Update on cpnDB: a reference database of chaperonin sequences

scientific article published on 01 January 2019

Update on cpnDB: a reference database of chaperonin sequences is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/biodb/VancurenH19
P356DOI10.1093/DATABASE/BAZ033
P932PMC publication ID6395794
P698PubMed publication ID30820575

P50authorJanet E. HillQ46814559
P2093author name stringSarah J Vancuren
P2860cites workResolution of Phenotypically Distinct Strains of Enterococcus spp. in a Complex Microbial Community Using cpn60 Universal Target SequencingQ58383212
Mesosutterella multiformis gen. nov., sp. nov., a member of the family Sutterellaceae and Sutterella megalosphaeroides sp. nov., isolated from human faecesQ58610606
PubCrawler: keeping up comfortably with PubMed and GenBankQ22242848
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Identification of Enterococcus species and phenotypically similar Lactococcus and Vagococcus species by reverse checkerboard hybridization to chaperonin 60 gene sequencesQ24550840
Improved tools for biological sequence comparisonQ24652199
Biological identifications through DNA barcodesQ24669741
Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studiesQ24676105
Clustal W and Clustal X version 2.0Q27860517
BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org)Q27860883
The chaperonin-60 universal target is a barcode for bacteria that enables de novo assembly of metagenomic sequence dataQ30578735
Ribosomal Database Project: data and tools for high throughput rRNA analysisQ30703827
Effects of transgenic hybrid aspen overexpressing polyphenol oxidase on rhizosphere diversityQ33343528
Prevotella aurantiaca sp. nov., isolated from the human oral cavityQ33490364
A 'universal' type II chaperonin PCR detection system for the investigation of Archaea in complex microbial communitiesQ33966874
Streptococcus suis serotypes characterized by analysis of chaperonin 60 gene sequencesQ33990529
Two families of chaperonin: physiology and mechanismQ34004042
Resolution and characterization of distinct cpn60-based subgroups of Gardnerella vaginalis in the vaginal microbiotaQ34382726
A Study of the Vaginal Microbiome in Healthy Canadian Women Utilizing cpn60-Based Molecular Profiling Reveals Distinct Gardnerella Subgroup Community State TypesQ35743671
Gardnerella vaginalis Subgroups Defined by cpn60 Sequencing and Sialidase Activity in Isolates from Canada, Belgium and KenyaQ35889942
HSP60 gene sequences as universal targets for microbial species identification: studies with coagulase-negative staphylococciQ36529720
Identification of Staphylococcus species and subspecies by the chaperonin 60 gene identification method and reverse checkerboard hybridizationQ36547990
cpnDB: a chaperonin sequence databaseQ37389208
Multiplex detection of bacteria associated with normal microbiota and with bacterial vaginosis in vaginal swabs by use of oligonucleotide-coupled fluorescent microspheresQ37451809
Comparative Genomics of cpn60-Defined Enterococcus hirae Ecotypes and Relationship of Gene Content Differences to Competitive FitnessQ40322863
The vaginal microbiome of pregnant women is less rich and diverse, with lower prevalence of Mollicutes, compared to non-pregnant womenQ41503838
Development of cpn60-based real-time quantitative PCR assays for the detection of 14 Campylobacter species and application to screening of canine fecal samplesQ41788279
Microbial communities in low permeability, high pH uranium mine tailings: characterization and potential effectsQ43691360
Predicting relatedness of bacterial genomes using the chaperonin-60 universal target (cpn60 UT): application to Thermoanaerobacter speciesQ43853769
Usefulness of the hsp60 gene for the identification and classification of Gram-negative anaerobic rodsQ43936149
Gene sequences useful for predicting relatedness of whole genomes in bacteriaQ45315668
Identification of pathogenic Helicobacter species by chaperonin-60 differentiation on plastic DNA arraysQ46814480
Identification of Campylobacter spp. and discrimination from Helicobacter and Arcobacter spp. by direct sequencing of PCR-amplified cpn60 sequences and comparison to cpnDB, a chaperonin reference sequence databaseQ48096436
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P921main subjectdatabaseQ8513
P577publication date2019-01-01
P1433published inDatabaseQ5227381
P1476titleUpdate on cpnDB: a reference database of chaperonin sequences
P478volume2019

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cites work (P2860)
Q92538282Quantification of Human Oral and Fecal Streptococcus parasanguinis by Use of Quantitative Real-Time PCR Targeting the groEL Gene
Q90131569Resolution and Cooccurrence Patterns of Gardnerella leopoldii, G. swidsinskii, G. piotii, and G. vaginalis within the Vaginal Microbiome

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