| scholarly article | Q13442814 |
| P2093 | author name string | Gerhard A Coetzee | |
| Alix Booms | |||
| Steven E Pierce | |||
| P2860 | cites work | Enrichment of risk SNPs in regulatory regions implicate diverse tissues in Parkinson's disease etiology | Q37129119 |
| Functional enhancers at the gene-poor 8q24 cancer-linked locus. | Q37279616 | ||
| The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer | Q37390854 | ||
| Enhancer function: mechanistic and genome-wide insights come together | Q38226378 | ||
| From candidate gene studies to GWAS and post-GWAS analyses in breast cancer | Q38366358 | ||
| MCF-7 cells--changing the course of breast cancer research and care for 45 years | Q38398503 | ||
| Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation | Q38775774 | ||
| CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation | Q38811095 | ||
| The role of enhancers in cancer | Q38882532 | ||
| SNP-mediated disruption of CTCF binding at the IFITM3 promoter is associated with risk of severe influenza in humans | Q40132173 | ||
| Association analysis identifies 65 new breast cancer risk loci. | Q45979098 | ||
| Parkinson's disease genetic risk in a midbrain neuronal cell line. | Q51418803 | ||
| Elucidating the Underlying Functional Mechanisms of Breast Cancer Susceptibility Through Post-GWAS Analyses | Q57108215 | ||
| CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops | Q57294396 | ||
| Model-based analysis of ChIP-Seq (MACS) | Q21183902 | ||
| Widespread plasticity in CTCF occupancy linked to DNA methylation | Q24608987 | ||
| Histone H3K27ac separates active from poised enhancers and predicts developmental state | Q24628758 | ||
| A scaling normalization method for differential expression analysis of RNA-seq data | Q24628783 | ||
| Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
| Gene Expression Omnibus: NCBI gene expression and hybridization array data repository | Q27860523 | ||
| Haploview: analysis and visualization of LD and haplotype maps | Q27860955 | ||
| The genetics of breast cancer risk in the post-genome era: thoughts on study design to move past BRCA and towards clinical relevance | Q28074414 | ||
| Mapping RNA-seq Reads with STAR | Q28081806 | ||
| Histone modifications at human enhancers reflect global cell-type-specific gene expression | Q28238467 | ||
| Interchromosomal interactions and olfactory receptor choice | Q28254529 | ||
| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia | Q28274448 | ||
| deepTools2: a next generation web server for deep-sequencing data analysis | Q28597770 | ||
| BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 | ||
| Mapping and analysis of chromatin state dynamics in nine human cell types | Q29547552 | ||
| A map of the cis-regulatory sequences in the mouse genome | Q29615404 | ||
| STRING v10: protein-protein interaction networks, integrated over the tree of life | Q29615545 | ||
| limma powers differential expression analyses for RNA-sequencing and microarray studies | Q29617988 | ||
| US incidence of breast cancer subtypes defined by joint hormone receptor and HER2 status | Q30665329 | ||
| Germline mutations and polymorphisms in the origins of cancers in women | Q33606675 | ||
| Nucleosome positioning and histone modifications define relationships between regulatory elements and nearby gene expression in breast epithelial cells | Q33669183 | ||
| voom: Precision weights unlock linear model analysis tools for RNA-seq read counts | Q33741687 | ||
| CTCF is conserved from Drosophila to humans and confers enhancer blocking of the Fab-8 insulator | Q34166628 | ||
| Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions | Q34475839 | ||
| Comprehensive functional annotation of seventy-one breast cancer risk Loci | Q34744860 | ||
| Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization | Q35796830 | ||
| The Glucocorticoid Receptor Regulates the ANGPTL4 Gene in a CTCF-Mediated Chromatin Context in Human Hepatic Cells | Q36240329 | ||
| motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites | Q36300830 | ||
| P4510 | describes a project that uses | limma | Q112236343 |
| P433 | issue | 10 | |
| P304 | page(s) | 1735-1745 | |
| P577 | publication date | 2019-07-10 | |
| P1433 | published in | Cancer Epidemiology, Biomarkers & Prevention | Q326334 |
| P1476 | title | MCF-7 as a Model for Functional Analysis of Breast Cancer Risk Variants | |
| P478 | volume | 28 |
| Q98164431 | Unveiling functional heterogeneity in breast cancer multicellular tumor spheroids through single-cell RNA-seq | cites work | P2860 |
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