Taxonomically Informed Scoring Enhances Confidence in Natural Products Annotation

scientific article published on 25 October 2019

Taxonomically Informed Scoring Enhances Confidence in Natural Products Annotation is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1122087601
P356DOI10.3389/FPLS.2019.01329
P953full work available at URLhttps://www.frontiersin.org/articles/10.3389/fpls.2019.01329/pdf
P10283OpenAlex IDW2982110451
P932PMC publication ID6824209
P698PubMed publication ID31708947
P8299Semantic Scholar corpus ID204881513
P4011Semantic Scholar paper ID00ae71a8eab72bb39d8415a13089d319d41e0bfa

P7228access restriction statusopen accessQ232932
P50authorSamad Nejad EbrahimiQ38805791
???Q97455964
Kornkanok IngkaninanQ90969868
Simon OllivierQ104381950
Miwa Dounoue-KuboQ104381952
Tongchai SaesongQ104381954
Mohsen BagheriQ104381967
Jean-Luc WolfenderQ56084663
Pierre-Marie AllardQ56451301
Jonathan BissonQ57678148
P2860cites workCytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
A cross-platform toolkit for mass spectrometry and proteomicsQ24629036
MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile dataQ27136473
Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometryQ27136845
MetFrag relaunched: incorporating strategies beyond in silico fragmentationQ27702197
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular NetworkingQ27818844
Novel Approach to Classify Plants Based on Metabolite-Content SimilarityQ28818613
Identification of small molecules using accurate mass MS/MS searchQ29994570
Spectral library generating function for assessing spectrum-spectrum match significanceQ34786458
A New Golden Age of Natural Products Drug DiscoveryQ35861508
Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER SoftwareQ36078416
Convergent evolution in plant specialized metabolismQ37833096
Dereplication: racing to speed up the natural products discovery process.Q38409890
Deep metabolome annotation in natural products research: towards a virtuous cycle in metabolite identificationQ38721280
Integration of Molecular Networking and In-Silico MS/MS Fragmentation for Natural Products Dereplication.Q39993461
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Dimeric Aporphine-Benzylisoquinoline and Aporphine-Pavine AlkaloidsQ47357388
Method transfer for fast liquid chromatography in pharmaceutical analysis: application to short columns packed with small particle. Part II: gradient experimentsQ80806821
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Comprehensive mass spectrometry-guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family RhamnaceaeQ91749850
A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organismsQ92688561
Liquid-chromatography retention order prediction for metabolite identificationQ93035535
A taxonomic distinctness index and its statistical propertiesQ104206868
Are We Losing the Science of Taxonomy?Q107026848
Aporphine Alkaloids. IIQ107026873
Synthesis of (±)-Glaucine and (±)-Neospirodienonevia an One-PotBischler—Napieralski Reaction and Oxidative Coupling by a Hypervalent Iodine ReagentQ107026882
A biosynthetically informed distance measure to compare secondary metabolite profiles.Q51147300
Propagating annotations of molecular networks using in silico fragmentation.Q52580602
Correlating chemical diversity with taxonomic distance for discovery of natural products in myxobacteria.Q52687703
Competitive fragmentation modeling of ESI-MS/MS spectra for putative metabolite identificationQ57014238
India needs more plant taxonomistsQ60100398
Diversity measurement combining relative abundances and taxonomic distinctiveness of speciesQ60570554
Accelerating Metabolite Identification in Natural Product Research: Toward an Ideal Combination of Liquid Chromatography–High-Resolution Tandem Mass Spectrometry and NMR Profiling, in Silico Databases, and ChemometricsQ62020441
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure informationQ63352058
CFM-ID 3.0: Significantly Improved ESI-MS/MS Prediction and Compound Identification.Q64912340
Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia LQ67213139
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesGitHubQ364
PythonQ28865
RQ206904
CytoscapeQ3699942
liquid chromatography–mass spectrometryQ873864
tandem mass spectrometryQ874296
NMR spectroscopyQ10359898
fractionationQ15305109
Bayesian optimizationQ17002908
Open Science FrameworkQ18691678
Dictionary of Natural ProductsQ45859849
MZmineQ112189098
GNPSQ112505120
msConvertQ112506514
RmarkdownQ53086556
RDKitQ54152347
TidyverseQ60755534
Global Names ArchitectureQ65691453
Jupyter notebook fileQ70357595
P98editorKazuki SaitoQ40976329
P8324funderNational Institutes of HealthQ390551
Swiss National Science FoundationQ471732
Yamada Science FoundationQ36875376
P921main subjectGlaucium corniculatumQ159368
taxonomyQ8269924
natural productQ901227
chemotaxonomyQ903607
glaucineQ2398298
metabolomicsQ12149006
Glaucium grandiflorumQ12238369
PredicentrineQ104396109
scoring systemQ54117920
P1104number of pages15
P6954online access statusopen accessQ232932
P304page(s)1329
P577publication date2019-10-25
P1433published inFrontiers in Plant ScienceQ27723840
P4032reviewed byTobias KindQ29052381
Hiroshi TsugawaQ57027790
P1476titleTaxonomically Informed Scoring Enhances Confidence in Natural Products Annotation
P478volume10

Reverse relations

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