Interplay between DNA Polymerases and DNA Ligases: Influence on Substrate Channeling and the Fidelity of DNA Ligation

scientific article published on 26 April 2019

Interplay between DNA Polymerases and DNA Ligases: Influence on Substrate Channeling and the Fidelity of DNA Ligation is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.JMB.2019.04.028
P932PMC publication ID6557440
P698PubMed publication ID31034893

P2093author name stringMelike Çağlayan
P2860cites workStructural and mechanistic conservation in DNA ligasesQ22065999
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Efficiency of correct nucleotide insertion governs DNA polymerase fidelity.Q38362195
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XRCC1 polypeptide interacts with DNA polymerase beta and possibly poly (ADP-ribose) polymerase, and DNA ligase III is a novel molecular 'nick-sensor' in vitroQ39718210
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Kinetic characterization of single strand break ligation in duplex DNA by T4 DNA ligase.Q39936281
DNA ligase I mediates essential functions in mammalian cellsQ40016859
Exchangeability of mammalian DNA ligases between base excision repair pathwaysQ40508647
Mammalian DNA ligasesQ41639282
Dual mode of inhibition of purified DNA ligase I from human cells by 9-beta-D-arabinofuranosyl-2-fluoroadenine triphosphateQ41640354
Base excision repair enzyme family portrait: integrating the structure and chemistry of an entire DNA repair pathway.Q41687087
DNA Ligase IV Guides End-Processing Choice during Nonhomologous End JoiningQ42380664
The fidelity of the ligation step determines how ends are resolved during nonhomologous end joining.Q42744119
DNA ligase I and proliferating cell nuclear antigen form a functional complexQ43594136
Purification and characterization of DNA ligase III from bovine testes. Homology with DNA ligase II and vaccinia DNA ligaseQ44361047
A conserved interaction between the replicative clamp loader and DNA ligase in eukaryotes: implications for Okazaki fragment joiningQ45122208
DNA polymerase beta and flap endonuclease 1 enzymatic specificities sustain DNA synthesis for long patch base excision repairQ45345086
Role of DNA polymerase β oxidized nucleotide insertion in DNA ligation failure.Q46290686
DNA polymerase beta participates in DNA End-joining.Q47378572
Determination of the free-energy change for repair of a DNA phosphodiester bondQ47621293
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Structure-activity relationships among DNA ligase inhibitors: Characterization of a selective uncompetitive DNA ligase I inhibitorQ47872719
Kinetic analyses of single-stranded break repair by human DNA ligase III isoforms reveal biochemical differences from DNA ligase I.Q48019352
Dynamic basis for dG•dT misincorporation via tautomerization and ionization.Q50114971
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DNA ligase--a means to an end joining.Q53489164
Inhibition of human DNA ligase I activity by zinc and cadmium and the fidelity of ligation.Q55066555
Structures of DNA-bound human ligase IV catalytic core reveal insights into substrate binding and catalysis.Q55473320
XRCC4:DNA ligase IV can ligate incompatible DNA ends and can ligate across gapsQ27919707
Oxidant and environmental toxicant-induced effects compromise DNA ligation during base excision DNA repairQ28088379
Interactions of the DNA ligase IV-XRCC4 complex with DNA ends and the DNA-dependent protein kinaseQ28138342
DNA double-strand breaks: signaling, repair and the cancer connectionQ28204231
Activities and mechanism of DNA polymerase betaQ28247869
Repair of double-strand DNA breaks by the human nonhomologous DNA end joining pathway: the iterative processing modelQ28265941
Human DNA ligase I completely encircles and partially unwinds nicked DNAQ28295280
DNA ligase I null mouse cells show normal DNA repair activity but altered DNA replication and reduced genome stabilityQ28513276
Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repairQ28645603
Specific interaction of DNA polymerase beta and DNA ligase I in a multiprotein base excision repair complex from bovine testisQ28645719
Thermodynamics of human DNA ligase I trimerization and association with DNA polymerase betaQ28645732
Biochemical and Structural Characterisation of DNA Ligases from Bacteria and ArchaeaQ28822439
Single-strand break repair and genetic diseaseQ29615347
Oxidative stress, inflammation, and cancer: how are they linked?Q29616835
Differential recruitment of DNA Ligase I and III to DNA repair sitesQ33251083
Nonhomologous end joining: a good solution for bad endsQ33625010
DNA ligase I is recruited to sites of DNA replication by an interaction with proliferating cell nuclear antigen: identification of a common targeting mechanism for the assembly of replication factoriesQ33889077
Base excision repair of DNA in mammalian cellsQ33957142
DNA ligases in the repair and replication of DNA.Q34006361
Targeting DNA repair pathways for cancer treatment: what's new?Q34015040
DNA ligases: progress and prospectsQ34016787
Pol β associated complex and base excision repair factors in mouse fibroblasts.Q34033880
Elevated expression of DNA ligase I in human cancersQ34105863
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Targeting abnormal DNA double-strand break repair in tyrosine kinase inhibitor-resistant chronic myeloid leukemiasQ34277769
XRCC4 and XLF form long helical protein filaments suitable for DNA end protection and alignment to facilitate DNA double strand break repairQ34329896
Keynote: past, present, and future aspects of base excision repairQ34367323
Structure and function of the DNA ligases encoded by the mammalian LIG3 geneQ34369324
DNA ligases as therapeutic targetsQ34384677
Substrate channeling in mammalian base excision repair pathways: passing the batonQ34412541
Involvement of XRCC1 and DNA ligase III gene products in DNA base excision repair.Q34439025
Cells expressing FLT3/ITD mutations exhibit elevated repair errors generated through alternative NHEJ pathways: implications for genomic instability and therapyQ34450478
Mutagenesis and carcinogenesis caused by the oxidation of nucleic acids.Q34512398
Validation and development of MTH1 inhibitors for treatment of cancer.Q34544355
Novel Class of Potent and Cellularly Active Inhibitors Devalidates MTH1 as Broad-Spectrum Cancer TargetQ34558489
Recognition and repair of chemically heterogeneous structures at DNA endsQ35002075
Dynamic mechanism of nick recognition by DNA ligaseQ35020959
Oxidative nucleotide damage: consequences and preventionQ35026366
Mutagenic potentials of damaged nucleic acids produced by reactive oxygen/nitrogen species: approaches using synthetic oligonucleotides and nucleotides: survey and summaryQ35044983
Complementation of aprataxin deficiency by base excision repair enzymes.Q35131143
XRCC1 and DNA strand break repairQ35216366
A review of recent experiments on step-to-step "hand-off" of the DNA intermediates in mammalian base excision repair pathways.Q35282710
Repair of abasic sites in DNA.Q35592868
Mammalian DNA ligasesQ35671025
Quantitative characterization of protein-protein complexes involved in base excision DNA repairQ35842555
Oxidative DNA damage and disease: induction, repair and significanceQ35876708
Human DNA ligase III bridges two DNA ends to promote specific intermolecular DNA end joiningQ35961937
DNA ligase: getting a grip to seal the deal.Q36032009
DNA ligases: structure, reaction mechanism, and functionQ36389679
MTH1, an oxidized purine nucleoside triphosphatase, prevents the cytotoxicity and neurotoxicity of oxidized purine nucleotidesQ36452343
Ligase I and ligase III mediate the DNA double-strand break ligation in alternative end-joiningQ36563447
Continuous elimination of oxidized nucleotides is necessary to prevent rapid onset of cellular senescenceQ37068403
Location of the active site for enzyme-adenylate formation in DNA ligasesQ37369817
Identification and validation of human DNA ligase inhibitors using computer-aided drug designQ37459758
Human apurinic/apyrimidinic endonuclease 1.Q37512952
Oxidized nucleotide insertion by pol β confounds ligation during base excision repairQ37581618
Futile short-patch DNA base excision repair of adenine:8-oxoguanine mispairQ37619499
Programmed cell death triggered by nucleotide pool damage and its prevention by MutT homolog-1 (MTH1) with oxidized purine nucleoside triphosphataseQ37764544
Oxidized purine nucleotides, genome instability and neurodegenerationQ37769935
Oxidation in the nucleotide pool, the DNA damage response and cellular senescence: Defective bricks build a defective houseQ37776792
Redox control of the survival of healthy and diseased cellsQ37860340
DNA ligase I, the replicative DNA ligaseQ38037375
Human DNA ligases: a comprehensive new look for cancer therapyQ38130159
Modernizing the nonhomologous end-joining repertoire: alternative and classical NHEJ share the stage.Q38139497
Apurinic and Apyrimidinic Sites in DNAQ38162655
Vaccinia virus DNA ligase: specificity, fidelity, and inhibitionQ38288073
The mutagenic potential of non-homologous end joining in the absence of the NHEJ core factors Ku70/80, DNA-PKcs and XRCC4-LigIV.Q38303919
Role of the DNA ligase III zinc finger in polynucleotide binding and ligation.Q38332424
Kinetics and thermodynamics of nick sealing by T4 DNA ligaseQ38347969
P433issue11
P407language of work or nameEnglishQ1860
P921main subjectDNA polymeraseQ206286
DNA ligaseQ408483
P304page(s)2068-2081
P577publication date2019-04-26
P1433published inJournal of Molecular BiologyQ925779
P1476titleInterplay between DNA Polymerases and DNA Ligases: Influence on Substrate Channeling and the Fidelity of DNA Ligation
P478volume431

Reverse relations

cites work (P2860)
Q92860378Pol μ ribonucleotide insertion opposite 8-oxodG facilitates the ligation of premutagenic DNA repair intermediate
Q90095825The ligation of pol β mismatch insertion products governs the formation of promutagenic base excision DNA repair intermediates

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