ImageJ SurfCut: a user-friendly pipeline for high-throughput extraction of cell contours from 3D image stacks.

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ImageJ SurfCut: a user-friendly pipeline for high-throughput extraction of cell contours from 3D image stacks. is …
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scholarly articleQ13442814

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P356DOI10.1186/S12915-019-0657-1
P932PMC publication ID6509810
P698PubMed publication ID31072374

P50authorMarion LouveauxQ86855006
Stéphane VergerQ87064072
P2093author name stringOlivier Hamant
Özer Erguvan
P2860cites workA computational framework for 3D mechanical modeling of plant morphogenesis with cellular resolutionQ27320492
Fiji: an open-source platform for biological-image analysisQ27860912
Genetic control of surface curvatureQ28212773
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJQ28364422
FibrilTool, an ImageJ plug-in to quantify fibrillar structures in raw microscopy imagesQ28364523
Growth of the plant cell wallQ29616250
The leaf index: heteroblasty, natural variation, and the genetic control of polar processes of leaf expansionQ30834487
A protocol to analyse cellular dynamics during plant development.Q33229677
Arabidopsis interdigitating cell growth requires two antagonistic pathways with opposing action on cell morphogenesisQ33340981
Quantitative analyses of cell division in plants.Q33342687
Morphometrics of complex cell shapes: lobe contribution elliptic Fourier analysis (LOCO-EFA).Q51740137
A tension-adhesion feedback loop in plant epidermis.Q55350725
An Image Analysis Pipeline to Quantify Emerging Cracks in Materials or Adhesion Defects in Living TissuesQ58581940
LSM-W: laser scanning microscopy worker for wheat leaf surface morphologyQ64061130
A GFP-MAP4 reporter gene for visualizing cortical microtubule rearrangements in living epidermal cellsQ95441183
ggplot2Q108685692
Flowering and apical meristem growth dynamicsQ33345177
Turning a plant tissue into a living cell froth through isotropic growthQ33347077
MorphoGraphX: A platform for quantifying morphogenesis in 4DQ35574746
Anisotropic expansion of the plant cell wallQ36280315
Moving with the flow: what transport laws reveal about cell division and expansionQ36345721
The genetics of geometryQ37414821
Subcellular and supracellular mechanical stress prescribes cytoskeleton behavior in Arabidopsis cotyledon pavement cellsQ37700557
Systems analysis of auxin transport in the Arabidopsis root apexQ38890811
Smooth 2D manifold extraction from 3D image stackQ40953661
QUASIMODO1 encodes a putative membrane-bound glycosyltransferase required for normal pectin synthesis and cell adhesion in ArabidopsisQ44170759
PaCeQuant: A Tool for High-Throughput Quantification of Pavement Cell Shape Characteristics.Q46303799
Mechanochemical Polarization of Contiguous Cell Walls Shapes Plant Pavement Cells.Q47616791
Mechanism for Plant Cellular MorphogenesisQ47893864
Why plants make puzzle cells, and how their shape emerges.Q50421811
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesggplot2Q326489
ImageJQ1659584
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectImageJQ1659584
P6104maintained by WikiProjectWikiProject SoftwareQ15659621
P304page(s)38
P577publication date2019-05-09
P1433published inBMC BiologyQ2545642
P1476titleImageJ SurfCut: a user-friendly pipeline for high-throughput extraction of cell contours from 3D image stacks
P478volume17

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cites work (P2860)
Q112080892A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis
Q112080855LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images
Q99208945Long-term live-cell imaging techniques for visualizing pavement cell morphogenesis
Q90310882Microtubule Response to Tensile Stress Is Curbed by NEK6 to Buffer Growth Variation in the Arabidopsis Hypocotyl
Q98727194Net, skin and flatten, ImageJ plugin tool for extracting surface profiles from curved 3D objects

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