Ecological and Evolutionary Processes Shaping Viral Genetic Diversity

scientific article published on 05 March 2019

Ecological and Evolutionary Processes Shaping Viral Genetic Diversity is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P356DOI10.3390/V11030220
P932PMC publication ID6466605
P698PubMed publication ID30841497

P50authorPhiline G D FeulnerQ84160771
Lutz BecksQ46242723
P2093author name stringCas Retel
Hanna Märkle
P2860cites workThe ancient Virus World and evolution of cellsQ21093198
Sexual reproduction as an adaptation to resist parasites (a review)Q22066201
Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variationQ22122006
Generalized population models and the nature of genetic driftQ22162499
HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populationsQ22242275
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreakQ23000449
The effect of deleterious mutations on neutral molecular variationQ24532876
The probability of fixation in populations of changing size.Q24533249
On the probability of fixation of mutant genes in a populationQ24533316
The evolutionary advantage of recombinationQ24533419
Rates of spontaneous mutationQ24548000
Viral mutation ratesQ24611162
Host-parasite coevolution: why changing population size mattersQ26751048
The evolution and genetics of virus host shiftsQ27004307
Background selection 20 years on: the Wilhelmine E. Key 2012 invitational lectureQ27027745
Growth of an RNA virus in single cells reveals a broad fitness distributionQ27488296
The hitch-hiking effect of a favourable geneQ28241578
Viruses in the seaQ28272293
Prevalence of epistasis in the evolution of influenza A surface proteinsQ28477179
Loss and recovery of genetic diversity in adapting populations of HIVQ28539052
Influenza virus drug resistance: a time-sampled population genetics perspectiveQ28540172
Molecular signatures of natural selectionQ29614731
THE RELATION OF RECOMBINATION TO MUTATIONAL ADVANCEQ29616118
Rates of evolutionary change in viruses: patterns and determinantsQ29616174
The "hitchhiking effect" revisitedQ30004196
The potential for respiratory droplet-transmissible A/H5N1 influenza virus to evolve in a mammalian hostQ30418377
Detecting natural selection in genomic dataQ30701255
The ecogenetic link between demography and evolution: can we bridge the gap between theory and data?Q31120271
Balancing selection and its effects on sequences in nearby genome regionsQ33242822
Host-parasite 'Red Queen' dynamics archived in pond sedimentQ33305626
Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future DirectionsQ33760308
Host-parasite fluctuating selection in the absence of specificity.Q51169886
Revised time scales of RNA virus evolution based on spatial information.Q51186853
Navigating the devious course of evolution: the importance of mechanistic models for identifying eco-evolutionary dynamics in nature.Q51226496
Host coevolution alters the adaptive landscape of a virus.Q51263540
Population mixing promotes arms race host-parasite coevolution.Q51391546
The functional genomics of an eco-evolutionary feedback loop: linking gene expression, trait evolution, and community dynamics.Q51568738
Explaining microbial population genomics through phage predation.Q51647339
Rapid evolution buffers ecosystem impacts of viruses in a microbial food web.Q51683103
When is correlation coevolution?Q51712100
The dynamics of reciprocal selective sweeps of host resistance and a parasite counter-adaptation in Drosophila.Q52752558
Genetic basis of infectivity evolution in a bacteriophage.Q53451276
Population size changes and selection drive patterns of parallel evolution in a host-virus system.Q54226446
The fate of competing beneficial mutations in an asexual population.Q54262235
Reversed predator–prey cycles are driven by the amplitude of prey oscillations.Q55514939
A systems analysis of mutational effects in HIV-1 protease and reverse transcriptaseQ56930202
Investigation of recombination-intense viral groups and their genes in the Earth's viromeQ57987661
THE EVOLUTION OF SPECIFICITY IN EVOLVING AND COEVOLVING ANTAGONISTIC INTERACTIONS BETWEEN A BACTERIA AND ITS PHAGEQ58493825
Why Are Algal Viruses Not Always Successful?Q58762442
Collective properties of viral infectivityQ59356748
Two-way mixed-effects methods for joint association analysis using both host and pathogen genomesQ60141136
The genomic basis of Red Queen dynamics during rapid reciprocal host-pathogen coevolutionQ61453655
Co-adaptation of Escherichia coli and coliphage lambda vir in continuous cultureQ68189679
Virulence and local adaptation of a horizontally transmitted parasiteQ81186471
WHEN IS IT COEVOLUTION?Q88207596
Prisoners of war - host adaptation and its constraints on virus evolutionQ90288085
Experimental Studies of Evolutionary Dynamics in MicrobesQ90345321
Eco-evolutionary feedbacks promote fluctuating selection and long-term stability of antagonistic networks.Q51147361
A Genome-Wide Association Study for Host Resistance to Ostreid Herpesvirus in Pacific Oysters (Crassostrea gigas).Q51151743
Marine viruses and global climate changeQ33785216
Contrasted coevolutionary dynamics between a bacterial pathogen and its bacteriophagesQ34002414
Biological and biomedical implications of the co-evolution of pathogens and their hostsQ34161540
Repeatability and contingency in the evolution of a key innovation in phage lambdaQ34250057
The speed of evolution and maintenance of variation in asexual populationsQ34330675
Effects of patch connectivity and heterogeneity on metacommunity structure of planktonic bacteria and virusesQ34487688
Redefining the invertebrate RNA virosphereQ34545653
Rapid intrahost evolution of human cytomegalovirus is shaped by demography and positive selection.Q35004492
Phages in natureQ35029210
Lotka-Volterra dynamics kills the Red Queen: population size fluctuations and associated stochasticity dramatically change host-parasite coevolutionQ35046833
Genetic diversity in the interference selection limit.Q35133316
Genetic variation and the fate of beneficial mutations in asexual populationsQ35222738
MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years?Q35592157
Spatial structure, transmission modes and the evolution of viral exploitation strategies.Q35610811
Emergent neutrality in adaptive asexual evolutionQ35620493
The Role of Human Transportation Networks in Mediating the Genetic Structure of Seasonal Influenza in the United StatesQ35666991
Host-parasite coevolution in populations of constant and variable size.Q35792334
Rapid diversification of coevolving marine Synechococcus and a virusQ35849681
Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulationQ35871701
Limits and patterns of cytomegalovirus genomic diversity in humansQ35910248
Clonal interference in large populationsQ36156834
Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiaeQ36391958
What Can Phages Tell Us about Host-Pathogen Coevolution?Q36424693
On the relative roles of background selection and genetic hitchhiking in shaping human cytomegalovirus genetic diversityQ36446794
Ecological dynamics of the toxic bloom-forming cyanobacterium Microcystis aeruginosa and its cyanophages in freshwaterQ36672664
Rates and mechanisms of bacterial mutagenesis from maximum-depth sequencingQ37083023
The dynamics of genetic draft in rapidly adapting populationsQ37269691
Rapidly evolving genes in pathogens: methods for detecting positive selection and examples among fungi, bacteria, viruses and protistsQ37482440
Recent progress in polymorphism-based population genetic inferenceQ37975940
Application of next-generation sequencing technologies in virologyQ38014611
Understanding bacteriophage specificity in natural microbial communitiesQ38088146
Antagonistic coevolution of marine planktonic viruses and their hosts.Q38132444
Thinking too positive? Revisiting current methods of population genetic selection inferenceQ38273399
Recombination in viruses: mechanisms, methods of study, and evolutionary consequences.Q38301018
Detecting balancing selection in genomes: limits and prospects.Q38460683
Giant Viruses of Amoebae: A Journey Through Innovative Research and Paradigm ChangesQ38557072
A Balance between Inhibitor Binding and Substrate Processing Confers Influenza Drug ResistanceQ38812500
On the importance of skewed offspring distributions and background selection in virus population geneticsQ38819403
Can Population Genetics Adapt to Rapid Evolution?Q38835788
Determinants of genetic diversityQ38855952
The evolution of genetic diversityQ39289486
Bacteria-phage antagonistic coevolution in soilQ39765326
Identifying coevolving loci using interspecific genetic correlationsQ40047567
Seasonal Dynamics of Haptophytes and dsDNA Algal Viruses Suggest Complex Virus-Host RelationshipQ40234940
The consequences of not accounting for background selection in demographic inferenceQ40513900
Long-term genomic coevolution of host-parasite interaction in the natural environmentQ41107854
Host-parasite coevolutionary dynamics with generalized success/failure infection geneticsQ41293202
Antagonistic coevolution accelerates molecular evolutionQ41813977
Coalescence times and FST under a skewed offspring distribution among individuals in a populationQ41882306
Rapid evolution of hosts begets species diversity at the cost of intraspecific diversityQ41925309
Eco-evolutionary dynamics in a coevolving host-virus systemQ45338137
Growth cycle of a virus, PBCV-1, that infects Chlorella-like algaeQ45393119
Disentangling eco-evolutionary dynamics of predator-prey coevolution: the case of antiphase cyclesQ46246186
Understanding the limits to generalizability of experimental evolutionary modelsQ46554772
Keeping Pace with the Red Queen: Identifying the Genetic Basis of Susceptibility to Infectious Disease.Q47336884
Joint coevolutionary-epidemiological models dampen Red Queen cycles and alter conditions for epidemicsQ47570016
A clash of ideas - the varying uses of the 'species' term in virology and their utility for classifying viruses in metagenomic datasets.Q49838803
P275copyright licenseCreative Commons AttributionQ6905323
P6216copyright statuscopyrightedQ50423863
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectinfectious diseaseQ18123741
genetic diversityQ585259
molecular evolutionQ856529
host microbial interactionQ68260314
P6104maintained by WikiProjectWikiProject EcologyQ10818384
P304page(s)220
P577publication date2019-03-05
P1433published inVirusesQ7935305
P1476titleEcological and Evolutionary Processes Shaping Viral Genetic Diversity
P478volume11

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