| scholarly article | Q13442814 |
| P50 | author | Victoria Sork | Q84265746 |
| Claudia L Henriquez | Q89949007 | ||
| Alayna Mead | Q90943420 | ||
| Zeynep A Celikkol | Q92667640 | ||
| Eric Beraut | Q92667644 | ||
| Rachel S. Meyer | Q92667647 | ||
| Luke Browne | Q56575786 | ||
| P2093 | author name string | Kevin Chang | |
| Courtney Horn | |||
| Feiyang Ma | |||
| P2860 | cites work | phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data | Q24288698 |
| Establishing, maintaining and modifying DNA methylation patterns in plants and animals | Q24630397 | ||
| Epigenetic inheritance in rice plants | Q24644736 | ||
| The Sequence Alignment/Map format and SAMtools | Q27860966 | ||
| First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae) | Q28596118 | ||
| A Comparative Analysis of 5-Azacytidine- and Zebularine-Induced DNA Demethylation | Q28831002 | ||
| Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 | Q29547403 | ||
| Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms | Q29614454 | ||
| HTSeq--a Python framework to work with high-throughput sequencing data | Q29614489 | ||
| STAR: ultrafast universal RNA-seq aligner | Q29615052 | ||
| Epigenetic regulation of adaptive responses of forest tree species to the environment. | Q30596930 | ||
| BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data | Q30691137 | ||
| Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations | Q30946222 | ||
| Modeled regional climate change and California endemic oak ranges | Q31014873 | ||
| Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis | Q33357922 | ||
| Assessing the impact of transgenerational epigenetic variation on complex traits | Q33474817 | ||
| Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change | Q33665319 | ||
| Differential gene expression related to an epigenetic memory affecting climatic adaptation in Norway spruce | Q33850923 | ||
| Gene ontology analysis for RNA-seq: accounting for selection bias | Q33861598 | ||
| Single-base-resolution methylomes of Populus trichocarpa reveal the association between DNA methylation and drought stress | Q33987658 | ||
| Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression | Q34129420 | ||
| Biological effects of 5-azacytidine in eukaryotes | Q34202821 | ||
| New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems | Q34225596 | ||
| Widespread dynamic DNA methylation in response to biotic stress | Q34317160 | ||
| A DNA methylation reader complex that enhances gene transcription | Q90316734 | ||
| ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations | Q90910813 | ||
| Seedling response to water stress in valley oak (Quercus lobata) is shaped by different gene networks across populations | Q90943427 | ||
| A hypomethylated population of Brassica rapa for forward and reverse epi-genetics. | Q34452523 | ||
| Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis | Q34562910 | ||
| Transgenerational epigenetic instability is a source of novel methylation variants | Q35533269 | ||
| DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation. | Q35549029 | ||
| Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements | Q35947977 | ||
| DNA methylation, vernalization, and the initiation of flowering | Q36043088 | ||
| Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation | Q36044823 | ||
| Evidence for an epigenetic role in inbreeding depression | Q36231419 | ||
| Uncovering the contribution of epigenetics to plant phenotypic variation in Mediterranean ecosystems. | Q36411544 | ||
| On the origin and evolutionary consequences of gene body DNA methylation | Q37181896 | ||
| Epigenetic regulation of transposable elements in plants | Q37324789 | ||
| Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development | Q37405920 | ||
| Drugs for plant chromosome and chromatin research | Q38200822 | ||
| Altering gene expression with 5-azacytidine | Q38383611 | ||
| Putting DNA methylation in context: from genomes to gene expression in plants | Q38945347 | ||
| Epigenetic variation creates potential for evolution of plant phenotypic plasticity | Q39628147 | ||
| Species-wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients | Q40034395 | ||
| Epigenetics for ecologists | Q40153209 | ||
| High-Frequency Conversion to a “Fluffy” Developmental Phenotype in Aspergillus spp. by 5-Azacytidine Treatment: Evidence for Involvement of a Single Nuclear Gene | Q40680717 | ||
| Transcript profiling in Arabidopsis reveals complex responses to global inhibition of DNA methylation and histone deacetylation | Q42163857 | ||
| Relative contribution of contemporary pollen and seed dispersal to the effective parental size of seedling population of California valley oak (Quercus lobata, Née). | Q42633652 | ||
| CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data | Q42694468 | ||
| Stress-induced DNA methylation changes and their heritability in asexual dandelions. | Q43225233 | ||
| Epigenetics in ecology and evolution: what we know and what we need to know | Q44489210 | ||
| Ecological plant epigenetics: Evidence from model and non-model species, and the way forward | Q46287242 | ||
| DNA hypomethylation in 5-azacytidine-induced early-flowering lines of flax | Q46466719 | ||
| Transcriptomic profiling of Aspergillus flavus in response to 5-azacytidine | Q46832805 | ||
| Mapping the epigenetic basis of complex traits. | Q46934949 | ||
| ImageJ2: ImageJ for the next generation of scientific image data | Q47143844 | ||
| Targeted DNA demethylation of the Arabidopsis genome using the human TET1 catalytic domain | Q50422620 | ||
| DNA methylation mediates genetic variation for adaptive transgenerational plasticity | Q51268060 | ||
| Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription | Q53013759 | ||
| Understanding natural epigenetic variation. | Q54418369 | ||
| Survival and mutagenic effects of 5-azacytidine in Escherichia coli | Q69025193 | ||
| Inhibition of DNA methyltransferase and induction of Friend erythroleukemia cell differentiation by 5-azacytidine and 5-aza-2'-deoxycytidine | Q72656874 | ||
| Effect of 5-azacytidine on differentiation and DNA methylation in human promyelocytic leukemia cells (HL-60) | Q72683682 | ||
| An optimized mini-preparation method to obtain high-quality genomic DNA from mature leaves of sunflower | Q80697844 | ||
| P4510 | describes a project that uses | ImageJ | Q1659584 |
| DESeq2 | Q113018293 | ||
| edgeR | Q113334690 | ||
| P433 | issue | 3 | |
| P304 | page(s) | 1019-1028 | |
| P577 | publication date | 2020-03-05 | |
| P1433 | published in | G3 | Q5512701 |
| P1476 | title | Experimental DNA Demethylation Associates with Changes in Growth and Gene Expression of Oak Tree Seedlings | |
| P478 | volume | 10 |
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