| P50 | author | Ryan J Andrews | Q60299840 |
| P2093 | author name string | Sanchita Hati | |
| | Sudeep Bhattacharyya | |
| | Lauren M Adams | |
| | Heidi L Schmit | |
| | Quin H Hu | |
| P2860 | cites work | The Protein Data Bank | Q24515306 |
| | What macromolecular crowding can do to a protein | Q27012942 |
| | The 2 Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue | Q27622535 |
| | VMD: visual molecular dynamics | Q27860554 |
| | The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling | Q27860637 |
| | Scalable molecular dynamics with NAMD | Q27860718 |
| | AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR | Q27860778 |
| | Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding | Q28294869 |
| | Effects of macromolecular crowding on protein conformational changes | Q28474762 |
| | SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information | Q29615720 |
| | Aminoacyl-tRNA synthesis | Q29617527 |
| | Toward the estimation of the absolute quality of individual protein structure models | Q30397038 |
| | Effects of macromolecular crowding on alkaline phosphatase unfolding, conformation and stability | Q30400345 |
| | Urea-amide preferential interactions in water: quantitative comparison of model compound data with biopolymer results using water accessible surface areas | Q31119973 |
| | CHARMM Additive All-Atom Force Field for Glycosidic Linkages between Hexopyranoses | Q33531681 |
| | Soft interactions and crowding | Q33639701 |
| | CHARMM additive all-atom force field for glycosidic linkages in carbohydrates involving furanoses. | Q33693774 |
| | CHARMM additive all-atom force field for carbohydrate derivatives and its utility in polysaccharide and carbohydrate-protein modeling. | Q34085563 |
| | Interpretation of preferential interaction coefficients of nonelectrolytes and of electrolyte ions in terms of a two-domain model | Q34128620 |
| | Macromolecular crowding: an important but neglected aspect of the intracellular environment | Q34141548 |
| | Interactions of macromolecular crowding agents and cosolutes with small-molecule substrates: effect on horseradish peroxidase activity with two different substrates | Q34164799 |
| | The aminoacyl-tRNA synthetase family: modules at work | Q34347221 |
| | Stacking interactions between carbohydrate and protein quantified by combination of theoretical and experimental methods | Q34441077 |
| | Connecting the dots: the effects of macromolecular crowding on cell physiology. | Q34454279 |
| | Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli | Q34626779 |
| | Intrinsic tryptophan fluorescence in the detection and analysis of proteins: a focus on Förster resonance energy transfer techniques | Q34834632 |
| | A molecular mechanism for osmolyte-induced protein stability | Q35024743 |
| | Aminoacyl-tRNA synthetases and their inhibitors as a novel family of antibiotics | Q35126159 |
| | Effects of Macromolecular Crowding on Alcohol Dehydrogenase Activity Are Substrate-Dependent. | Q53600319 |
| | Effects of macromolecular crowding on the intrinsic catalytic efficiency and structure of enterobactin-specific isochorismate synthase. | Q54448038 |
| | Distinct kinetic mechanisms of the two classes of Aminoacyl-tRNA synthetases. | Q54459645 |
| | Chemical modification and site-directed mutagenesis of the single cysteine in motif 3 of class II Escherichia coli prolyl-tRNA synthetase. | Q54569246 |
| | Enthalpically driven peptide stabilization by protective osmolytes | Q55888120 |
| | Structures of Two Bacterial Prolyl-tRNA Synthetases with and without a cis-Editing Domain | Q58360598 |
| | Macromolecular Stabilization by Excluded Cosolutes: Mean Field Theory of Crowded Solutions | Q63170522 |
| | Macromolecular Crowding Tunes Protein Stability by Manipulating Solvent Accessibility. | Q64948299 |
| | Software news and updates. Carma: a molecular dynamics analysis program | Q80135906 |
| | Macromolecular crowding and protein stability | Q84941040 |
| | Role of solvent properties of aqueous media in macromolecular crowding effects | Q86588515 |
| | Macromolecular crowding effect upon in vitro enzyme kinetics: mixed activation-diffusion control of the oxidation of NADH by pyruvate catalyzed by lactate dehydrogenase | Q87503014 |
| | Crowding-Induced Elongated Conformation of Urea-Unfolded Apoazurin: Investigating the Role of Crowder Shape in Silico | Q92962738 |
| | Separation of preferential interaction and excluded volume effects on DNA duplex and hairpin stability | Q35149646 |
| | Hydrolytic editing by a class II aminoacyl-tRNA synthetase | Q35190818 |
| | Separating chemical and excluded volume interactions of polyethylene glycols with native proteins: Comparison with PEG effects on DNA helix formation | Q35798147 |
| | Role of coupled dynamics in the catalytic activity of prokaryotic-like prolyl-tRNA synthetases | Q35915716 |
| | Determination of the effective hydrodynamic radii of small molecules by viscometry | Q36373962 |
| | Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles | Q36546184 |
| | Unpacking the origins of in-cell crowding | Q36607511 |
| | Preferential exclusion of sucrose from recombinant interleukin-1 receptor antagonist: role in restricted conformational mobility and compaction of native state | Q36627343 |
| | Preferential interactions between small solutes and the protein backbone: a computational analysis | Q36803436 |
| | Multiple pathways promote dynamical coupling between catalytic domains in Escherichia coli prolyl-tRNA synthetase | Q37112012 |
| | Investigation of cosolute-protein preferential interaction coefficients: new insight into the mechanism by which arginine inhibits aggregation | Q37190044 |
| | Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability | Q37263453 |
| | Effect of macromolecular crowding on protein binding stability: modest stabilization and significant biological consequences | Q37281880 |
| | Aminoacyl-tRNA synthetases as drug targets in eukaryotic parasites | Q37613101 |
| | Aminoacyl-tRNA synthetase inhibitors as potent antibacterials | Q38017236 |
| | Role of aminoacyl-tRNA synthetases in infectious diseases and targets for therapeutic development | Q38105920 |
| | Osmolyte effects on protein stability and solubility: a balancing act between backbone and side-chains. | Q38306573 |
| | The stabilization of proteins by sucrose | Q38356178 |
| | Size-dependent studies of macromolecular crowding on the thermodynamic stability, structure and functional activity of proteins: in vitro and in silico approaches. | Q39007982 |
| | CH/π Interactions in Carbohydrate Recognition. | Q39394131 |
| | The control of protein stability and association by weak interactions with water: how do solvents affect these processes? | Q40833005 |
| | Macromolecular crowding directs the motion of small molecules inside cells | Q40984695 |
| | Crowding in Cellular Environments at an Atomistic Level from Computer Simulations | Q41600734 |
| | A colorimetric method for the molecular weight determination of polyethylene glycol using gold nanoparticles | Q41845870 |
| | CHARMM Additive All-Atom Force Field for Phosphate and Sulfate Linked to Carbohydrates | Q42105857 |
| | Mechanistic investigation of domain specific unfolding of human serum albumin and the effect of sucrose | Q42142826 |
| | Divergent adaptation of tRNA recognition by Methanococcus jannaschii prolyl-tRNA synthetase | Q42649042 |
| | Non-linear effects of macromolecular crowding on enzymatic activity of multi-copper oxidase | Q43236942 |
| | Impact of preferential interactions on thermal stability and gelation of bovine serum albumin in aqueous sucrose solutions | Q43614569 |
| | Modeling zinc in biomolecules with the self consistent charge-density functional tight binding (SCC-DFTB) method: applications to structural and energetic analysis | Q44359322 |
| | Preferential interaction coefficients of proteins in aqueous arginine solutions and their molecular origins | Q44994322 |
| | Diversity in the mechanisms of cosolute action on biomolecular processes. | Q45830235 |
| | Grcarma: A fully automated task-oriented interface for the analysis of molecular dynamics trajectories. | Q45909863 |
| | Effects of macromolecular crowding on burst phase kinetics of cytochrome c folding | Q46225680 |
| | Incorporation of Hard and Soft Protein-Protein Interactions into Models for Crowding Effects in Binary and Ternary Protein Mixtures. Comparison of Approximate Analytical Solutions with Numerical Simulation | Q46471555 |
| | The crystal structure of leucyl-tRNA synthetase complexed with tRNALeu in the post-transfer-editing conformation | Q46697361 |
| | Effects of macromolecular crowding on the structural stability of human α-lactalbumin | Q47450172 |
| | Effects of macromolecular crowding on refolding of recombinant human brain-type creatine kinase | Q48539732 |
| | PACKMOL: a package for building initial configurations for molecular dynamics simulations. | Q52592073 |
| | Essential dynamics of the cellular retinol-binding protein--evidence for ligand-induced conformational changes. | Q52870084 |
| | Molecular Crowding Affects the Conformational Fluctuations, Peroxidase Activity, and Folding Landscape of Yeast Cytochrome c. | Q52876616 |
| | Active site titration and aminoacyl adenylate binding stoichiometry of aminoacyl-tRNA synthetases | Q52884162 |
| P433 | issue | 7 | |
| P921 | main subject | Escherichia coli | Q25419 |
| P304 | page(s) | 1269-1284 | |
| P577 | publication date | 2019-08-31 | |
| P1433 | published in | Biophysical Journal | Q2032955 |
| P1476 | title | Crowder-Induced Conformational Ensemble Shift in Escherichia coli Prolyl-tRNA Synthetase | |
| P478 | volume | 117 | |