| scholarly article | Q13442814 |
| P2093 | author name string | Andrea L Sweigart | |
| Rachel E Kerwin | |||
| P2860 | cites work | Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 |
| The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data | Q27860742 | ||
| edgeR: a Bioconductor package for differential expression analysis of digital gene expression data | Q27860819 | ||
| The Sequence Alignment/Map format and SAMtools | Q27860966 | ||
| Mapping RNA-seq Reads with STAR | Q28081806 | ||
| Plant Development: Regulation by Protein Degradation | Q28321878 | ||
| Trimmomatic: a flexible trimmer for Illumina sequence data | Q29547278 | ||
| HTSeq--a Python framework to work with high-throughput sequencing data | Q29614489 | ||
| Improving Estimates of Compensatory cis-trans Regulatory Divergence | Q57068829 | ||
| Inheritance of Gene Expression Level and Selective Constraints on Trans- and Cis-Regulatory Changes in Yeast | Q59203908 | ||
| Duplication and paralog sorting of RPB2 and RPB1 genes in core eudicots | Q79508194 | ||
| RPB2 gene phylogeny in flowering plants, with particular emphasis on asterids | Q80255643 | ||
| A high-resolution map of non-crossover events reveals impacts of genetic diversity on mammalian meiotic recombination | Q92994611 | ||
| Population structure and local selection yield high genomic variation in Mimulus guttatus | Q39177173 | ||
| Genome-wide patterns of regulatory divergence revealed by introgression lines | Q40026368 | ||
| Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization | Q42557096 | ||
| Lethality in Drosophila melanogaster/Drosophila simulans species hybrids is not associated with substantial transcriptional misregulation | Q43942724 | ||
| Centromere-associated female meiotic drive entails male fitness costs in monkeyflowers | Q45815647 | ||
| A yeast hybrid provides insight into the evolution of gene expression regulation. | Q46029723 | ||
| Mechanisms of Transmission Ratio Distortion at Hybrid Sterility Loci Within and Between Mimulus Species. | Q46303084 | ||
| Evolutionary changes in cis and trans gene regulation | Q47259060 | ||
| Gene expression divergence and hybrid misexpression between lake whitefish species pairs (Coregonus spp. Salmonidae). | Q51941714 | ||
| Genome-wide patterns of expression in Drosophila pure species and hybrid males. | Q52607802 | ||
| Gene regulation divergence is a major contributor to the evolution of Dobzhansky-Muller incompatibilities between species of Drosophila. | Q52668773 | ||
| Regulatory changes underlying expression differences within and between Drosophila species. | Q52688606 | ||
| Genome wide gene expression in artificially synthesized amphidiploids of Arabidopsis. | Q54351144 | ||
| Gene duplicates cause hybrid lethality between sympatric species of Mimulus. | Q55353919 | ||
| STAR: ultrafast universal RNA-seq aligner | Q29615052 | ||
| The evolution of transcriptional regulation in eukaryotes | Q29618447 | ||
| Sterility and gene expression in hybrid males of Xenopus laevis and X. muelleri | Q33294846 | ||
| Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data | Q33508980 | ||
| Tempo and mode of regulatory evolution in Drosophila | Q33564527 | ||
| Limited gene misregulation is exacerbated by allele-specific upregulation in lethal hybrids between Drosophila melanogaster and Drosophila simulans | Q33801900 | ||
| Regulatory divergence in Drosophila revealed by mRNA-seq. | Q33881371 | ||
| Natural selection on cis and trans regulation in yeasts | Q33881377 | ||
| Evolution of transcriptional regulation | Q34026971 | ||
| Developmental system drift and flexibility in evolutionary trajectories | Q34244194 | ||
| Breeding systems and genome evolution | Q34420801 | ||
| A novel meiotic drive locus almost completely distorts segregation in mimulus (monkeyflower) hybrids | Q34569998 | ||
| The RNA polymerase II machinery: structure illuminates function | Q34574312 | ||
| Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila | Q34586940 | ||
| A simple genetic incompatibility causes hybrid male sterility in mimulus | Q34588428 | ||
| Evidence of natural selection acting on a polymorphic hybrid incompatibility locus in Mimulus | Q35050919 | ||
| Genomic networks of hybrid sterility | Q35105739 | ||
| Speciation and introgression between Mimulus nasutus and Mimulus guttatus | Q35195390 | ||
| Two types of cis-trans compensation in the evolution of transcriptional regulation | Q35217187 | ||
| Regulatory divergence between parental alleles determines gene expression patterns in hybrids | Q35569848 | ||
| Structure and mechanism of the RNA polymerase II transcription machinery | Q35758805 | ||
| Gene regulation and speciation in house mice | Q35911490 | ||
| Gene Regulation and Speciation | Q36212639 | ||
| Extensive additivity of gene expression differentiates subspecies of the house mouse | Q36287806 | ||
| Extensive compensatory cis-trans regulation in the evolution of mouse gene expression | Q36446194 | ||
| Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans | Q36493933 | ||
| Natural selection on gene expression | Q36522213 | ||
| Gene expression divergence and the origin of hybrid dysfunctions | Q36624525 | ||
| Genome clashes in hybrids: insights from gene expression | Q36905443 | ||
| Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression | Q36936380 | ||
| RNA-seq analysis of allele-specific expression, hybrid effects, and regulatory divergence in hybrids compared with their parents from natural populations | Q37061818 | ||
| Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing | Q37353224 | ||
| The roles of cis- and trans-regulation in the evolution of regulatory incompatibilities and sexually dimorphic gene expression | Q37420361 | ||
| Evolutionary Dynamics of Regulatory Changes Underlying Gene Expression Divergence among Saccharomyces Species | Q38879640 | ||
| Hybrid sterility and evolution in Hawaiian Drosophila: differential gene and allele-specific expression analysis of backcross males | Q38921348 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P4510 | describes a project that uses | edgeR | Q113334690 |
| P577 | publication date | 2020-03-20 | |
| P1433 | published in | Molecular Biology and Evolution | Q1992656 |
| P1476 | title | Rampant misexpression in a Mimulus (monkeyflower) introgression line caused by hybrid sterility, not regulatory divergence |
| Q104581387 | Effect of Whole-Genome Duplication on the Evolutionary Rescue of Sterile Hybrid Monkeyflowers | cites work | P2860 |
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