A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples

scientific article published on 20 July 2019

A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.3390/V11070667
P932PMC publication ID6669555
P698PubMed publication ID31330855

P50authorHans BisgaardQ37615680
Jonathan ThorsenQ55979879
Jakob StokholmQ55979884
Josué L Castro-MejíaQ46329325
Sylvain MoineauQ47452475
Leon E JessenQ47585116
P2093author name stringDennis Sandris Nielsen
Ling Deng
Witold Kot
Shiraz Shah
Ronalds Silins
P2860cites workThe human gut virome: a multifaceted majorityQ26781401
Uncovering Earth’s viromeQ27752340
The human gut microbiota and virome: Potential therapeutic implicationsQ28266057
Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gutQ28394129
Towards quantitative viromics for both double-stranded and single-stranded DNA virusesQ28585976
Bacteroides dorei sp. nov., isolated from human faeces.Q31048188
Kraken: ultrafast metagenomic sequence classification using exact alignmentsQ33742022
Viruses in the faecal microbiota of monozygotic twins and their mothersQ34058882
The human gut virome: inter-individual variation and dynamic response to dietQ34212202
The Subread aligner: fast, accurate and scalable read mapping by seed-and-voteQ34337291
Going viral: next-generation sequencing applied to phage populations in the human gut.Q34366529
Viral metagenomicsQ34417786
Archaea and the human gut: new beginning of an old story.Q34451987
Waiting for the human intestinal EukaryotomeQ34585227
Laboratory procedures to generate viral metagenomesQ34965860
Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromesQ35019000
Early life dynamics of the human gut virome and bacterial microbiome in infants.Q35772212
Gut DNA viromes of Malawian twins discordant for severe acute malnutritionQ36103022
A high-throughput qPCR system for simultaneous quantitative detection of dairy Lactococcus lactis and Leuconostoc bacteriophagesQ36322108
Rapid evolution of the human gut viromeQ37049410
Reproducible protocols for metagenomic analysis of human faecal phageomes.Q52327730
NetoVIR: Modular Approach to Customize Sample Preparation Procedures for Viral MetagenomicsQ59354188
Mouse Vendor Influence on the Bacterial and Viral Gut Composition Exceeds the Effect of Diet.Q64905535
Bacteriophages of the Human Gut: The "Known Unknown" of the MicrobiomeQ91580557
Computational approaches to predict bacteriophage-host relationships.Q38666460
metaSPAdes: a new versatile metagenomic assemblerQ38905159
Interactions between the microbiota, immune and nervous systems in health and disease.Q39090621
Concentration and purification of viruses and bacteriophages with polyethylene glycolQ39182257
HostPhinder: A Phage Host Prediction ToolQ39788901
Computational prospecting the great viral unknown.Q40734728
Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysisQ41131416
WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigsQ42696856
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue7
P921main subjectmetagenomicsQ903778
fecesQ496
viromeQ24977348
fecal sampleQ117817836
P577publication date2019-07-20
P1433published inVirusesQ7935305
P1476titleA Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples
P478volume11

Reverse relations

Q92739733Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphagescites workP2860

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