| scholarly article | Q13442814 |
| P2093 | author name string | Gregory W Stull | |
| Joseph F Walker | |||
| Drew A Larson | |||
| Nathanael Walker-Hale | |||
| Oscar M Vargas | |||
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| The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis | Q29614978 | ||
| Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III | Q29616844 | ||
| Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome-scale data set. | Q31011963 | ||
| Conflict amongst chloroplast DNA sequences obscures the phylogeny of a group of Asplenium ferns | Q33332403 | ||
| Sequence-repeat polymorphisms exhibit the signature of recombination in lodgepole pine chloroplast DNA | Q74631657 | ||
| Phylogeny of flowering plants by the chloroplast genome sequences: in search of a "lucky gene" | Q80515742 | ||
| Primer development for the plastid region ycf1 in Annonaceae and other magnoliids | Q84216948 | ||
| Why would phylogeneticists ignore computerized sequence alignment? | Q84357624 | ||
| Heteroplasmy of chloroplast DNA in Medicago | Q86839165 | ||
| Mitochondrion-to-plastid DNA transfer: it happens | Q87171603 | ||
| Variation Across Mitochondrial Gene Trees Provides Evidence for Systematic Error: How Much Gene Tree Variation Is Biological? | Q87852245 | ||
| Analyzing Contentious Relationships and Outlier Genes in Phylogenomics | Q89076273 | ||
| ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R | Q90281822 | ||
| The structure and function of RuBisCO and their implications for systematic studies | Q47755120 | ||
| Phylogeny of Lamiidae. | Q51114228 | ||
| Sources of inversion variation in the small single copy (SSC) region of chloroplast genomes. | Q51325431 | ||
| Targeted enrichment strategies for next-generation plant biology. | Q53388579 | ||
| Biparental inheritance of chloroplast DNA and the existence of heteroplasmic cells in alfalfa. | Q54262070 | ||
| Contentious relationships in phylogenomic studies can be driven by a handful of genes. | Q54936049 | ||
| So many genes, so little time: A practical approach to divergence-time estimation in the genomic era. | Q54998842 | ||
| Differences in Performance among Test Statistics for Assessing Phylogenomic Model Adequacy. | Q55251055 | ||
| ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees. | Q55378326 | ||
| Plastid phylogenomic analysis of green plants: A billion years of evolutionary history | Q55867263 | ||
| Inheritance of chloroplast DNA is not strictly maternal in Silene vulgaris (Caryophyllaceae): evidence from experimental crosses and natural populations | Q57134029 | ||
| Plastome sequences and exploration of tree-space help to resolve the phylogeny of riceflowers (Thymelaeaceae: Pimelea) | Q57143810 | ||
| More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy | Q57162900 | ||
| Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty | Q57193126 | ||
| Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms | Q73194415 | ||
| Revealing the hidden complexities of mtDNA inheritance | Q33397132 | ||
| Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae). | Q33757219 | ||
| A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes | Q33927561 | ||
| ycf1, the most promising plastid DNA barcode of land plants | Q34043142 | ||
| Erasing errors due to alignment ambiguity when estimating positive selection | Q34137998 | ||
| Angiosperm phylogeny: 17 genes, 640 taxa | Q34187312 | ||
| Complete cpDNA genome sequence of Smilax china and phylogenetic placement of Liliales--influences of gene partitions and taxon sampling | Q34285449 | ||
| Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella. | Q34393252 | ||
| Toward resolving the eukaryotic tree: the phylogenetic positions of jakobids and cercozoans. | Q34661590 | ||
| Resolving an ancient, rapid radiation in Saxifragales | Q34750162 | ||
| Gene transfer from organelles to the nucleus: frequent and in big chunks | Q35170156 | ||
| A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity. | Q35547985 | ||
| Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants. | Q35736389 | ||
| Bayes factors unmask highly variable information content, bias, and extreme influence in phylogenomic analyses | Q36230833 | ||
| A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus | Q36801808 | ||
| A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference | Q37231281 | ||
| Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae). | Q37270752 | ||
| Dealing with incongruence in phylogenomic analyses | Q37292860 | ||
| Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: the tortoise and the hare IV. | Q38264734 | ||
| Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales | Q38716488 | ||
| ModelFinder: fast model selection for accurate phylogenetic estimates | Q38798531 | ||
| Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium). | Q38883637 | ||
| Phyx: phylogenetic tools for unix | Q38973161 | ||
| Reconstructing the history of Campanulaceae with a Bayesian approach to molecular dating and dispersal-vicariance analyses. | Q39408118 | ||
| Comparative organization of chloroplast genomes | Q39850554 | ||
| Gene Tree Discordance Causes Apparent Substitution Rate Variation | Q39958900 | ||
| Instability in progressive multiple sequence alignment algorithms | Q40442593 | ||
| Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. | Q40766693 | ||
| The effects of partitioning on phylogenetic inference | Q41466771 | ||
| A long PCR-based approach for DNA enrichment prior to next-generation sequencing for systematic studies | Q42740844 | ||
| Comparative analysis of complete chloroplast genome sequence and inversion variation in Lasthenia burkei (Madieae, Asteraceae). | Q43764065 | ||
| Angiosperm phylogeny based on matK sequence information | Q44966552 | ||
| Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit. | Q45158968 | ||
| On the best evolutionary rate for phylogenetic analysis. | Q45952903 | ||
| Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes | Q46080518 | ||
| Inferring ancient divergences requires genes with strong phylogenetic signals. | Q46133243 | ||
| Organelle DNA phylogeography of Cycas taitungensis, a relict species in Taiwan | Q47318780 | ||
| Examination of the Cytoplasmic DNA in Male Reproductive Cells to Determine the Potential for Cytoplasmic Inheritance in 295 Angiosperm Species | Q47594161 | ||
| Gene transfer to the nucleus and the evolution of chloroplasts | Q47608344 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P921 | main subject | plastome | Q3182853 |
| P304 | page(s) | e7747 | |
| P577 | publication date | 2019-09-24 | |
| P1433 | published in | PeerJ | Q2000010 |
| P1476 | title | Characterizing gene tree conflict in plastome-inferred phylogenies | |
| P478 | volume | 7 |
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| Q91944283 | ECuADOR-Easy Curation of Angiosperm Duplicated Organellar Regions, a tool for cleaning and curating plastomes assembled from next generation sequencing pipelines |
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