Fe-S Clusters and MutY Base Excision Repair Glycosylases: Purification, Kinetics, and DNA Affinity Measurements

scientific article published on 10 January 2018

Fe-S Clusters and MutY Base Excision Repair Glycosylases: Purification, Kinetics, and DNA Affinity Measurements is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/BS.MIE.2017.11.035
P932PMC publication ID6267926
P698PubMed publication ID29746241

P2093author name stringSheila S David
Chandrima Majumdar
Nicole N Nuñez
Kori T Lay
P2860cites workFunctional characterization of two human MutY homolog (hMYH) missense mutations (R227W and V232F) that lie within the putative hMSH6 binding domain and are associated with hMYH polyposisQ24801922
Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNAQ27621681
Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylaseQ27643123
Crystal Structure of the FeS Cluster–Containing Nucleotide Excision Repair Helicase XPDQ27650943
Atomic substitution reveals the structural basis for substrate adenine recognition and removal by adenine DNA glycosylaseQ27657850
A Structural Hinge in Eukaryotic MutY Homologues Mediates Catalytic Activity and Rad9–Rad1–Hus1 Checkpoint Complex InteractionsQ27664268
MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamilyQ27766319
Base-excision repair of oxidative DNA damageQ29615373
The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine)Q29619959
Structure and stereochemistry of the base excision repair glycosylase MutY reveal a mechanism similar to retaining glycosidasesQ31032369
Transition-state analysis of the DNA repair enzyme MutY.Q31151684
Electrochemistry of the [4Fe4S] Cluster in Base Excision Repair Proteins: Tuning the Redox Potential with DNA.Q33652775
Escherichia coli mutY gene product is required for specific A-G----C.G mismatch correctionQ33680797
Ser 524 is a phosphorylation site in MUTYH and Ser 524 mutations alter 8-oxoguanine (OG): A mismatch recognitionQ34172846
Efficient recognition of substrates and substrate analogs by the adenine glycosylase MutY requires the C-terminal domainQ34249739
Escherichia coli mutY gene encodes an adenine glycosylase active on G-A mispairsQ34319463
Gas-phase studies of substrates for the DNA mismatch repair enzyme MutY.Q34377569
Profiling base excision repair glycosylases with synthesized transition state analogsQ35165256
Structural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA GlycosylaseQ35837084
MutY, an adenine glycosylase active on G-A mispairs, has homology to endonuclease III.Q35848055
A role for iron-sulfur clusters in DNA repairQ36089869
Cancer-associated variants and a common polymorphism of MUTYH exhibit reduced repair of oxidative DNA damage using a GFP-based assay in mammalian cellsQ36353057
DNA-mediated charge transport for DNA repairQ36689389
DNA repair glycosylases with a [4Fe-4S] cluster: a redox cofactor for DNA-mediated charge transport?Q36864161
Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNAQ37132610
Redox signaling between DNA repair proteins for efficient lesion detectionQ37340789
Distinct functional consequences of MUTYH variants associated with colorectal cancer: Damaged DNA affinity, glycosylase activity and interaction with PCNA and Hus1.Q37397651
Adenine removal activity and bacterial complementation with the human MutY homologue (MUTYH) and Y165C, G382D, P391L and Q324R variants associated with colorectal cancerQ37464076
The [4Fe4S] cluster of human DNA primase functions as a redox switch using DNA charge transportQ37682254
Building Fe-S proteins: bacterial strategies.Q37751865
Single-turnover and pre-steady-state kinetics of the reaction of the adenine glycosylase MutY with mismatch-containing DNA substratesQ38332366
Identification of the structural and functional domains of MutY, an Escherichia coli DNA mismatch repair enzymeQ38355637
Insight into the functional consequences of inherited variants of the hMYH adenine glycosylase associated with colorectal cancer: complementation assays with hMYH variants and pre-steady-state kinetics of the corresponding mutated E.coli enzymesQ38356866
Sulfur K-Edge XAS Studies of the Effect of DNA Binding on the [Fe4S4] Site in EndoIII and MutY.Q38675374
Repair of 8-oxoG:A mismatches by the MUTYH glycosylase: Mechanism, metals and medicineQ39087831
Dispensability of the [4Fe-4S] cluster in novel homologues of adenine glycosylase MutY.Q40267970
A zinc linchpin motif in the MUTYH glycosylase interdomain connector is required for efficient repair of DNA damageQ40878567
Finding new mutator strains of Escherichia coli--a reviewQ41256968
Structure-Activity Relationships Reveal Key Features of 8-Oxoguanine: A Mismatch Detection by the MutY GlycosylaseQ41703841
A repair system for 8-oxo-7,8-dihydrodeoxyguanineQ43687308
Inherited variants of MYH associated with somatic G:C-->T:A mutations in colorectal tumorsQ43871566
Escherichia coli apurinic-apyrimidinic endonucleases enhance the turnover of the adenine glycosylase MutY with G:A substratesQ43964510
16 Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNAQ44249816
A residue in MutY important for catalysis identified by photocross-linking and mass spectrometryQ44733805
DNA-bound redox activity of DNA repair glycosylases containing [4Fe-4S] clustersQ46118094
Electrical Probes of DNA-Binding Proteins.Q46337648
Insight into the roles of tyrosine 82 and glycine 253 in the Escherichia coli adenine glycosylase MutY.Q46771307
Techniques for the production, isolation, and analysis of iron-sulfur proteinsQ50459293
Structural Basis for the Lesion-scanning Mechanism of the MutY DNA Glycosylase.Q50927527
Genetic analysis of the isc operon in Escherichia coli involved in the biogenesis of cellular iron-sulfur proteins.Q53889877
Gel retardation.Q54703956
Nature of Forces between Large Molecules of Biological Interest*Q59063408
Positively charged residues within the iron-sulfur cluster loop of E. coli MutY participate in damage recognition and removalQ74016433
A substrate recognition role for the [4Fe-4S]2+ cluster of the DNA repair glycosylase MutYQ74511045
Chemistry of Glycosylases and Endonucleases Involved in Base-Excision RepairQ77646696
Site-directed mutagenesis of the cysteine ligands to the [4Fe-4S] cluster of Escherichia coli MutYQ77828155
P304page(s)21-68
P577publication date2018-01-10
P1433published inMethods in EnzymologyQ2076903
P1476titleFe-S Clusters and MutY Base Excision Repair Glycosylases: Purification, Kinetics, and DNA Affinity Measurements
P478volume599

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cites work (P2860)
Q92093762Damage sensor role of UV-DDB during base excision repair
Q57181105The Zinc Linchpin Motif in the DNA Repair Glycosylase MUTYH: Identifying the Zn Ligands and Roles in Damage Recognition and Repair

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