Understanding microbial community dynamics to improve optimal microbiome selection.

scientific article

Understanding microbial community dynamics to improve optimal microbiome selection. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1186/S40168-019-0702-X
P932PMC publication ID6547603
P698PubMed publication ID31159875

P50authorJoseph Alexander Christie-OlezaQ56844673
Matthew I GibsonQ47165243
P2093author name stringRobyn J Wright
P2860cites workphyloseq: an R package for reproducible interactive analysis and graphics of microbiome census dataQ24288698
KEGG: kyoto encyclopedia of genes and genomesQ24515297
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The SILVA ribosomal RNA gene database project: improved data processing and web-based toolsQ29547623
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequencesQ29615050
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Nutrient recycling facilitates long-term stability of marine microbial phototroph-heterotroph interactionsQ47986517
Structural basis for chitin acquisition by marine Vibrio speciesQ48240135
Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary successionQ49789033
It Takes a Village: Microbial Communities Thrive through Interactions and Metabolic Handoffs.Q51146462
Microbial Interactions With Dissolved Organic Matter Drive Carbon Dynamics and Community Succession.Q55335246
Marine chitinolytic enzymes, a biotechnological treasure hidden in the ocean?Q57052115
Microscale ecology regulates particulate organic matter turnover in model marine microbial communitiesQ58351928
Artificial selection of microbial ecosystems for 3-chloroaniline biodegradationQ73573953
Modular Assembly of Polysaccharide-Degrading Marine Microbial CommunitiesQ91578170
Comparison of chitinolytic enzymes from an alkaline, hypersaline lake and an estuaryQ33269421
Physiological aspects of chitin catabolism in marine bacteriaQ33783705
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Biofilm exopolysaccharides: a strong and sticky frameworkQ34132041
SAR11 clade dominates ocean surface bacterioplankton communities.Q34165899
Artificial ecosystem selectionQ35196499
Microbial community structure and function on sinking particles in the North Pacific Subtropical GyreQ35622234
Bacterial chitin hydrolysis in two lakes with contrasting trophic statusesQ35688925
Levels and limits in artificial selection of communities.Q35741657
Artificial selection of simulated microbial ecosystemsQ35829114
Heritability at the ecosystem levelQ36110989
Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineageQ36116350
Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific GyreQ36185166
KEGG as a reference resource for gene and protein annotationQ36434599
Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populationsQ36471250
Bacterial chitinolytic communities respond to chitin and pH alteration in soilQ36506014
Bacterial chitin degradation-mechanisms and ecophysiological strategies.Q36928697
Microbial interactions lead to rapid micro-scale successions on model marine particlesQ37024222
Design and Evaluation of Illumina MiSeq-Compatible, 18S rRNA Gene-Specific Primers for Improved Characterization of Mixed Phototrophic CommunitiesQ37287114
Understanding Microbial Divisions of LaborQ37521310
Growth on Chitin Impacts the Transcriptome and Metabolite Profiles of Antibiotic-Producing Vibrio coralliilyticus S2052 and Photobacterium galatheae S2753.Q37553917
KEGG: new perspectives on genomes, pathways, diseases and drugsQ37556832
The importance of chitin in the marine environmentQ37878955
Widespread N-acetyl-D-glucosamine uptake among pelagic marine bacteria and its ecological implications.Q39124024
Dynamics of microbial communities on marine snow aggregates: colonization, growth, detachment, and grazing mortality of attached bacteria.Q39125309
Cooperation in microbial communities and their biotechnological applications.Q39266251
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Chitinolytic enzymes: an explorationQ40769041
Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis TestingQ41474970
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.Q42160739
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.Q45973674
Soil microbial communities drive the resistance of ecosystem multifunctionality to global change in drylands across the globeQ46305114
Grazing resistant freshwater bacteria profit from chitin and cell-wall-derived organic carbonQ46828121
P4510describes a project that usesggplot2Q326489
scikit-learnQ1026367
dplyrQ104854189
phyloseqQ106407822
ggtreeQ112338735
P433issue1
P921main subjectcommunity dynamicsQ121886851
P304page(s)85
P577publication date2019-06-03
P1433published inMicrobiomeQ27725102
P1476titleUnderstanding microbial community dynamics to improve optimal microbiome selection.
P478volume7

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cites work (P2860)
Q101166493Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere
Q95608353IDseq – An Open Source Cloud-based Pipeline and Analysis Service for Metagenomic Pathogen Detection and Monitoring
Q92370963Plasticizer Degradation by Marine Bacterial Isolates: A Proteogenomic and Metabolomic Characterization
Q93013409Simulations reveal challenges to artificial community selection and possible strategies for success
Q90571692Understanding the evolution of interspecies interactions in microbial communities

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