Metagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea

scientific article published on 23 August 2019

Metagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea is …
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scholarly articleQ13442814

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P356DOI10.3389/FMICB.2019.01951
P932PMC publication ID6716333
P698PubMed publication ID31507563

P50authorNianzhi JiaoQ117222118
P2093author name stringLong Wang
Min Wang
Lihua Zhang
Yantao Liang
Yongyu Zhang
Kaiguang Yang
Qingwei Yang
Jiulong Zhao
Zengmeng Wang
P2860cites workThe marine viromes of four oceanic regionsQ21146032
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomesQ21284200
Virioplankton: Viruses in Aquatic EcosystemsQ22061799
Insight Into the Pico- and Nano-Phytoplankton Communities in the Deepest Biosphere, the Mariana TrenchQ57491470
IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomesQ58587028
Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environmentsQ58765774
Viral Diversity and Its Relationship With Environmental Factors at the Surface and Deep Sea of Prydz Bay, AntarcticaQ60047555
Minimum Information about an Uncultivated Virus Genome (MIUViG)Q63881023
Marine DNA Viral Macro- and Microdiversity from Pole to PoleQ64110085
Metagenomic Characterization of the Viral Community of the South Scotia RidgeQ64252660
Extremophile deep-sea viral communities from hydrothermal vents: Structural and functional analysisQ92280168
Active and diverse viruses persist in the deep sub-seafloor sediments over thousands of yearsQ92403416
Metagenomic Analysis of Virioplankton of the Subtropical Jiulong River Estuary, ChinaQ35915397
Genomes of Abundant and Widespread Viruses from the Deep OceanQ36086589
Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceansQ37049478
Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean.Q37770055
Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline.Q38053654
metaSPAdes: a new versatile metagenomic assemblerQ38905159
Salmon provides fast and bias-aware quantification of transcript expressionQ38926825
Marine cyanophages demonstrate biogeographic patterns throughout the global oceanQ39084426
Ecogenomics and potential biogeochemical impacts of globally abundant ocean virusesQ39365291
Amplification of DNA polymerase gene fragments from viruses infecting microalgaeQ39797310
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other treesQ39838204
Complete genome sequence of the siphovirus Roseophage RDJLΦ 2 infecting Roseobacter denitrificans OCh114.Q40328231
Distributions and relationships of virio- and picoplankton in the epi-, meso- and bathypelagic zones of the Western Pacific OceanQ40442915
Viruses Infecting a Freshwater Filamentous Cyanobacterium (Nostoc sp.) Encode a Functional CRISPR Array and a Proteobacterial DNA Polymerase B.Q40700754
Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomicsQ41918684
Diel cycling and long-term persistence of viruses in the ocean's euphotic zone.Q46025251
Genomic analysis of uncultured marine viral communitiesQ24540367
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
Ecology of prokaryotic virusesQ28258560
Viruses in the seaQ28272293
Plankton networks driving carbon export in the oligotrophic oceanQ28603507
Evolution of double-stranded DNA viruses of eukaryotes: from bacteriophages to transposons to giant virusesQ28649373
FastTree 2--approximately maximum-likelihood trees for large alignmentsQ28748616
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequencesQ29547172
Marine viruses--major players in the global ecosystemQ29616822
Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenomeQ30442512
Comparison of deep-water viromes from the atlantic ocean and the mediterranean seaQ31167662
Metagenomic analysis of coastal RNA virus communitiesQ33247702
Ubiquitous cyanobacterial podoviruses in the global oceans unveiled through viral DNA polymerase gene sequencesQ33576627
Phylogenetic Diversity of T4-Type Phages in Sediments from the Subtropical Pearl River EstuaryQ33702428
Single-virus genomics reveals hidden cosmopolitan and abundant virusesQ33850538
Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloningQ33926130
Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plumeQ33981180
Abundant SAR11 viruses in the ocean.Q34327674
Metagenomic exploration of viruses throughout the Indian OceanQ34451821
The Pacific Ocean virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecologyQ34612034
MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomesQ34862099
Laboratory procedures to generate viral metagenomesQ34965860
Hadal biosphere: insight into the microbial ecosystem in the deepest ocean on EarthQ35212754
Rising to the challenge: accelerated pace of discovery transforms marine virologyQ35552823
Ocean plankton. Patterns and ecological drivers of ocean viral communitiesQ35638928
VirSorter: mining viral signal from microbial genomic dataQ35650782
Pacific western boundary currents and their roles in climateQ35666781
Efficient purification and concentration of viruses from a large body of high turbidity seawaterQ35757203
Ubiquitous healthy diatoms in the deep sea confirm deep carbon injection by the biological pump.Q35877600
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P921main subjectmetagenomicsQ903778
P304page(s)1951
P577publication date2019-08-23
P1433published inFrontiers in MicrobiologyQ27723481
P1476titleMetagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea
P478volume10