Sequence and positional requirements for DNA sites in a mu transpososome

scientific article published on 27 December 2001

Sequence and positional requirements for DNA sites in a mu transpososome is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1074/JBC.M110342200
P698PubMed publication ID11756424

P2093author name stringTania A Baker
Ilana Goldhaber-Gordon
Michael H Early
Matthew K Gray
P2860cites workCrystal structure of the human Pax6 paired domain-DNA complex reveals specific roles for the linker region and carboxy-terminal subdomain in DNA bindingQ27618361
Three-dimensional structure of the Tn5 synaptic complex transposition intermediateQ27625249
Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integrationQ27729788
A novel class of winged helix-turn-helix protein: the DNA-binding domain of Mu transposaseQ27730402
Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helicesQ27730748
Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modulesQ27731280
Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibilityQ27734673
Solution structure of the I gamma subdomain of the Mu end DNA-binding domain of phage Mu transposaseQ27747272
Isoforms of hepatocyte nuclear factor-6 differ in DNA-binding properties, contain a bifunctional homeodomain, and define the new ONECUT class of homeodomain proteinsQ28577680
Spacing and orientation of bipartite DNA-binding motifs as potential functional determinants for POU domain factorsQ28580672
Integrating DNA: transposases and retroviral integrasesQ33765939
Solution structure of the Mu end DNA-binding ibeta subdomain of phage Mu transposase: modular DNA recognition by two tethered domains.Q33887936
The same two monomers within a MuA tetramer provide the DDE domains for the strand cleavage and strand transfer steps of transpositionQ33889071
An ATP-ADP switch in MuB controls progression of the Mu transposition pathwayQ33889534
Sequence specificity of viral end DNA binding by HIV-1 integrase reveals critical regions for protein-DNA interactionQ33889660
Evolutionary fates and origins of U12-type introns.Q34487062
B protein of bacteriophage mu is an ATPase that preferentially stimulates intermolecular DNA strand transferQ34592290
Structural domains in phage Mu transposase: identification of the site-specific DNA-binding domainQ34607774
Organization and dynamics of the Mu transpososome: recombination by communication between two active sitesQ35208441
Isolation of point mutations in bacteriophage Mu attachment regions cloned in a lambda::mini-Mu phageQ37394953
DNase protection analysis of the stable synaptic complexes involved in Mu transpositionQ37605009
SfiI endonuclease activity is strongly influenced by the non-specific sequence in the middle of its recognition siteQ38302971
Specificity from the synapsis of DNA elements by the Sfi I endonucleaseQ38323728
DNA-promoted assembly of the active tetramer of the Mu transposaseQ38324963
The POU domain: versatility in transcriptional regulation by a flexible two-in-one DNA-binding domain.Q40452230
Allosteric effects of Pit-1 DNA sites on long-term repression in cell type specificationQ40843110
Transposon Tn7.Q40942859
Tn10 and IS10 transposition and chromosome rearrangements: mechanism and regulation in vivo and in vitro.Q40942864
Cleaving DNA at any predetermined site with adapter-primers and class-IIS restriction enzymesQ43569455
Site-specific recognition of the bacteriophage mu ends by the mu a proteinQ48385604
Analysis of the ends of bacteriophage Mu using site-directed mutagenesisQ58018717
Transpososomes: Stable protein-DNA complexes involved in the in vitro transposition of bacteriophage Mu DNAQ61827050
Assembly of the active form of the transposase-Mu DNA complex: a critical control point in Mu transpositionQ67492932
Division of labor among monomers within the Mu transposase tetramerQ70471720
Oct-1 POU domain-DNA interactions: cooperative binding of isolated subdomains and effects of covalent linkageQ70888685
The interwoven architecture of the Mu transposase couples DNA synapsis to catalysisQ71032186
Mu transpositional recombination: donor DNA cleavage and strand transfer in trans by the Mu transposaseQ71032193
Three-site synapsis during Mu DNA transposition: a critical intermediate preceding engagement of the active siteQ71046945
Target site selection in transposition of phage MuQ72794146
Sequence-dependent DNA structure: dinucleotide conformational mapsQ73329866
Effect of mutations in the Mu-host junction region on transpososome assemblyQ74106307
DNA recognition sites activate MuA transposase to perform transposition of non-Mu DNAQ77387604
Importance of the conserved CA dinucleotide at Mu terminiQ77642670
P433issue10
P407language of work or nameEnglishQ1860
P1104number of pages10
P304page(s)7703-7712
P577publication date2001-12-27
P1433published inJournal of Biological ChemistryQ867727
P1476titleSequence and positional requirements for DNA sites in a mu transpososome
P478volume277

Reverse relations

cites work (P2860)
Q337360813D reconstruction of the Mu transposase and the Type 1 transpososome: a structural framework for Mu DNA transposition
Q34986589A 'resource allocator' for transcription based on a highly fragmented T7 RNA polymerase.
Q34666794Characteristics of MuA transposase-catalyzed processing of model transposon end DNA hairpin substrates.
Q77387604DNA recognition sites activate MuA transposase to perform transposition of non-Mu DNA
Q34292691Flexibility in MuA transposase family protein structures: functional mapping with scanning mutagenesis and sequence alignment of protein homologues
Q44719484Functional comparison of the transposition core machineries of phage Mu and Haemophilus influenzae Mu-like prophage Hin-Mu reveals interchangeable components.
Q34539634Mobility properties of the Hermes transposable element in transgenic lines of Aedes aegypti
Q44456263Mu transpososome architecture ensures that unfolding by ClpX or proteolysis by ClpXP remodels but does not destroy the complex
Q45015768Progressive structural transitions within Mu transpositional complexes
Q78723573Target immunity during Mu DNA transposition. Transpososome assembly and DNA looping enhance MuA-mediated disassembly of the MuB target complex
Q35956927The Structure of a Thermophilic Kinase Shapes Fitness upon Random Circular Permutation
Q35801161Transposable Phage Mu

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