Detection of splice isoforms and rare intermediates using multiplexed primer extension sequencing

scientific article published on 20 December 2018

Detection of splice isoforms and rare intermediates using multiplexed primer extension sequencing is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/S41592-018-0258-X
P932PMC publication ID6414223
P698PubMed publication ID30573814

P50authorJeffrey A PleissQ90682033
P2093author name stringZachary W Dwyer
Hansen Xu
Benjamin J Fair
Michael Gildea
P2860cites workTranscriptome-wide Interrogation of the Functional Intronome by Spliceosome Profiling.Q64963449
Identification of ten genes that control ribosome formation in yeastQ71613205
Spliceosome Profiling Visualizes Operations of a Dynamic RNP at Nucleotide ResolutionQ88571202
Comparative functional genomics of the fission yeastsQ22065619
Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)Q24596281
OligoWiz 2.0--integrating sequence feature annotation into the design of microarray probes.Q24812478
Targeted RNA-sequencing with competitive multiplex-PCR amplicon librariesQ27302929
Spliceosome activation by PRP2 ATPase prior to the first transesterification reaction of pre-mRNA splicingQ27931041
A survey of best practices for RNA-seq data analysisQ28071394
deepTools2: a next generation web server for deep-sequencing data analysisQ28597770
BEDTools: a flexible suite of utilities for comparing genomic featuresQ29547332
STAR: ultrafast universal RNA-seq alignerQ29615052
Reverse transcriptase template switching: a SMART approach for full-length cDNA library constructionQ30664787
Searching yeast intron data at Ares lab Web siteQ30699550
Bias detection and correction in RNA-Sequencing dataQ33965458
Counting absolute numbers of molecules using unique molecular identifiersQ34078995
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.Q36598797
Widespread alternative and aberrant splicing revealed by lariat sequencingQ36676702
Divergence of a conserved elongation factor and transcription regulation in budding and fission yeastQ36959177
Targeted RNA sequencing reveals the deep complexity of the human transcriptomeQ37009455
Nonconsensus branch-site sequences in the in vitro splicing of transcripts of mutant rabbit beta-globin genesQ37538808
The reference genome sequence of Saccharomyces cerevisiae: then and now.Q37655684
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivoQ37664924
Structural toggle in the RNaseH domain of Prp8 helps balance splicing fidelity and catalytic efficiencyQ38833557
Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA ProcessingQ39983735
High-fidelity de novo synthesis of pathways using microchip-synthesized oligonucleotides and general molecular biology equipment.Q41094270
An evaluation of detection methods for large lariat RNAsQ43207341
Preparation of yeast RNA.Q46761146
Targeted sequencing for gene discovery and quantification using RNA CaptureSeqQ48320125
The primer extension assay.Q54452165
The evolutionary landscape of alternative splicing in vertebrate speciesQ56894874
P433issue1
P304page(s)55-58
P577publication date2018-12-20
P1433published inNature MethodsQ680640
P1476titleDetection of splice isoforms and rare intermediates using multiplexed primer extension sequencing
P478volume16