| P50 | author | Greg W. Rouse | Q21391719 |
| | Danwei Huang | Q28978286 |
| | Randolph Z B Quek | Q89798360 |
| P2093 | author name string | Mei Lin Neo | |
| | Sudhanshi S Jain | |
| P2860 | cites work | A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data | Q21090004 |
| | Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria) | Q21090087 |
| | OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy | Q21146630 |
| | Using the Acropora digitifera genome to understand coral responses to environmental change | Q22122171 |
| | SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing | Q24629733 |
| | Microbes in the coral holobiont: partners through evolution, development, and ecological interactions | Q27000040 |
| | MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability | Q27860817 |
| | CAP3: A DNA sequence assembly program | Q27860964 |
| | The Sequence Alignment/Map format and SAMtools | Q27860966 |
| | Corallimorpharians are not "naked corals": insights into relationships between Scleractinia and Corallimorpharia from phylogenomic analyses | Q28597287 |
| | The Coral Trait Database, a curated database of trait information for coral species from the global oceans | Q28601761 |
| | Comparative genomics explains the evolutionary success of reef-forming corals | Q28602268 |
| | Phylogenomic Analyses Support Traditional Relationships within Cnidaria | Q28611480 |
| | Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci | Q28650841 |
| | Phylotranscriptomic analysis of the origin and early diversification of land plants | Q28652071 |
| | The future of evolutionary diversity in reef corals | Q28652385 |
| | RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies | Q28658397 |
| | A phylogeny of the family Poritidae (Cnidaria, Scleractinia) based on molecular and morphological analyses | Q28659125 |
| | The ancient evolutionary origins of Scleractinia revealed by azooxanthellate corals | Q28742217 |
| | FastTree 2--approximately maximum-likelihood trees for large alignments | Q28748616 |
| | Simulating and Summarizing Sources of Gene Tree Incongruence | Q28828415 |
| | Fast and sensitive protein alignment using DIAMOND | Q29011988 |
| | Genome-scale approaches to resolving incongruence in molecular phylogenies | Q29547249 |
| | Trimmomatic: a flexible trimmer for Illumina sequence data | Q29547278 |
| | trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses | Q29547690 |
| | PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments | Q29617502 |
| | ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees. | Q55378326 |
| | Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis | Q57139220 |
| | Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution | Q58091834 |
| | Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages | Q58616312 |
| | Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes | Q64086391 |
| | Inadvertent Paralog Inclusion Drives Artifactual Topologies and Timetree Estimates in Phylogenomics | Q64267643 |
| | Revisiting metazoan phylogeny with genomic sampling of all phyla | Q67234679 |
| | The highly cross-fertile coral species, Acropora hyacinthus and Acropora cytherea, constitute statistically distinguishable lineages | Q74528797 |
| | Effects of missing data and data type on phylotranscriptomic analysis of stony corals (Cnidaria: Anthozoa: Scleractinia) | Q91199419 |
| | MitoFinder: efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics | Q91530311 |
| | Incongruence between gene trees and species trees and phylogenetic signal variation in plastid genes | Q92406386 |
| | Phylotranscriptomics confirms Alveopora is sister to Montipora within the family Acroporidae | Q92991550 |
| | Reefgenomics.org - a repository for marine genomics data | Q31151477 |
| | Conventional taxonomy obscures deep divergence between Pacific and Atlantic corals | Q33198654 |
| | The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell | Q33578905 |
| | Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae | Q33813959 |
| | A genomic glance through the fog of plasticity and diversification in Pocillopora. | Q33920897 |
| | Threatened reef corals of the world | Q34222601 |
| | Anchored hybrid enrichment for massively high-throughput phylogenomics | Q34273260 |
| | Systematic Relationships within the Anthozoa (Cnidaria: Anthozoa) Using the 5′-end of the 28S rDNA | Q34304248 |
| | Molecular delineation of species in the coral holobiont | Q34373105 |
| | Coming of age: ten years of next-generation sequencing technologies | Q34526801 |
| | Exon capture phylogenomics: efficacy across scales of divergence. | Q35717326 |
| | An Exon-Capture System for the Entire Class Ophiuroidea | Q35810825 |
| | BaitFisher: A Software Package for Multispecies Target DNA Enrichment Probe Design | Q35968294 |
| | SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation | Q36153796 |
| | Coral hybridization or phenotypic variation? Genomic data reveal gene flow between Porites lobata and P. Compressa | Q36331246 |
| | HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment | Q37103850 |
| | Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle | Q37526094 |
| | Targeted Capture of Complete Coding Regions across Divergent Species | Q37738605 |
| | Genome-enabled development of DNA markers for ecology, evolution and conservation | Q37750930 |
| | Phylogenomic analyses of 539 highly informative loci dates a fully resolved time tree for the major clades of living turtles (Testudines). | Q38369250 |
| | New insights on the sister lineage of percomorph fishes with an anchored hybrid enrichment dataset | Q38371633 |
| | Molecular evolution of a portion of the mitochondrial 16S ribosomal gene region in scleractinian corals | Q38555935 |
| | The present and future of de novo whole-genome assembly | Q38811527 |
| | Species delimitation of common reef corals in the genus Pocillopora using nucleotide sequence phylogenies, population genetics and symbiosis ecology. | Q39285388 |
| | Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. | Q39385493 |
| | Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts | Q41834254 |
| | Examination of species boundaries in the Acropora cervicornis group (Scleractinia, cnidaria) using nuclear DNA sequence analyses | Q42632999 |
| | Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae). | Q42689324 |
| | Rethinking the phylogeny of scleractinian corals: a review of morphological and molecular data | Q44310097 |
| | Challenges in the Setup of Large-scale Next-Generation Sequencing Analysis Workflows. | Q45981891 |
| | Lobophylliidae (Cnidaria, Scleractinia) reshuffled: pervasive non-monophyly at genus level. | Q46125567 |
| | The Paradox of Environmental Symbiont Acquisition in Obligate Mutualisms | Q46197507 |
| | Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales | Q46198301 |
| | Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals | Q46240793 |
| | Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems. | Q46262797 |
| | ExaBayes: massively parallel bayesian tree inference for the whole-genome era. | Q46590705 |
| | Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding | Q48075131 |
| | DiscoVista: interpretable visualizations of gene tree discordance | Q50111729 |
| | Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. | Q55339378 |
| P921 | main subject | Anthozoa | Q28524 |
| | Cnidaria | Q25441 |
| | Scleractinia | Q195605 |
| P577 | publication date | 2020-02-20 | |
| P1433 | published in | Molecular Ecology Resources | Q15760135 |
| P1476 | title | Transcriptome-based target-enrichment baits for stony corals (Cnidaria: Anthozoa: Scleractinia) | |