PubTator central: automated concept annotation for biomedical full text articles

scientific article published on 01 July 2019

PubTator central: automated concept annotation for biomedical full text articles is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/NAR/GKZ389
P932PMC publication ID6602571
P698PubMed publication ID31114887

P50authorRobert LeamanQ19857260
Zhiyong LuQ19857266
Alexis AllotQ59765766
Chih-Hsuan WeiQ96032349
P2860cites workGNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein DomainsQ28200510
Text mining for the biocuration workflowQ28264766
Cross-species gene normalization by species inferenceQ28480443
BEST: Next-Generation Biomedical Entity Search Tool for Knowledge Discovery from Biomedical LiteratureQ28552753
The Cellosaurus, a cell-line knowledge resourceQ54370168
LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC.Q55518772
Scaling up data curation using deep learning: An application to literature triage in genomic variation resourcesQ56888310
LION LBD: a Literature-Based Discovery System for Cancer BiologyQ57287503
Thalia: Semantic search engine for biomedical abstractsQ57452795
PubTerm: a web tool for organizing, annotating and curating genes, diseases, molecules and other concepts from PubMed recordsQ60916067
Configurable web-services for biomedical document annotationQ90712308
PMC text mining subset in BioC: about three million full-text articles and growingQ91329496
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) taskQ28602377
BioCreative V CDR task corpus: a resource for chemical disease relation extractionQ28603068
The CHEMDNER corpus of chemicals and drugs and its annotation principlesQ28649784
NCBI disease corpus: a resource for disease name recognition and concept normalizationQ28657859
PubTator: a web-based text mining tool for assisting biocurationQ28681141
Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track IIQ28711453
SR4GN: a species recognition software tool for gene normalizationQ28728829
Abbreviation definition identification based on automatic precision estimatesQ33371991
Is searching full text more effective than searching abstracts?Q33405450
LINNAEUS: a species name identification system for biomedical literatureQ33530716
iSimp in BioC standard format: enhancing the interoperability of a sentence simplification systemQ33640346
The structural and content aspects of abstracts versus bodies of full text journal articles are differentQ33709943
Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcingQ34221562
A Proteomic Study of Human Merkel Cell CarcinomaQ34274250
tmVar: a text mining approach for extracting sequence variants in biomedical literatureQ34657701
BioC: a minimalist approach to interoperability for biomedical text processingQ34992074
Argo: an integrative, interactive, text mining-based workbench supporting curationQ35840973
SimConcept: a hybrid approach for simplifying composite named entities in biomedical textQ35976857
DiMeX: A Text Mining System for Mutation-Disease Association Extraction.Q35988105
TaggerOne: joint named entity recognition and normalization with semi-Markov ModelsQ36047738
Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision MedicineQ36207982
Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challengesQ36233671
12 years on - Is the NLM medical text indexer still useful and relevant?Q36288886
BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations.Q36794964
Overview of BioCreative II gene normalizationQ36920188
DNorm: disease name normalization with pairwise learning to rankQ37262191
Literature mining of genetic variants for curation: quantifying the importance of supplementary materialQ37575699
A PubMed-wide study of endometriosisQ38441864
GeneView: a comprehensive semantic search engine for PubMedQ38469747
HiPub: translating PubMed and PMC texts to networks for knowledge discoveryQ39531508
SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data.Q41695166
On expert curation and scalability: UniProtKB/Swiss-Prot as a case studyQ47313936
tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicineQ47317210
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstractsQ49980750
Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.Q52562821
A global network of biomedical relationships derived from text.Q52681328
P433issueW1
P407language of work or nameEnglishQ1860
P304page(s)W587-W593
P577publication date2019-07-01
P1433published inNucleic Acids ResearchQ135122
P1476titlePubTator central: automated concept annotation for biomedical full text articles
P478volume47

Reverse relations

cites work (P2860)
Q88978459ACE2 Expression is Increased in the Lungs of Patients with Comorbidities Associated with Severe COVID-19
Q120669123BioHackJP 2023 Report R3: Expand the pathway analysis environment to non-model organisms
Q94460583Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records
Q97530166Hybrid phenotype mining method for investigating off-target protein and underlying side effects of anti-tumor immunotherapy
Q98943981Identification of most influential co-occurring gene suites for gastrointestinal cancer using biomedical literature mining and graph-based influence maximization
Q114872590Integrating knowledge and omics to decipher mechanisms via large‐scale models of signaling networks
Q95322476Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources
Q97542267PEDL: extracting protein-protein associations using deep language models and distant supervision
Q91663919PGxMine: Text mining for curation of PharmGKB
Q101473819Pathway information extracted from 25 years of pathway figures
Q90838734Tracking human genes along the translational continuum

Search more.