Genome Wide Analysis of WD40 Proteins in Saccharomyces cerevisiae and Their Orthologs in Candida albicans

scientific article published on 01 February 2019

Genome Wide Analysis of WD40 Proteins in Saccharomyces cerevisiae and Their Orthologs in Candida albicans is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/S10930-018-9804-8
P698PubMed publication ID30511317

P2093author name stringBuddhi Prakash Jain
P2860cites workBlast2GO: A comprehensive suite for functional analysis in plant genomicsQ21342816
Rhizomelic chondrodysplasia punctata is caused by deficiency of human PEX7, a homologue of the yeast PTS2 receptorQ24311572
Two TOR complexes, only one of which is rapamycin sensitive, have distinct roles in cell growth controlQ24314363
The Cdc14B-Cdh1-Plk1 axis controls the G2 DNA-damage-response checkpointQ24317772
The small-subunit processome is a ribosome assembly intermediateQ24321301
InterProScan 5: genome-scale protein function classificationQ24465930
Ytm1, Nop7, and Erb1 form a complex necessary for maturation of yeast 66S preribosomesQ24534990
The essential WD40 protein Cia1 is involved in a late step of cytosolic and nuclear iron-sulfur protein assemblyQ24535003
The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4Q24536072
Cdc4, a protein required for the onset of S phase, serves an essential function during G(2)/M transition in Saccharomyces cerevisiaeQ24554462
ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAsQ24555249
A missense mutation (R565W) in cirhin (FLJ14728) in North American Indian childhood cirrhosisQ24615964
Aip1p interacts with cofilin to disassemble actin filamentsQ24682113
The functional landscape of mouse gene expressionQ24794985
The WD-repeat protein superfamily in Arabidopsis: conservation and divergence in structure and functionQ24804811
The essential WD-repeat protein Rsa4p is required for rRNA processing and intra-nuclear transport of 60S ribosomal subunits.Q24811852
The tetramerization domain of the Mnt repressor consists of two right-handed coiled coilsQ27619209
Crystal structure, biochemical and genetic characterization of yeast and E. cuniculi TAF(II)5 N-terminal domain: implications for TFIID assemblyQ27644296
WD40 Repeat Propellers Define a Ubiquitin-Binding Domain that Regulates Turnover of F Box ProteinsQ27665843
The Elp2 subunit is essential for elongator complex assembly and functional regulationQ27700817
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resourcesQ27860739
PWP2, a member of the WD-repeat family of proteins, is an essential Saccharomyces cerevisiae gene involved in cell separationQ27929904
Doa1 is a Cdc48 adapter that possesses a novel ubiquitin binding domainQ27930054
LST8 negatively regulates amino acid biosynthesis as a component of the TOR pathwayQ27930185
Interactions among Ytm1, Erb1, and Nop7 required for assembly of the Nop7-subcomplex in yeast preribosomes.Q27930239
Ama1p is a meiosis-specific regulator of the anaphase promoting complex/cyclosome in yeastQ27930319
COMPASS: a complex of proteins associated with a trithorax-related SET domain proteinQ27931344
Two complexes of spindle checkpoint proteins containing Cdc20 and Mad2 assemble during mitosis independently of the kinetochore in Saccharomyces cerevisiaeQ27931369
Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometryQ27931371
Generation of active protein phosphatase 2A is coupled to holoenzyme assemblyQ27931554
Saccharomyces cerevisiae Cmr1 protein preferentially binds to UV-damaged DNA in vitro.Q27931902
Two novel WD40 domain-containing proteins, Ere1 and Ere2, function in the retromer-mediated endosomal recycling pathway.Q27931950
Mdv1p is a WD repeat protein that interacts with the dynamin-related GTPase, Dnm1p, to trigger mitochondrial divisionQ27932426
Molecular organization of target of rapamycin complex 2.Q27932791
Catabolite degradation of fructose-1,6-bisphosphatase in the yeast Saccharomyces cerevisiae: a genome-wide screen identifies eight novel GID genes and indicates the existence of two degradation pathwaysQ27933074
Control of cyclin ubiquitination by CDK-regulated binding of Hct1 to the anaphase promoting complexQ27933305
The Sec13p complex and reconstitution of vesicle budding from the ER with purified cytosolic proteinsQ27933342
F-box proteins are receptors that recruit phosphorylated substrates to the SCF ubiquitin-ligase complexQ27934075
The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complexQ27934144
Hir1p and Hir2p function as transcriptional corepressors to regulate histone gene transcription in the Saccharomyces cerevisiae cell cycleQ27934417
Sif2p interacts with Sir4p amino-terminal domain and antagonizes telomeric silencing in yeast.Q27934734
DOA1/UFD3 plays a role in sorting ubiquitinated membrane proteins into multivesicular bodiesQ27934992
Yeast Rrp9p is an evolutionarily conserved U3 snoRNP protein essential for early pre-rRNA processing cleavages and requires box C for its association.Q27936080
The role of the lissencephaly protein Pac1 during nuclear migration in budding yeast.Q27936193
Budding yeast Cdc20: a target of the spindle checkpoint.Q27936296
A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiaeQ27936390
Characterization of TUP1, a mediator of glucose repression in Saccharomyces cerevisiaeQ36774798
Heterotrimeric G-protein subunit function in Candida albicans: both the alpha and beta subunits of the pheromone response G protein are required for matingQ36899171
Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.).Q37510638
Genome-wide Analysis of WD40 Protein Family in Human.Q37519403
Role of retrograde trafficking in stress response, host cell interactions, and virulence of Candida albicansQ37545160
The emerging role of APC/CCdh1 in controlling differentiation, genomic stability and tumor suppressionQ37614211
PP2ACdc55 Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine PhosphorylationQ37629763
The Multifunctions of WD40 Proteins in Genome Integrity and Cell Cycle ProgressionQ38344853
Haploinsufficiency-based large-scale forward genetic analysis of filamentous growth in the diploid human fungal pathogen C.albicansQ39758862
A RACK1-like protein regulates hyphal morphogenesis, root entry and in vivo virulence in Verticillium dahliaeQ40371225
Global analysis of altered gene expression during morphogenesis of Candida albicans in vitroQ40394009
A membrane-associated complex containing the Vps15 protein kinase and the Vps34 PI 3-kinase is essential for protein sorting to the yeast lysosome-like vacuoleQ40872969
An in vivo study of Cdh1/APC in breast cancer formation.Q41299284
The Candida albicans HIR histone chaperone regulates the yeast-to-hyphae transition by controlling the sensitivity to morphogenesis signalsQ41436420
Coiled-coils: The long and short of it.Q41594512
A genomewide suppressor and enhancer analysis of cdc13-1 reveals varied cellular processes influencing telomere capping in Saccharomyces cerevisiae.Q41892175
A novel protein kinase homolog essential for protein sorting to the yeast lysosome-like vacuoleQ44541331
Control of filament formation in Candida albicans by the transcriptional repressor TUP1.Q46154938
A seven-WD40 protein related to human RACK1 regulates mating and virulence in Ustilago maydisQ46749955
Gene expression profiling in glioblastoma and immunohistochemical evaluation of IGFBP-2 and CDC20.Q48863501
The armadillo family of structural proteins.Q52566182
Multiple functions of DOA1 in Candida albicans.Q52577896
Peroxisome biogenesis disorders.Q55209610
The histone acetyltransferase Hat1 facilitates DNA damage repair and morphogenesis inCandida albicansQ63470214
Asc1, a WD-repeat protein, is required for hyphal development and virulence in Candida albicansQ85171465
Regulation of the yeast pheromone response pathway by G protein subunitsQ27936512
A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulationQ27936635
CAC3(MSI1) suppression of RAS2(G19V) is independent of chromatin assembly factor I and mediated by NPR1Q27936696
Rpn13p and Rpn14p are involved in the recognition of ubiquitinated Gcn4p by the 26S proteasomeQ27936724
The RACK1 ortholog Asc1 functions as a G-protein beta subunit coupled to glucose responsiveness in yeastQ27936819
A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesisQ27937306
Co-translational capturing of nascent ribosomal proteins by their dedicated chaperonesQ27937424
The p21-activated protein kinase inhibitor Skb15 and its budding yeast homologue are 60S ribosome assembly factors.Q27937471
A U3 snoRNP protein with homology to splicing factor PRP4 and G beta domains is required for ribosomal RNA processingQ27937558
The WD40 protein Caf4p is a component of the mitochondrial fission machinery and recruits Dnm1p to mitochondriaQ27937583
NudEL targets dynein to microtubule ends through LIS1.Q27937675
Yeast Hct1 recognizes the mitotic cyclin Clb2 and other substrates of the ubiquitin ligase APC.Q27937690
Amino acid deprivation inhibits TORC1 through a GTPase-activating protein complex for the Rag family GTPase Gtr1.Q27937703
The WD40 propeller domain of Cdh1 functions as a destruction box receptor for APC/C substratesQ27937846
The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolismQ27938564
Dnm1p-dependent peroxisome fission requires Caf4p, Mdv1p and Fis1pQ27938612
Yeast Asc1p and mammalian RACK1 are functionally orthologous core 40S ribosomal proteins that repress gene expressionQ27938643
COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expressionQ27938795
Complex formation between Mad1p, Bub1p and Bub3p is crucial for spindle checkpoint functionQ27938873
SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machineryQ27939335
The F-box protein Met30 is required for multiple steps in the budding yeast cell cycleQ27939463
LAS24/KOG1, a component of the TOR complex 1 (TORC1), is needed for resistance to local anesthetic tetracaine and normal distribution of actin cytoskeleton in yeastQ27939607
Involvement of specific COPI subunits in protein sorting from the late endosome to the vacuole in yeastQ27940121
Cdc53 is a scaffold protein for multiple Cdc34/Skp1/F-box proteincomplexes that regulate cell division and methionine biosynthesis in yeastQ27940196
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene listsQ28131785
The F-box: a new motif for ubiquitin dependent proteolysis in cell cycle regulation and signal transductionQ28139281
The WD repeat: a common architecture for diverse functionsQ28143827
WD-repeat proteins: structure characteristics, biological function, and their involvement in human diseasesQ28216786
Peroxisome biogenesis disordersQ28269803
Novel predicted peptidases with a potential role in the ubiquitin signaling pathwayQ28287730
Genome-wide fitness test and mechanism-of-action studies of inhibitory compounds in Candida albicansQ28469241
UniProt Knowledgebase: a hub of integrated protein dataQ29615864
Targets of the cyclin-dependent kinase Cdk1Q29616479
WD40 proteins propel cellular networks.Q30156873
A method for WD40 repeat detection and secondary structure predictionQ30432071
Identification and functional characterization of Candida albicans CDC4.Q33225250
Role for the SCFCDC4 ubiquitin ligase in Candida albicans morphogenesisQ33841398
Genomic survey, expression profile and co-expression network analysis of OsWD40 family in riceQ34202053
Identifying the hotspots on the top faces of WD40-repeat proteins from their primary sequences by β-bulges and DHSW tetradsQ34391209
The structure of Sif2p, a WD repeat protein functioning in the SET3 corepressor complexQ34437949
Activity of the APC(Cdh1) form of the anaphase-promoting complex persists until S phase and prevents the premature expression of Cdc20pQ34516234
North American Indian childhood cirrhosis (NAIC)Q34714601
Orthologues of the anaphase-promoting complex/cyclosome coactivators Cdc20p and Cdh1p are important for mitotic progression and morphogenesis in Candida albicansQ35080863
WDSPdb: a database for WD40-repeat proteinsQ35253276
Rhizomelic Chondrodysplasia Punctata Type 1 Caused by a Novel Mutation in the PEX7 Gene.Q35631525
IBS: an illustrator for the presentation and visualization of biological sequencesQ35662095
A WD40 repeat protein regulates fungal cell differentiation and can be replaced functionally by the mammalian homologue striatinQ35806827
Cdc48p interacts with Ufd3p, a WD repeat protein required for ubiquitin-mediated proteolysis in Saccharomyces cerevisiae.Q35908681
MSI1-like proteins: an escort service for chromatin assembly and remodeling complexesQ36161639
Nucleosome assembly factors CAF-1 and HIR modulate epigenetic switching frequencies in an H3K56 acetylation-associated manner in Candida albicansQ36757942
P433issue1
P921main subjectCandida albicansQ310443
Saccharomyces cerevisiaeQ719725
P304page(s)58-75
P577publication date2019-02-01
P1433published inThe Protein JournalQ15760422
P1476titleGenome Wide Analysis of WD40 Proteins in Saccharomyces cerevisiae and Their Orthologs in Candida albicans
P478volume38

Reverse relations

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