Transcriptomic and epigenomic differences in human induced pluripotent stem cells generated from six reprogramming methods

scientific article published on 03 October 2017

Transcriptomic and epigenomic differences in human induced pluripotent stem cells generated from six reprogramming methods is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1038/S41551-017-0141-6
P932PMC publication ID6155993
P698PubMed publication ID30263871

P50authorNathan SalomonisQ89864869
Jaecheol LeeQ98227025
Sebastian DieckeQ125904618
P2093author name stringJoseph C Wu
Michael P Snyder
Karim Sallam
Hogune Im
Joseph D Gold
Mingxia Gu
Mohamed Ameen
Meenakshi Venkatasubramanian
Jared M Churko
Gavin Wang
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Sodium butyrate promotes generation of human induced pluripotent stem cells through induction of the miR302/367 clusterQ41809549
Epigenetic repression of cardiac progenitor gene expression by Ezh2 is required for postnatal cardiac homeostasis.Q41811528
Costimulation-adhesion blockade is superior to cyclosporine A and prednisone immunosuppressive therapy for preventing rejection of differentiated human embryonic stem cells following transplantationQ41852461
Lab-specific gene expression signatures in pluripotent stem cellsQ44368751
Model-based analysis of ChIP-Seq (MACS)Q21183902
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profilesQ24536351
Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cellsQ24620932
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and CufflinksQ24633890
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Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA.Q28131663
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Epigenetic memory in induced pluripotent stem cellsQ29547892
In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like stateQ29614212
Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compoundsQ29614344
GREAT improves functional interpretation of cis-regulatory regionsQ29614846
A more efficient method to generate integration-free human iPS cellsQ29615748
Efficient induction of transgene-free human pluripotent stem cells using a vector based on Sendai virus, an RNA virus that does not integrate into the host genomeQ29616636
Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotencyQ29616797
Lentiviral vector design and imaging approaches to visualize the early stages of cellular reprogramming.Q30499307
Patient-specific induced pluripotent stem cells as a model for familial dilated cardiomyopathy.Q30539904
The role of SIRT6 protein in aging and reprogramming of human induced pluripotent stem cellsQ30540850
Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cellsQ31092974
AltAnalyze and DomainGraph: analyzing and visualizing exon expression dataQ33591086
Genetic background drives transcriptional variation in human induced pluripotent stem cellsQ33716774
A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCsQ34045234
Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cellsQ34236195
Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell linesQ34714112
MicroRNA cluster 302-367 enhances somatic cell reprogramming by accelerating a mesenchymal-to-epithelial transitionQ34948267
ToppGene Suite for gene list enrichment analysis and candidate gene prioritizationQ34982758
Implications of Glucose Transporter Protein Type 1 (GLUT1)-Haplodeficiency in Embryonic Stem Cells for Their Survival in Response to Hypoxic StressQ35843464
Genetic Variability Overrides the Impact of Parental Cell Type and Determines iPSC Differentiation PotentialQ35896332
Hypoxia Inhibits Myogenic Differentiation through p53 Protein-dependent Induction of Bhlhe40 ProteinQ36444267
Whole-genome mutational burden analysis of three pluripotency induction methods.Q36605066
miR-429 regulates the transition between Hypoxia-Inducible Factor (HIF)1A and HIF3A expression in human endothelial cellsQ36661786
Transcriptional and epigenetic dynamics during specification of human embryonic stem cellsQ37006585
The regulatory role of c-MYC on HDAC2 and PcG expression in human multipotent stem cellsQ37295496
A transcriptional roadmap to the induction of pluripotency in somatic cellsQ37718657
Transcriptional upregulation of histone deacetylase 2 promotes Myc-induced oncogenic effectsQ38341800
P433issue10
P921main subjectHuman Induced Pluripotent Stem CellsQ88981775
P304page(s)826-837
P577publication date2017-10-03
P1476titleTranscriptomic and epigenomic differences in human induced pluripotent stem cells generated from six reprogramming methods
P478volume1

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cites work (P2860)
Q96692546High-throughput Preparation of DNA, RNA, and Protein from Cryopreserved Human iPSCs for Multi-omics Analysis
Q59360133Human Induced Pluripotent Stem Cell Production and Expansion from Blood using a Non-Integrating Viral Reprogramming Vector
Q94465343Metabolomics Analysis of Mesenchymal Stem Cells
Q91945569Microfluidic reprogramming to pluripotency of human somatic cells
Q89049041Progress, obstacles, and limitations in the use of stem cells in organ-on-a-chip models
Q58086434Systems-Wide Approaches in Induced Pluripotent Stem Cell Models
Q90253499The reprogramming method matters
Q58568612Use of human induced pluripotent stem cell-derived cardiomyocytes to assess drug cardiotoxicity
Q90139918cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes
Q64089132iPS-Cell Technology and the Problem of Genetic Instability—Can It Ever Be Safe for Clinical Use?

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