stand development | Q39931699 | ||
| MetaQUAST: evaluation of metagenome assemblies | Q40267042 | ||
| MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph | Q41546434 | ||
| Field and lab conditions alter microbial enzyme and biomass dynamics driving decomposition of the same leaf litter | Q41884953 | ||
| Ocean biogeochemistry modeled with emergent trait-based genomics | Q46250698 | ||
| Nitrogen additions and microbial biomass: a meta-analysis of ecosystem studies | Q46379202 | ||
| Contrasting soil fungal community responses to experimental nitrogen addition using the large subunit rRNA taxonomic marker and cellobiohydrolase I functional marker | Q46864755 | ||
| Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients. | Q47124114 | ||
| Molecular analysis of fungal communities and laccase genes in decomposing litter reveals differences among forest types but no impact of nitrogen deposition | Q48079776 | ||
| Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology. | Q51157423 | ||
| Systems biology may work when we learn to understand the parts in terms of the whole. | Q53296172 | ||
| Thermodynamics of the control of metabolism | Q69021473 | ||
| Competition for nitrogen between plants and soil microorganisms | Q83212981 | ||
| Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil | Q84209839 | ||
| P433 | issue | 15 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | pine forest | Q1740919 |
| biotechnology | Q7108 | ||
| forest soil | Q116367366 | ||
| P577 | publication date | 2018-07-17 | |
| P1433 | published in | Applied and Environmental Microbiology | Q4781593 |
| P1476 | title | Short-Term Transcriptional Response of Microbial Communities to Nitrogen Fertilization in a Pine Forest Soil | |
| P478 | volume | 84 |
| Q57817527 | Chronic Physical Disturbance Substantially Alters the Response of Biological Soil Crusts to a Wetting Pulse, as Characterized by Metatranscriptomic Sequencing |
| Q111627821 | Darksidea phi , sp. nov., a dark septate root-associated fungus in foundation grasses in North American Great Plains |
| Q90265225 | Soil Metatranscriptomes Under Long-Term Experimental Warming and Drying: Fungi Allocate Resources to Cell Metabolic Maintenance Rather Than Decay |
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