BioJava 5: A community driven open-source bioinformatics library

scientific article published on 08 February 2019

BioJava 5: A community driven open-source bioinformatics library is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/ploscb/LafitaBPGRBPMVH19
P356DOI10.1371/JOURNAL.PCBI.1006791
P932PMC publication ID6383946
P698PubMed publication ID30735498

P50authorAnthony R BradleyQ57155803
Michael HeuerQ89558898
Yana ValasatavaQ91420470
Matt LarsonQ91420473
Aleix LafitaQ53104377
Douglas Myers-TurnbullQ56876111
Spencer E. BlivenQ28946155
Peter W. RoseQ30361666
Jose M. DuarteQ30503180
P2093author name stringStephen K Burley
Dmytro Guzenko
Andreas Prlić
Paolo Pavan
P2860cites workAltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAsQ36236754
Towards an efficient compression of 3D coordinates of macromolecular structuresQ36330268
CloudPhylo: a fast and scalable tool for phylogeny reconstructionQ38973893
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical educationQ42699028
A new algorithm for the alignment of multiple protein structures using Monte Carlo optimization.Q43550441
Assessment of protein assembly prediction in CASP12.Q46521126
G2S: A web-service for annotating genomic variants on 3D protein structures.Q49553212
Automated evaluation of quaternary structures from protein crystals.Q54941715
Bioconductor: open software development for computational biology and bioinformaticsQ21194861
phyloXML: XML for evolutionary biology and comparative genomicsQ21284370
BioJava: an open-source framework for bioinformatics in 2012Q24630147
Biopython: freely available Python tools for computational molecular biology and bioinformaticsQ24643426
BioJava: an open-source framework for bioinformaticsQ24654080
The Bioperl toolkit: Perl modules for the life sciencesQ24682183
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical featuresQ27860675
Environment and exposure to solvent of protein atoms. Lysozyme and insulinQ28245387
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank.Q33459139
MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structuresQ33807098
HDX workbench: software for the analysis of H/D exchange MS dataQ34301944
RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteinsQ34425242
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomicsQ36088542
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesJupyter notebook fileQ70357595
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectbioinformaticsQ128570
BioJavaQ1036510
open-source softwareQ1130645
modeling and simulationQ6888384
P304page(s)e1006791
P577publication date2019-02-08
P1433published inPLOS Computational BiologyQ2635829
P1476titleBioJava 5: A community driven open-source bioinformatics library
P478volume15

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cites work (P2860)
Q100946063Automatic construction of molecular similarity networks for visual graph mining in chemical space of bioactive peptides: an unsupervised learning approach
Q98460830BMT: Bioinformatics mini toolbox for comprehensive DNA and protein analysis
Q91768536StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map
Q113227793The pdb2sql Python Package: Parsing, Manipulation and Analysis of PDB Files Using SQL Queries
Q89653405atomium - A Python structure parser

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