Changing Perspectives on the Role of DnaA-ATP in Orisome Function and Timing Regulation

scientific article published on 29 August 2019

Changing Perspectives on the Role of DnaA-ATP in Orisome Function and Timing Regulation is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.3389/FMICB.2019.02009
P932PMC publication ID6727663
P698PubMed publication ID31555240

P50authorJulia E GrimwadeQ56928689
P2093author name stringAlan C Leonard
Prassanna Rao
Rohit P Kadam
P2860cites workFunctions of histone-like proteins in the initiation of DNA replication at oriC of Escherichia coli.Q54645981
The initiator titration model: computer simulation of chromosome and minichromosome control.Q54701030
Low Affinity DnaA-ATP Recognition Sites in Make Non-equivalent and Growth Rate-Dependent Contributions to the Regulated Timing of Chromosome ReplicationQ57753576
DoriC 10.0: an updated database of replication origins in prokaryotic genomes including chromosomes and plasmidsQ58547618
Architecture of the Streptomyces lividans DnaA protein-replication origin complexesQ73692901
The atypical response regulator HP1021 controls formation of the Helicobacter pylori replication initiation complexQ85995950
Origin recognition is the predominant role for DnaA-ATP in initiation of chromosome replicationQ88813913
Identification of a basal system for unwinding a bacterial chromosome originQ91569487
The orisome: structure and functionQ26822618
The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiationQ27639653
Structural basis of replication origin recognition by the DnaA proteinQ27640922
Replication origin recognition and deformation by a heterodimeric archaeal Orc1 complexQ27647690
Structural basis of DNA replication origin recognition by an ORC proteinQ27647693
Autoregulation of the dnaA gene of Escherichia coli K12.Q54461902
The box VII motif of Escherichia coli DnaA protein is required for DnaA oligomerization at the E. coli replication originQ45061770
Fate of the DnaA initiator protein in replication at the origin of the Escherichia coli chromosome in vitroQ45244909
Determination of the minimum domain II size of Escherichia coli DnaA protein essential for cell viability.Q45326966
Spo0A regulates chromosome copy number during sporulation by directly binding to the origin of replication in Bacillus subtilis.Q46017326
Regulatory dynamics in the ternary DnaA complex for initiation of chromosomal replication in Escherichia coli.Q46282732
The Caulobacter crescentus chromosome replication origin evolved two classes of weak DnaA binding sitesQ46303108
Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family.Q46497050
Assembly of Helicobacter pylori initiation complex is determined by sequence-specific and topology-sensitive DnaA-oriC interactionsQ46499898
The DnaA Cycle in Escherichia coli: Activation, Function and Inactivation of the Initiator Protein.Q47194255
Identification of the chromosomal replication origin from Thermus thermophilus and its interaction with the replication initiator DnaA.Q47856484
YabA and DnaD inhibit helix assembly of the DNA replication initiation protein DnaA.Q47874438
Autoregulation of the DNA replication gene dnaA in E. coli K-12.Q48384021
Functional domains of DnaA proteins.Q52975761
Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.Q53341848
A role for the weak DnaA binding sites in bacterial replication origins.Q54351949
A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication originQ27649681
DNA stretching by bacterial initiators promotes replication origin openingQ27674672
The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication originQ28254988
Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNAQ28360242
The intrinsic ATPase activity of Mycobacterium tuberculosis DnaA promotes rapid oligomerization of DnaA on oriCQ28487494
Unique and Universal Features of Epsilonproteobacterial Origins of Chromosome Replication and DnaA-DnaA Box InteractionsQ28828369
Evolutionary history and higher order classification of AAA+ ATPasesQ29615260
DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiationQ30583666
The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coliQ32134791
Rapid exchange of bound ADP on the Staphylococcus aureus replication initiation protein DnaA.Q33553501
DNA adenine methylation is required to replicate both Vibrio cholerae chromosomes once per cell cycleQ33576771
The Role of the N-Terminal Domains of Bacterial Initiator DnaA in the Assembly and Regulation of the Bacterial Replication Initiation ComplexQ33737449
Inactivation of Escherichia coli DnaA protein by DNA polymerase III and negative regulations for initiation of chromosomal replicationQ33779045
Mycobacterium tuberculosis origin of replication and the promoter for immunodominant secreted antigen 85B are the targets of MtrA, the essential response regulatorQ33855102
Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiatorQ34107456
Limiting DNA replication to once and only onceQ34192182
Chromosome replication and the division cycle of Escherichia coli B/r.Q34220500
Differentiation of the DnaA-oriC subcomplex for DNA unwinding in a replication initiation complex.Q34297167
Crosstalk between DnaA protein, the initiator of Escherichia coli chromosomal replication, and acidic phospholipids present in bacterial membranesQ34339951
DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication.Q34342910
oriC-encoded instructions for the initiation of bacterial chromosome replication.Q34459103
DksA is required for growth phase-dependent regulation, growth rate-dependent control, and stringent control of fis expression in Escherichia coliQ34976754
The Fis protein has a stimulating role in initiation of replication in Escherichia coli in vivoQ35073122
Two oppositely oriented arrays of low-affinity recognition sites in oriC guide progressive binding of DnaA during Escherichia coli pre-RC assembly.Q35333019
The chromosomal origin of replication(oriC)ofErwinia carotovoraQ35504347
Negative control of bacterial DNA replication by a cell cycle regulatory protein that binds at the chromosome originQ35669148
Cdc6-induced conformational changes in ORC bound to origin DNA revealed by cryo-electron microscopyQ35823597
Klebsiella pneumoniae origin of replication (oriC) is not active in Caulobacter crescentus, Pseudomonas putida, and Rhodobacter sphaeroidesQ36212327
Nucleotide-Induced Conformational Changes in Escherichia coli DnaA Protein Are Required for Bacterial ORC to Pre-RC Conversion at the Chromosomal OriginQ36324820
Mutational analysis reveals Escherichia coli oriC interacts with both DnaA-ATP and DnaA-ADP during pre-RC assemblyQ36668007
Regulation of the initiation of chromosomal replication in bacteriaQ36801693
Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP.Q36852282
Once in a lifetime: strategies for preventing re-replication in prokaryotic and eukaryotic cells.Q37075862
DNA replication origins.Q37197487
The origin recognition complex protein familyQ37213779
Coordinating DNA replication initiation with cell growth: differential roles for DnaA and SeqA proteinsQ37230178
Bacterial origin recognition complexes direct assembly of higher-order DnaA oligomeric structuresQ37413476
Chromosomal replication origin from the marine bacterium Vibrio harveyi functions in Escherichia coli: oriC consensus sequenceQ37604626
Cell cycle-specific changes in nucleoprotein complexes at a chromosomal replication origin.Q37625514
Building the bacterial orisome: high-affinity DnaA recognition plays a role in setting the conformation of oriC DNAQ37712455
A structural framework for replication origin opening by AAA+ initiation factors.Q38069696
Regulating DNA replication in bacteriaQ38087526
A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidnece from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivoQ38292172
Interaction of the initiator protein DnaA of Escherichia coli with its DNA targetQ38293364
Phylogenetic analysis of enteric species of the family Enterobacteriaceae using the oriC-locusQ38310680
The dnaA initiator protein binds separate domains in the replication origin of Escherichia coliQ38344858
Control of the replication initiator DnaA by an anti-cooperativity factorQ38689989
Autoregulation of the dnaA-dnaN operon and effects of DnaA protein levels on replication initiation in Bacillus subtilisQ39503880
Conserved response regulator CtrA and IHF binding sites in the alpha-proteobacteria Caulobacter crescentus and Rickettsia prowazekii chromosomal replication originsQ39694855
FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditionsQ39934971
The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coliQ40505779
The Arg Fingers of Key DnaA Protomers Are Oriented Inward within the Replication Origin oriC and Stimulate DnaA Subcomplexes in the Initiation ComplexQ40781109
Regulation of initiation of the chromosomal replication by DnaA-boxes in the origin region of the Bacillus subtilis chromosome.Q41106934
Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiationQ41577510
The bacterial DnaA-trio replication origin element specifies single-stranded DNA initiator bindingQ41791837
Structural basis for ATP-dependent DnaA assembly and replication-origin remodelingQ41791841
SeqA blocking of DnaA-oriC interactions ensures staged assembly of the E. coli pre-RC.Q41836652
Timing of initiation of chromosome replication in individual Escherichia coli cellsQ41853340
Topological characterization of the DnaA-oriC complex using single-molecule nanomanipuation.Q41960283
Architecture of bacterial replication initiation complexes: orisomes from four unrelated bacteriaQ41981022
Soj/ParA stalls DNA replication by inhibiting helix formation of the initiator protein DnaA.Q42027915
Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coliQ42085318
The sporulation protein SirA inhibits the binding of DnaA to the origin of replication by contacting a patch of clustered amino acidsQ42091460
AdpA, key regulator for morphological differentiation regulates bacterial chromosome replicationQ42260382
The primosomal protein DnaD inhibits cooperative DNA binding by the replication initiator DnaA in Bacillus subtilisQ42321823
The right half of the Escherichia coli replication origin is not essential for viability, but facilitates multi-forked replicationQ42391802
Helicobacter pylori oriC--the first bipartite origin of chromosome replication in Gram-negative bacteriaQ42408624
The Caulobacter crescentus Homolog of DnaA (HdaA) Also Regulates the Proteolysis of the Replication Initiator Protein DnaAQ42599741
IHF redistributes bound initiator protein, DnaA, on supercoiled oriC of Escherichia coliQ42619952
Complexes at the replication origin of Bacillus subtilis with homologous and heterologous DnaA proteinQ42669406
Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosomeQ44347022
DnaA Protein of Escherichia coli: oligomerization at the E. coli chromosomal origin is required for initiation and involves specific N-terminal amino acidsQ44514207
ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosomeQ44623972
Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA.Q44775863
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P304page(s)2009
P577publication date2019-08-29
P1433published inFrontiers in MicrobiologyQ27723481
P1476titleChanging Perspectives on the Role of DnaA-ATP in Orisome Function and Timing Regulation
P478volume10