Genome-wide identification, sequence characterization, and protein-protein interaction properties of DDB1 (damaged DNA binding protein-1)-binding WD40-repeat family members in Solanum lycopersicum

scientific article published on 14 February 2015

Genome-wide identification, sequence characterization, and protein-protein interaction properties of DDB1 (damaged DNA binding protein-1)-binding WD40-repeat family members in Solanum lycopersicum is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1044709075
P356DOI10.1007/S00425-015-2258-8
P698PubMed publication ID25680350

P2093author name stringMin Miao
Yongsheng Liu
Wenjie Wang
Junyang Yue
Xiaofeng Tang
Shengxiong Huang
Yunye Zhu
P2860cites workThe tomato genome sequence provides insights into fleshy fruit evolutionQ22122151
A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1Q24301361
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Expression of a plant gene with sequence similarity to animal TGF-beta receptor interacting protein is regulated by brassinosteroids and required for normal plant developmentQ43612741
The tomato DWD motif-containing protein DDI1 interacts with the CUL4-DDB1-based ubiquitin ligase and plays a pivotal role in abiotic stress responsesQ44538963
The tomato homolog of the gene encoding UV-damaged DNA binding protein 1 (DDB1) underlined as the gene that causes the high pigment-1 mutant phenotypeQ44767300
Altered plastid levels and potential for improved fruit nutrient content by downregulation of the tomato DDB1-interacting protein CUL4.Q46684600
Arabidopsis cop8 and fus4 mutations define the same gene that encodes subunit 4 of the COP9 signalosome.Q52173966
Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.Q54353382
The DDB1a interacting proteins ATCSA-1 and DDB2 are critical factors for UV-B tolerance and genomic integrity in Arabidopsis thalianaQ82767706
The tomato UV‐damaged DNA‐binding protein‐1 (DDB1) is implicated in pathogenesis‐related (PR) gene expression and resistance to Agrobacterium tumefaciensQ84500317
Structural Basis for the Recognition of Histone H4 by the Histone-Chaperone RbAp46Q27650923
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Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifsQ27934845
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A Method for WD40 Repeat Detection and Secondary Structure PredictionQ30432071
Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligasesQ31144227
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thalianaQ33801141
Genome-wide analysis of WRKY gene family in Cucumis sativusQ34034250
Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formationQ34064092
Identifying the Hotspots on the Top Faces of WD40-Repeat Proteins from Their Primary Sequences by β-Bulges and DHSW TetradsQ34391209
A Role of Tomato UV-Damaged DNA Binding Protein 1 (DDB1) in Organ Size Control via an Epigenetic MannerQ34395529
The Arabidopsis CUL4-DDB1 complex interacts with MSI1 and is required to maintain MEDEA parental imprinting.Q34587217
MSI4/FVE interacts with CUL4-DDB1 and a PRC2-like complex to control epigenetic regulation of flowering time in Arabidopsis.Q34602692
Genetic Analysis of Early Flowering Mutants in Arabidopsis Defines a Class of Pleiotropic Developmental Regulator Required for Expression of the Flowering-Time Switch Flowering Locus CQ34617678
Structural assembly of cullin-RING ubiquitin ligase complexesQ34762436
The ubiquitin/26S proteasome pathway, the complex last chapter in the life of many plant proteinsQ35093947
DDB1 functions as a linker to recruit receptor WD40 proteins to CUL4-ROC1 ubiquitin ligasesQ35106169
Manipulation of light signal transduction as a means of modifying fruit nutritional quality in tomatoQ36449370
PGDD: a database of gene and genome duplication in plantsQ36491514
Roles of UV-damaged DNA binding protein 1 (DDB1) in epigenetically modifying multiple traits of agronomic importance in tomatoQ36628165
CRL4s: the CUL4-RING E3 ubiquitin ligasesQ37440298
The ubiquitin-26S proteasome system at the nexus of plant biologyQ37474364
WD40 and CUL4-based E3 ligases: lubricating all aspects of lifeQ37802071
DWD HYPERSENSITIVE TO UV-B 1 is negatively involved in UV-B mediated cellular responses in ArabidopsisQ38304413
Whole transcriptome sequencing reveals genes involved in plastid/chloroplast division and development are regulated by the HP1/DDB1 at an early stage of tomato fruit developmentQ38486866
Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuliQ38512733
DWA3, an Arabidopsis DWD protein, acts as a negative regulator in ABA signal transductionQ39166694
ABD1 is an Arabidopsis DCAF substrate receptor for CUL4-DDB1-based E3 ligases that acts as a negative regulator of abscisic acid signalingQ39446410
Schizosaccharomyces pombe Ddb1 recruits substrate-specific adaptor proteins through a novel protein motif, the DDB-boxQ39939479
Overexpression of UV-DAMAGED DNA BINDING PROTEIN 1 links plant development and phytonutrient accumulation in high pigment-1 tomatoQ41983834
DWA1 and DWA2, two Arabidopsis DWD protein components of CUL4-based E3 ligases, act together as negative regulators in ABA signal transductionQ43043828
P433issue6
P921main subjecttomatoQ23501
protein-protein interactionQ896177
P304page(s)1337-1350
P577publication date2015-02-14
P1433published inPlantaQ15762724
P1476titleGenome-wide identification, sequence characterization, and protein-protein interaction properties of DDB1 (damaged DNA binding protein-1)-binding WD40-repeat family members in Solanum lycopersicum
P478volume241

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cites work (P2860)
Q37519403Genome-wide Analysis of WD40 Protein Family in Human.
Q33769090Genome-wide analysis of DWD proteins in soybean (Glycine max): Significance of Gm08DWD and GmMYB176 interaction in isoflavonoid biosynthesis.

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